BAC Information

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BAC

Clone NameB6Ng01-108F01
Chromosome16 (Build37)
Map Location 37,046,996 - 37,149,817
singlet/doubletdoublet
Overlap genePolq, Stxbp5l
Upstream gene2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252
Downstream geneGtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108F01.bB6Ng01-108F01.g
ACCDH915531DH915532
length1,1781,087
definitionDH915531|Mus musculus domesticus DNA, BAC clone: B6Ng01-108F01, 5' end.DH915532|Mus musculus domesticus DNA, BAC clone: B6Ng01-108F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,046,996 - 37,048,022)(37,148,714 - 37,149,817)
sequence
gaattcaacaaggaagccaacaagcatctgcatgaagtaagaagtcaata
caggatatgaatgaggcattcaatagagacagaaatactgaaaaaaatca
aatggaaattttgtaaataaaaatctcattgactcaaataaaagctcaat
ggaaagcctctccaaatagaaagcagagtttcagggcctaaagacaaggt
atatgaattagaacatgaagataatgacaaaggtaataagaaaatatgaa
gggaaatgacaagatccacaggacattgttaaaaggcccaatctaagagc
tactaagatgacacggtatgtgaacaatgcttggcatgtaagcatatagg
ccagctcaatagagtatgctaggcatggcagcagacatctgaaattccag
tgctgaggaggtagtgacagaagaatcaggggctggagagatggctcagt
ggttaataacactgactgctcttccagaggtgctgagttcaattcccagc
aaccacatggtggcttaaaaccatctgtaagggagttggatgccctcatc
tggtgtgtctgaagagagtaacagtgtactcacatatataaaataaataa
atcttaacaaaacaaaacaaaacaacaacaacaaaaaaaagagatttgta
gactcttgacctgaccaatctaaatctcatgcctcaagaaggtttcacaa
acaggtagagtctgggtctgattttactcgttgttagcccttaggaggga
aacactgagatactaaagggtttgtgtctttatgtataagaggcttcttt
gtgaatgtgtgtgcatgtgagggatgctgagtagatgtgggcagagggta
caatgaagggaagcactcagtactcaagtgactggcatcaccgatctaaa
ctgcatctggaggcagtgttcttatggagcagtgacttcctccaaaggag
gtacttggctctcatgatctctttatttccagagggtgggctatgggcag
gtgggcaggaggcagagggcaggaggcagaatagccttttttttttttta
agaaaaaactatcgcttcttgtctttggctaagatcagaaaatagtacta
gatgttgctctttacttcttagcactgatgtttaatcatttgttcagaag
agtctcatctgctggttaagttcattta
gaattctgcagtaaatctatctggccttgagtttctgtttatttggcaga
ttttcaattctgtctctctcagtgggggaaacatgtctgtttagattatt
tcatgttgatttagcttcagtagatcatatcatccatttctttaggtctt
ccagattggtggaatacagacttttaaagggtgcccttatggttctctga
atttcctcatcgtctcccttttcatctctcattttgtcatttggattggc
tttctctttcttttgaataacatggctaaaggcttgtcaatactatgaat
tttttcaaagaacaaatacctacacacacaactatactgcgtacacacta
aagttaataaaaaagaaatgaaaggtagaaagaagtggaattaggttaat
ttcacttttcacaagttttgtaatgttgaaaattaatttttcaactactc
taattatatttccctttctccaagaaggacaagattgttactattggcag
tggggcataattcatttgtgttttttattcaactgtggaaatgtcttgtg
ggtattaatccaattcattatttgctcctcagtttgcattgacatctagg
tactgtctcattgacagtatgacttatgacttcaaaggcagagaatttct
agatagatttctttcattaatctatctatctatctatctatctatctatc
tatctatctatctatctatctattcactcattcattttacatccagatca
caggcccccttcatcctcttctcctattccaacgctcaaaaaccactccc
ctcactccccctcacccttttcctcagcgaagggggagcccacccctcct
gggtacaaacctgacctgccacatcaaataacagcaggaccaaagtgtaa
atgaaatttcagagtcgttttgatttgcatcttcctgatgactaagaatg
atgaacattctccagtgcttcttgccattagagatctctgttgagaattt
ctgtttagctctgtacccatttttatgggttttgatttgtggtatctaaa
ttctgagtctataggattttgatatagtccctctgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_37046996_37048022
seq2: B6Ng01-108F01.b_216_1220

seq1  CAGAGTTTCAGGGCCTAAAGACAAGGTATATGAATTAGAACATGAAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTCAGGGCCTAAAGACAAGGTATATGAATTAGAACATGAAGATA  50

seq1  ATGACAAAGGTAATAAGAAAATATGAAGGGAAATGACAAGATCCACAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAAGGTAATAAGAAAATATGAAGGGAAATGACAAGATCCACAGGA  100

seq1  CATTGTTAAAAGGCCCAATCTAAGAGCTACTAAGATGACACGGTATGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTAAAAGGCCCAATCTAAGAGCTACTAAGATGACACGGTATGTGA  150

seq1  ACAATGCTTGGCATGTAAGCATATAGGCCAGCTCAATAGAGTATGCTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCTTGGCATGTAAGCATATAGGCCAGCTCAATAGAGTATGCTAGG  200

seq1  CATGGCAGCAGACATCTGAAATTCCAGTGCTGAGGAGGTAGTGACAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAGCAGACATCTGAAATTCCAGTGCTGAGGAGGTAGTGACAGAAG  250

seq1  AATCAGGGGCTGGAGAGATGGCTCAGTGGTTAATAACACTGACTGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGGGCTGGAGAGATGGCTCAGTGGTTAATAACACTGACTGCTCTT  300

seq1  CCAGAGGTGCTGAGTTCAATTCCCAGCAACCACATGGTGGCTTAAAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGTGCTGAGTTCAATTCCCAGCAACCACATGGTGGCTTAAAACCA  350

seq1  TCTGTAAGGGAGTTGGATGCCCTCATCTGGTGTGTCTGAAGAGAGTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGGGAGTTGGATGCCCTCATCTGGTGTGTCTGAAGAGAGTAACA  400

seq1  GTGTACTCACATATATAAAATAAATAAATCTTAACAAAACAAAACAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTCACATATATAAAATAAATAAATCTTAACAAAACAAAACAAAAC  450

seq1  AACAACAACAAAAAAAAGAGATTTGTAGACTCTTGACCTGACCAATCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAAAAAAAAGAGATTTGTAGACTCTTGACCTGACCAATCTAA  500

seq1  ATCTCATGCCTCAAGAAGGTTTCACAAACAGGTAGAGTCTGGGTCTGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATGCCTCAAGAAGGTTTCACAAACAGGTAGAGTCTGGGTCTGATT  550

seq1  TTACTCGTTGTTAGCCCTTAGGAGGGAAACACTGAGATACTAAAGGGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCGTTGTTAGCCCTTAGGAGGGAAACACTGAGATACTAAAGGGTTT  600

seq1  GTGTCTTTATGTATAAGAGGCTTCTTTGTGAATGTGTGTGCATGTGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTTATGTATAAGAGGCTTCTTTGTGAATGTGTGTGCATGTGAGGG  650

seq1  ATGCTGAGTAGATGTGGGCAGAGGGTACAATGAAGGGAAGCACTCAGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAGTAGATGTGGGCAGAGGGTACAATGAAGGGAAGCACTCAGTAC  700

seq1  TCAAGTGACTGGCATCACCGATCTAAACTGCATCTGGAGGCAGTGTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGACTGGCATCACCGATCTAAACTGCATCTGGAGGCAGTGTTCTT  750

seq1  ATGGAGCAGTGACTTCCTCCAAAGGAGGTACTTGGCTCTCATGATCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCAGTGACTTCCTCCAAAGGAGGTACTTGGCTCTCATGATCTCTT  800

seq1  TATTTCCAGAGGGTGGGGCTATGGGCAGGTGGGCAGGAGGGCAGGAGGGC  850
      |||||||||||||| ||||||||||||||||||||||| |||| ||||||
seq2  TATTTCCAGAGGGT-GGGCTATGGGCAGGTGGGCAGGA-GGCA-GAGGGC  847

seq1  AGGAGGGCAGGATAGCCTTTTTTTTTTTTTTAAAGAAAATACTATCGCTT  900
      |||| ||||| |||||||||||||||||||  ||||||| ||||||||||
seq2  AGGA-GGCAGAATAGCCTTTTTTTTTTTTT--AAGAAAAAACTATCGCTT  894

seq1  CTTGGTCTTTTGGCTAAGATCAAGAAAATAGTAACTAGAATGTTGCTCTT  950
      ||| ||| ||||||||||||| |||||||||| ||||| |||||||||||
seq2  CTT-GTC-TTTGGCTAAGATC-AGAAAATAGT-ACTAG-ATGTTGCTCTT  939

seq1  TACTTCTTTTAGCACTTGATGTTTTATATCATTTGTCCAGGAAAGAGTCC  1000
      ||||||  ||||||| ||||||||   ||||||||| |||  ||||||| 
seq2  TACTTC--TTAGCAC-TGATGTTT--AATCATTTGTTCAG--AAGAGTC-  981

seq1  TTCATCTGTTTTGTTATAGTTCATTTA  1027
       |||||||  | |||| ||||||||||
seq2  -TCATCTG-CTGGTTA-AGTTCATTTA  1005

seq1: chr16_37148714_37149817
seq2: B6Ng01-108F01.g_66_1152 (reverse)

seq1  GACAGA-GGACTAATATCCAAAATACTTATAGAACTCAAGAAATTAGATA  49
      |||||| ||||| |||| |||||| | ||||| |||| |||| |||||||
seq2  GACAGAGGGACT-ATAT-CAAAAT-CCTATAG-ACTC-AGAATTTAGATA  45

seq1  CCAACAAATCAAATAACCCAATTAAAAAATGGGGTACAGAGCTAAACAGA  99
      || |||||||||  ||||||  ||||||   |||||||||||||||||| 
seq2  CC-ACAAATCAA--AACCCA--TAAAAA--TGGGTACAGAGCTAAACAG-  87

seq1  AAATTCTCAACAGAGGATCTCTAATGGCCAAGAAGCACTTGGAGAAATGT  149
      |||||||||||||| |||||||||||| |||||||||| ||||| |||||
seq2  AAATTCTCAACAGA-GATCTCTAATGG-CAAGAAGCAC-TGGAG-AATGT  133

seq1  TCATCATTCTTAGTCATCAGGAAGATGCAAATCAAAACGACTCTGAAATT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTCTTAGTCATCAGGAAGATGCAAATCAAAACGACTCTGAAATT  183

seq1  TCATTTTACACTTTGGTCCTGCTGTTATTTGATGTGGCAGGTCAGGTTTG  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCA-TTTACACTTTGGTCCTGCTGTTATTTGATGTGGCAGGTCAGGTTTG  232

seq1  TACCCAGGAGGGGTGGGCTCCCCCTTCGCTGAGGAAAAGGGTGAGGGGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGGAGGGGTGGGCTCCCCCTTCGCTGAGGAAAAGGGTGAGGGGGA  282

seq1  GTGAGGGGAGTGGTTTTTGAGCGTTGGAATAGGAGAAGAGGATGAAGGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGGAGTGGTTTTTGAGCGTTGGAATAGGAGAAGAGGATGAAGGGG  332

seq1  GCCTGTGATCTGGATGTAAAATGAATGAGTGAATAGATAGATAGATAGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGATCTGGATGTAAAATGAATGAGTGAATAGATAGATAGATAGAT  382

seq1  AGATAGATAGATAGATAGATAGATAGATAGATAGATTAATGAAAGAAATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGATAGATAGATAGATAGATTAATGAAAGAAATC  432

seq1  TATCTAGAAATTCTCTGCCTTTGAAGTCATAAGTCATACTGTCAATGAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGAAATTCTCTGCCTTTGAAGTCATAAGTCATACTGTCAATGAGA  482

seq1  CAGTACCTAGATGTCAATGCAAACTGAGGAGCAAATAATGAATTGGATTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCTAGATGTCAATGCAAACTGAGGAGCAAATAATGAATTGGATTA  532

seq1  ATACCCACAAGACATTTCCACAGTTGAATAAAAAACACAAATGAATTATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCACAAGACATTTCCACAGTTGAATAAAAAACACAAATGAATTATG  582

seq1  CCCCACTGCCAATAGTAACAATCTTGTCCTTCTTGGAGAAAGGGAAATAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTGCCAATAGTAACAATCTTGTCCTTCTTGGAGAAAGGGAAATAT  632

seq1  AATTAGAGTAGTTGAAAAATTAATTTTCAACATTACAAAACTTGTGAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAGTAGTTGAAAAATTAATTTTCAACATTACAAAACTTGTGAAAA  682

seq1  GTGAAATTAACCTAATTCCACTTCTTTCTACCTTTCATTTCTTTTTTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATTAACCTAATTCCACTTCTTTCTACCTTTCATTTCTTTTTTATT  732

seq1  AACTTTAGTGTGTACGCAGTATAGTTGTGTGTGTAGGTATTTGTTCTTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAGTGTGTACGCAGTATAGTTGTGTGTGTAGGTATTTGTTCTTTG  782

seq1  AAAAAATTCATAGTATTGACAAGCCTTTAGCCATGTTATTCAAAAGAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTCATAGTATTGACAAGCCTTTAGCCATGTTATTCAAAAGAAAG  832

seq1  AGAAAGCCAATCCAAATGACAAAATGAGAGATGAAAAGGGAGACGATGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCCAATCCAAATGACAAAATGAGAGATGAAAAGGGAGACGATGAG  882

seq1  GAAATTCAGAGAACCATAAGGGCACCCTTTAAAAGTCTGTATTCCACCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCAGAGAACCATAAGGGCACCCTTTAAAAGTCTGTATTCCACCAA  932

seq1  TCTGGAAGACCTAAAGAAATGGATGATATGATCTACTGAAGCTAAATCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGACCTAAAGAAATGGATGATATGATCTACTGAAGCTAAATCAA  982

seq1  CATGAAATAATCTAAACAGACATGTTTCCCCCACTGAGAGAGACAGAATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATAATCTAAACAGACATGTTTCCCCCACTGAGAGAGACAGAATT  1032

seq1  GAAAATCTGCCAAATAAACAGAAACTCAAGGCCAGATAGATTTACTGCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTGCCAAATAAACAGAAACTCAAGGCCAGATAGATTTACTGCAG  1082

seq1  AATTC  1104
      |||||
seq2  AATTC  1087