BAC Information

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BAC

Clone NameB6Ng01-108N10
Chromosome16 (Build37)
Map Location 25,865,348 - 25,969,244
singlet/doubletdoublet
Overlap geneTrp63, LOC100043571, Leprel1
Upstream geneLpp, 5430420C16Rik
Downstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108N10.bB6Ng01-108N10.g
ACCDH915917DH915918
length3341,188
definitionDH915917|Mus musculus domesticus DNA, BAC clone: B6Ng01-108N10, 5' end.DH915918|Mus musculus domesticus DNA, BAC clone: B6Ng01-108N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,865,348 - 25,865,681)(25,967,999 - 25,969,244)
sequence
acaacagtcctgtacaatttcatgtgtaacagcagctgcgtcggaggaat
gaacagacgtccaattttaatcatcgttactctggaaaccagagagtaag
tggcagtgagcagaaccgaaatcacaaacagccaaaggccaaggaccaag
cagaattctttgtttttgtttttgttttgttttgttttttgttttttgat
ttgtttttgttttttccactgcctttgcctttagaaagagaagacccaga
ttcagtgctttgagctgcaaatcccttgtaaacactgaaagatctgagaa
agtggagacagggaaggggtgtgggggtagagga
gaattcattgcctaagctaaggaaagaaagcccatcccccaaggttcctt
ttatatctgggaaaacgagggttataagcaatgtggctggatttagaagc
tatctgaaatcaagcctgactaactgttgacaatgtcaaatgagcattga
aacaaggccaaaaccatatggaaacggaaccaataagcatccagagtata
agccagacacccctgagcttaatttcaagggttggggggaccaacatcaa
aggtaactccccattcaggtggctcccttcactggtcgtctgtattttac
tatgaggctgctgaggactgtattgtcactgactgccccaccccctcctt
gcagtgctctcctgtatatgaatgacgactttgacggaggggaattcatc
ttcacagaaatggatgctaaaaccgtgactgtaagtaaccctcttcctaa
aattggtttagcattttaaattcagtcttaccatcttcccaggatcttac
cgattgctgaattttaagtagttctgagctcaagaactcaagaggtaaag
cgggttctggtggtctatacataatgaaaatactaaagcataagtcgcca
tttcagtccattttgaagatgagcaaagtgagaaacggggtttttaagaa
cttcatcacagtcatttaaaaaatgttaggtgtggaatcaaagcctagag
gtcctgtcgagtgacctgatgggaacttccagcccgagtccccaaagcat
tcacatcacagacagatcaatggcttccaggagccagagtgcttaggcta
agcacgaactcccaaacgggtacacatgtgcatgcagattggtataaact
gttaaggataagccatgaaccctttactccaaatggatatttatattcag
tagtgtttaaatcaatgtcacagtcaactatttattacagtcaaaaaaat
gccttcaaaacagcatctagcacgcacagacgatatagtagattctttga
tcattacaccaagatcatctcactatagaacactaaatcacaaaaggaga
cttatgatataatatgatacaagttctttcttctgcaatctaagcagctg
gactggcataggtagatttcagacttcctccagttgtgcatcaattagct
accatttctcaggaattcatggaacatgtggttagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_25865348_25865681
seq2: B6Ng01-108N10.b_56_389

seq1  ACAACAGTCCTGTACAATTTCATGTGTAACAGCAGCTGCGTCGGAGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGTCCTGTACAATTTCATGTGTAACAGCAGCTGCGTCGGAGGAAT  50

seq1  GAACAGACGTCCAATTTTAATCATCGTTACTCTGGAAACCAGAGAGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGACGTCCAATTTTAATCATCGTTACTCTGGAAACCAGAGAGTAAG  100

seq1  TGGCAGTGAGCAGAACCGAAATCACAAACAGCCAAAGGCCAAGGACCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTGAGCAGAACCGAAATCACAAACAGCCAAAGGCCAAGGACCAAG  150

seq1  CAGAATTCTTTGTTTTTGTTTTTGTTTTGTTTTGTTTTTTGTTTTTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCTTTGTTTTTGTTTTTGTTTTGTTTTGTTTTTTGTTTTTTGAT  200

seq1  TTGTTTTTGTTTTTTCCACTGCCTTTGCCTTTAGAAAGAGAAGACCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGTTTTTTCCACTGCCTTTGCCTTTAGAAAGAGAAGACCCAGA  250

seq1  TTCAGTGCTTTGAGCTGCAAATCCCTTGTAAACACTGAAAGATCTGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGCTTTGAGCTGCAAATCCCTTGTAAACACTGAAAGATCTGAGAA  300

seq1  AGTGGAGACAGGGAAGGGGTGTGGGGGTAGAGGA  334
      ||||||||||||||||||||||||||||||||||
seq2  AGTGGAGACAGGGAAGGGGTGTGGGGGTAGAGGA  334

seq1: chr16_25967999_25969244
seq2: B6Ng01-108N10.g_67_1254 (reverse)

seq1  CCACTTTAAACCACCATAGTGTTCCATGAATATTTCACCACTGAAGAAAA  50
      |||||   ||||||     |||||||||||   |||    ||||   |||
seq2  CCACT---AACCAC----ATGTTCCATGAA---TTC----CTGA--GAAA  34

seq1  TGGGTAAGCTAAAATTGAATGCACAAAACATGGAGAGAGTCTGAAATTCC  100
      |||   ||||  ||||| ||||||||    |||||  ||||||||||   
seq2  TGG--TAGCT--AATTG-ATGCACAA---CTGGAGGAAGTCTGAAAT---  73

seq1  CTTACCTATGCACATGTCTCAGCTGCTTAGATTTTGCAGGAAGAAAGAGA  150
        ||||||||| || ||| ||||||||||||  ||||| ||||||||| |
seq2  -CTACCTATGC-CA-GTC-CAGCTGCTTAGA--TTGCA-GAAGAAAGA-A  115

seq1  CTTTGTAATCAATAATTTATAATTCATAAGTTCTTCTTTTTGTGATTTAG  200
      | |||| ||| |||  |||||  ||||||||   || |||||||||||||
seq2  C-TTGT-ATC-ATA--TTATA--TCATAAGT--CTCCTTTTGTGATTTAG  156

seq1  TGTTCTTATAGTGAGATTGATCTTTGGTGTAATGATCAAAAGAATCTAAC  250
      ||||| |||||||||| ||||| |||||||||||||| ||||||||| ||
seq2  TGTTC-TATAGTGAGA-TGATC-TTGGTGTAATGATC-AAAGAATCT-AC  201

seq1  TATATCGTCTGTGCGTGCTAAGGATGCTGGTTTTTGAAGGCATTTTTTTT  300
      ||||||||||||||||||||  |||||||  ||||||||||| |||||||
seq2  TATATCGTCTGTGCGTGCTA--GATGCTG--TTTTGAAGGCA-TTTTTTT  246

seq1  GACTGTTAATAAAATAGTTGACTGTGACATTTGATTTAAACACTACTGAA  350
      ||||| |||| |||||||||||||||||| ||||||||||||||||||||
seq2  GACTG-TAAT-AAATAGTTGACTGTGACA-TTGATTTAAACACTACTGAA  293

seq1  TATAAATATCCATTTGGAGTTAAAGGGTTCATGGCTTATCCTTAACAGTT  400
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATAAATATCCATTTGGAG-TAAAGGGTTCATGGCTTATCCTTAACAGTT  342

seq1  TATACCAATCTGCATGCACATGTGTACCCGTTTGGGAGTTCGTGCTTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAATCTGCATGCACATGTGTACCCGTTTGGGAGTTCGTGCTTAGC  392

seq1  CTAAGCACTCTGGCTCCTGGAAGCCATTGATCTGTCTGTGATGTGAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCACTCTGGCTCCTGGAAGCCATTGATCTGTCTGTGATGTGAATGC  442

seq1  TTTGGGGACTCGGGCTGGAAGTTCCCATCAGGTCACTCGACAGGACCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGACTCGGGCTGGAAGTTCCCATCAGGTCACTCGACAGGACCTCT  492

seq1  AGGCTTTGATTCCACACCTAACATTTTTTAAATGACTGTGATGAAGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGATTCCACACCTAACATTTTTTAAATGACTGTGATGAAGTTCT  542

seq1  TAAAAACCCCGTTTCTCACTTTGCTCATCTTCAAAATGGACTGAAATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACCCCGTTTCTCACTTTGCTCATCTTCAAAATGGACTGAAATGGC  592

seq1  GACTTATGCTTTAGTATTTTCATTATGTATAGACCACCAGAACCCGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTATGCTTTAGTATTTTCATTATGTATAGACCACCAGAACCCGCTTT  642

seq1  ACCTCTTGAGTTCTTGAGCTCAGAACTACTTAAAATTCAGCAATCGGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTGAGTTCTTGAGCTCAGAACTACTTAAAATTCAGCAATCGGTAA  692

seq1  GATCCTGGGAAGATGGTAAGACTGAATTTAAAATGCTAAACCAATTTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGGGAAGATGGTAAGACTGAATTTAAAATGCTAAACCAATTTTAG  742

seq1  GAAGAGGGTTACTTACAGTCACGGTTTTAGCATCCATTTCTGTGAAGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGTTACTTACAGTCACGGTTTTAGCATCCATTTCTGTGAAGATG  792

seq1  AATTCCCCTCCGTCAAAGTCGTCATTCATATACAGGAGAGCACTGCAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCCTCCGTCAAAGTCGTCATTCATATACAGGAGAGCACTGCAAGG  842

seq1  AGGGGGTGGGGCAGTCAGTGACAATACAGTCCTCAGCAGCCTCATAGTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTGGGGCAGTCAGTGACAATACAGTCCTCAGCAGCCTCATAGTAA  892

seq1  AATACAGACGACCAGTGAAGGGAGCCACCTGAATGGGGAGTTACCTTTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGACGACCAGTGAAGGGAGCCACCTGAATGGGGAGTTACCTTTGA  942

seq1  TGTTGGTCCCCCCAACCCTTGAAATTAAGCTCAGGGGTGTCTGGCTTATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTCCCCCCAACCCTTGAAATTAAGCTCAGGGGTGTCTGGCTTATA  992

seq1  CTCTGGATGCTTATTGGTTCCGTTTCCATATGGTTTTGGCCTTGTTTCAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGATGCTTATTGGTTCCGTTTCCATATGGTTTTGGCCTTGTTTCAA  1042

seq1  TGCTCATTTGACATTGTCAACAGTTAGTCAGGCTTGATTTCAGATAGCTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTTGACATTGTCAACAGTTAGTCAGGCTTGATTTCAGATAGCTT  1092

seq1  CTAAATCCAGCCACATTGCTTATAACCCTCGTTTTCCCAGATATAAAAGG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCCAGCCACATTGCTTATAACCCTCGTTTTCCCAGATATAAAAGG  1142

seq1  AACCTTGGGGGATGGGCTTTCTTTCCTTAGCTTAGGCAATGAATTC  1246
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGGGGGATGGGCTTTCTTTCCTTAGCTTAGGCAATGAATTC  1188