BAC Information

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BAC

Clone NameB6Ng01-110L08
Chromosome1 (Build37)16 (Build37)
Map Location 61,720,721 - 61,721,25264,022,697 - 64,023,698
singlet/doubletsingletsinglet
Overlap genePard3b
Upstream geneEif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream geneLOC667592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110L08.bB6Ng01-110L08.g
ACCDH917256DH917257
length1,012988
definitionDH917256|Mus musculus domesticus DNA, BAC clone: B6Ng01-110L08, 5' end.DH917257|Mus musculus domesticus DNA, BAC clone: B6Ng01-110L08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,720,721 - 61,721,252)(64,022,697 - 64,023,698)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcatatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcccgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgttcatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttccttttttctagagc
tttagatgtgtgtcagctgctagtatgtgctgtctcccgtttctcttgag
cactcagagctatgagtttcctctagaatgctttcatgtgtcccatagtt
tggtacgtgtgg
gaattcaatgagtctacaaatagaaaattatttttaaattctaactcaga
agtaccccccttttttttcttctctgtgtgtgcatgaaagagagagagag
agagagagagagagagagagagagagagagagagagaggcagaggcagag
tatgtttatgtgcatgtatgtgtccaggtgcactcacccataaaggatgt
ggaagccaagaattgacatccagatactatcttcaatttcttctacacct
taacttttagatagtatcttttactctatccgcaactgtccttgcttttt
ccaatatatgaattggccagtgagcctttgggttttgctttttttctagc
cctcagtcctgggatcagatgacccaagctctcatttttaatttgttttt
tttttttttttcggagggggggggaatccaagctcaggtcctccttatta
cataatcagcacttccctgcctgagccactctccatattttcttatgtgc
atatgtatgtgagaatatgtgaagatcagaaaataaattactcctgagga
ttgaactcagtccatcaggctcgaaccgccacagcttgtgttcttggcta
ctttaggtcagggatggaaagatggctcagcaatgaaagcttttgccaga
cagtttggaggcccagaattcagatctctagggcctagagaaaagccagc
ttgtggtcttagggcccacttgtaattcctattctcaaagagaggagctg
tgtgatcagagcattttggcttgccagacgagtcatacagggagctctga
attcaactgagagaccctgcctcaatgactagggatgagattagtaaatg
aagacttgcatgtctacataggcgcacatttctgggtatacatgcttacc
cacctatacatgaacatgtgcacacatgcacatactacacatatatactg
agagaaagtagtagttaactgcatacgatatcaatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61720721_61721252
seq2: B6Ng01-110L08.b_43_574 (reverse)

seq1  GTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTAT  50

seq1  TAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAG  100
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TAATAGTCTCCCAACCAAAAAAAGCCCGGGACCAGATGGGTTTAGTGCAG  100

seq1  AGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTA  150

seq1  TTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGC  200

seq1  CACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGA  250

seq1  ACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAA  300

seq1  ATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGA  350

seq1  CCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAAT  400

seq1  CCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATG  450

seq1  ATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATT  500

seq1  CATGATAAAAGTTTTGGAAAGATCAGGAATTC  532
      ||||||||||||||||||||||||||||||||
seq2  CATGATAAAAGTTTTGGAAAGATCAGGAATTC  532

seq1: chr16_64022697_64023698
seq2: B6Ng01-110L08.g_68_1055 (reverse)

seq1  AATATTGAATTATCCGTATGCAGTTTAAACTTACCTACCTTTTCTCTTCA  50
      ||||||||  ||| |||||||||||  ||||   |||| || ||||    
seq2  AATATTGA--TAT-CGTATGCAGTT--AACT--ACTACTTTCTCTC----  39

seq1  AGTATAATATGTGTAGTATGTGCATGTGTGCACATGTTCATGTATAGGTG  100
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAT-ATATGTGTAGTATGTGCATGTGTGCACATGTTCATGTATAGGTG  88

seq1  GGTAAGCATGTATACCCAGAAATGTGCGCCTATGTAGACATTGCAAGTCT  150
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGTAAGCATGTATACCCAGAAATGTGCGCCTATGTAGACA-TGCAAGTCT  137

seq1  TCATTTACTAATCTCATCCCTAGTCATTGAGGCAGGGTCTCTCAGTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTACTAATCTCATCCCTAGTCATTGAGGCAGGGTCTCTCAGTTGAA  187

seq1  TTCAGAGCTCCCCTGTATGACTCGTCTGGCAAGCCAAAATGCTCTGATCA  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGCT-CCCTGTATGACTCGTCTGGCAAGCCAAAATGCTCTGATCA  236

seq1  CACAGCTCCTCTCTTTGAGAATAGGAATTACAAGTGGGCCCTAAGACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTCCTCTCTTTGAGAATAGGAATTACAAGTGGGCCCTAAGACCAC  286

seq1  AAGCTGGCTTTTCTCTAGGCCCTAGAGATCTGAATTCTGGGCCTCCAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGCTTTTCTCTAGGCCCTAGAGATCTGAATTCTGGGCCTCCAAAC  336

seq1  TGTCTGGCAAAAGCTTTCATTGCTGAGCCATCTTTCCATCCCTGACCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGCAAAAGCTTTCATTGCTGAGCCATCTTTCCATCCCTGACCTAA  386

seq1  AGTAGCCAAGAACACAAGCTGTGGCGGTTCGAGCCTGATGGACTGAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCCAAGAACACAAGCTGTGGCGGTTCGAGCCTGATGGACTGAGTTC  436

seq1  AATCCTCAGGAGTAATTTATTTTCTGATCTTCACATATTCTCACATACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCAGGAGTAATTTATTTTCTGATCTTCACATATTCTCACATACAT  486

seq1  ATGCACATAAGAAAATATGGAGAGTGGCTCAGGCAGGGAAGTGCTGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATAAGAAAATATGGAGAGTGGCTCAGGCAGGGAAGTGCTGATTA  536

seq1  TGTAATAAGGAGGACCTGAGCTTGGATTCCCCCCCCCTCCGAAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAAGGAGGACCTGAGCTTGGATTCCCCCCCCCTCCGAAAAAAAAA  586

seq1  AAAAAAACAAATTAAAAATGAGAGCTTGGGTCATCTGATCCCAGGACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAATTAAAAATGAGAGCTTGGGTCATCTGATCCCAGGACTGA  636

seq1  GGGCTAGAAAAAAAGCAAAACCCAAAGGCTCACTGGCCAATTCATATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGAAAAAAAGCAAAACCCAAAGGCTCACTGGCCAATTCATATATT  686

seq1  GGAAAAAGCAAGGACAGTTGCGGATAGAGTAAAAGATACTATCTAAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGCAAGGACAGTTGCGGATAGAGTAAAAGATACTATCTAAAAGT  736

seq1  TAAGGTGTAGAAGAAATTGAAGATAGTATCTGGATGTCAATTCTTGGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGTAGAAGAAATTGAAGATAGTATCTGGATGTCAATTCTTGGCTT  786

seq1  CCACATCCTTTATGGGTGAGTGCACCTGGACACATACATGCACATAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCCTTTATGGGTGAGTGCACCTGGACACATACATGCACATAAACA  836

seq1  TACTCTGCCTCTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGCCTCTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  886

seq1  CTCTCTCTCTCTCTTTCATGCACACACAGAGAAGAAAAAAAAGGGGGGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTTTCATGCACACACAGAGAAGAAAAAAAAGGGGGGTA  936

seq1  CTTCTGAGTTAGAATTTAAAAATAATTTTCTATTTGTAGACTCATTGAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGTTAGAATTTAAAAATAATTTTCTATTTGTAGACTCATTGAAT  986

seq1  TC  1002
      ||
seq2  TC  988