BAC Information

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BAC

Clone NameB6Ng01-108I20
Chromosome16 (Build37)
Map Location 55,538,204 - 55,539,167
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043449, LOC667927, LOC436421, Zpld1
Downstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835, Abi3bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108I20.bB6Ng01-108I20.g
ACCDH915708DH915709
length9151,082
definitionDH915708|Mus musculus domesticus DNA, BAC clone: B6Ng01-108I20, 5' end.DH915709|Mus musculus domesticus DNA, BAC clone: B6Ng01-108I20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagttgaatgagattgtgatgattataagaatggacaggaccaa
gccgggcagggcagtagtggcgcacgcctttaatcccagcacttgggagg
cagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggca
gaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcaga
ggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagagg
cagaggcagaggcagaggcagaggcagaggcagaagcaggcaaatttctg
agttcaaggccagcctggtctacagagtactaggacagccagggctatac
agagaaaccctgtctcataaaaagcaaaaccaaaccaaaccaaaccaaaa
acaaacaaagaatagacaggaccacaaaggaaagtggtcagggtagaagg
aaggcgcagaagttgccagttttgcaagagaatagccaatgtgttggggt
ttcaatactgtactaatgaattactagacagtcttttgtatcttctctca
tgaaccatttctgtttttctatgtgactctttttatgtgtatatgtctct
ctgtctattaattatgtatttagtatcaatgtagttccatgcagaagcca
gtagttattcatgtaacagtcatatgtagtggcctggaagctactatctt
aatgccatgagttcttgcagagatatcaagccatcctcacttattattgg
ctgcgattagcttatatttcatcatgggttcaagcagcttcttcgtgtat
acaattaatacacacgactaatgtgtctttggcatgagtagcatgtaata
atcgtttctgttcatcatatcagctgttgttctcacagacggagactgaa
tcatactgtggtctc
gaattcctgatctctccaacagttttaacatgaaggggtttatgttttgt
caaaggctatttcagcatcgattgggacaatcatgtttttttttttcctt
tgagtttgtttatagagtggattacattgattggttttcatatattgaac
aatccctgcctccctttgatgaagcctacctggttgtggtaaatgatgtt
tttgatggattcttaaagttgagttgtgagaattttgttgagcacttttg
catcaatattcattaataaaattggtctgagtatctctttgttgggtctt
tgtatcagaataactggcctcgtagaaggagttaggtagtattccttctg
ggttttttgttttttaatagtttgaggtaccagctcttagtattggtatt
agttcttcgttgaaggtctggcagaactctgcactaaaaccatctagctg
ggagctttttggttgggaaaaattttaatgactatttctatttctttagg
gataatgggactgtttacatagtttacctgatcttcatataagtatggta
tgtgatacctgtctagaaaatcatccgttttgtctagtttttccagtttt
gtcaaggacaggcttttgtaggaagatctgattttttttttaatttcctg
aatttctgttgttatgtctcccttttcatttctgattttgttaattttta
tactgtctctgtgccctctacttagtttggttaagggtttatctaccttg
ttttctcaagatccagctcctaattttgttgattctttgtatagtctctt
tgtctctacttggttgatttcagcccctagtttgatatttcctgccatct
actcctcttaggtgtatctgcttcttttgttctagagctttcagatgagc
tgtaaactgctagtgatgctctctctaatttctttatgaggcactcagag
taataagatttcctcttagcactgctttcattgtgtccaatagtttggat
attgtggcactttcatttcatattctaagtcttatttcttctaattcttc
cctaggatcactggaaagcattgccacctcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_55538204_55539167
seq2: B6Ng01-108I20.b_48_962 (reverse)

seq1  GAGACCACAGTAAGGAATTCAGTCTCCGTCTGTGGAGAACAAACAGCCTG  50
      |||||||||||| |  ||||||||||||||||| |||||| ||||| |||
seq2  GAGACCACAGTATG--ATTCAGTCTCCGTCTGT-GAGAAC-AACAG-CTG  45

seq1  ATATGGATGAACAGGAAACGATTAATAACTTTTCTACTTCATGCCAAAAG  100
      |||| |||||||| |||||||||| ||    | |||| ||||||| ||||
seq2  ATAT-GATGAACA-GAAACGATTATTA--CATGCTAC-TCATGCC-AAAG  89

seq1  ACACATTAGTCGTGTGTATTAATTGTATACACGAAGAAGCTGCTTTGAAA  150
      |||||||||||||||||||||||||||||||||||||||||||||   ||
seq2  ACACATTAGTCGTGTGTATTAATTGTATACACGAAGAAGCTGCTT--GAA  137

seq1  CCCATGAAATGAAATATAAGCTATTTTGCAAGCCAAAAAAAAAATAAATT  200
      ||||||  |||||||||||||||  | || |||||| ||       || |
seq2  CCCATG--ATGAAATATAAGCTA-ATCGC-AGCCAATAA------TAAGT  177

seq1  GAGGATTTTGCTTGATTATCTCTGCAAGAAACTCATGGCATTAAAAGAAA  250
      |||||  | |||||| |||||||||||| ||||||||||||||| | |  
seq2  GAGGA--TGGCTTGA-TATCTCTGCAAG-AACTCATGGCATTAAGATA--  221

seq1  AAGTTTAGCTTTCCCAGGCCCACTACATATGACTGTTACATGAATAACCC  300
           ||||||  ||||| |||||||||||||||||||||||||||||  
seq2  ----GTAGCTT--CCAGG-CCACTACATATGACTGTTACATGAATAAC--  262

seq1  AAACCTGGCTTTCCTGCATTGGAACTACATTGATACCCAAAAATACAATA  350
          |||||||  ||||| |||||||||||||||||    |||||| |||
seq2  --TACTGGCTT--CTGCA-TGGAACTACATTGATAC---TAAATAC-ATA  303

seq1  ATTTAATAGGACAAAAGAAGAACATATACACATAAAAAAGAGTCACATAG  400
      | |||||||    | |||   |||||||||||| ||||||||||||||||
seq2  A-TTAATAG----ACAGAGAGACATATACACAT-AAAAAGAGTCACATAG  347

seq1  AAAAACAGAAATGGTTTCATGAGAGAAGATACAAAAGACTTTTCTAGTAA  450
      |||||||||||||| |||||||||||||||||||||||| | ||||||||
seq2  AAAAACAGAAATGG-TTCATGAGAGAAGATACAAAAGAC-TGTCTAGTAA  395

seq1  TTCATTAGTACAGTATTGAAACCCCAACACATTGGCTATTCTCTTGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAGTACAGTATTGAAACCCCAACACATTGGCTATTCTCTTGCAAA  445

seq1  ACTGGCAACTTCTGTGCCTTCCTTCTACCCTGACCACTTTCCTTTGTGGT  550
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACTGGCAACTTCTGCGCCTTCCTTCTACCCTGACCACTTTCCTTTGTGGT  495

seq1  CCTGTCTATTCTTTGTTTGTTTTTGGTTTGGTTTGGTTTGGTTTTGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTATTCTTTGTTTGTTTTTGGTTTGGTTTGGTTTGGTTTTGCTTT  545

seq1  TTATGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTAGTACTCTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTAGTACTCTGTA  595

seq1  GACCAGGCTGGCCTTGAACTCAGAAATTTGCCTGCT------TCTGCCTC  694
      ||||||||||||||||||||||||||||||||||||      ||||||||
seq2  GACCAGGCTGGCCTTGAACTCAGAAATTTGCCTGCTTCTGCCTCTGCCTC  645

seq1  TGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTG  695

seq1  CCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCC  745

seq1  TCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTC  795

seq1  TGCCTCTGCCTCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCG  845

seq1  CCACTACTGCCCTGCCCGGCTTGGTCCTGTCCATTCTTATAATCATCACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACTGCCCTGCCCGGCTTGGTCCTGTCCATTCTTATAATCATCACA  895

seq1  ATCTCATTCAACTGGAATTC  964
      ||||||||||||||||||||
seq2  ATCTCATTCAACTGGAATTC  915