BAC Information

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BAC

Clone NameB6Ng01-111P17
Chromosome16 (Build37)
Map Location 66,571,613 - 66,708,618
singlet/doubletdoublet
Overlap geneCadm2
Upstream geneEG383186, Vgll3, LOC664846, LOC100039035
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111P17.bB6Ng01-111P17.g
ACCDH918173DH918174
length1,1231,192
definitionDH918173|Mus musculus domesticus DNA, BAC clone: B6Ng01-111P17, 5' end.DH918174|Mus musculus domesticus DNA, BAC clone: B6Ng01-111P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,571,613 - 66,572,749)(66,707,411 - 66,708,618)
sequence
gaattcagaataggtgcctatgagccaaattgaaagccaacattttagtt
tagtttctgagttaataataatccaccagtaagctttcaacttatgttgc
tgtgttccaattaaaggagctgaaatgttttgtttatagaacctcctaaa
aaaaaactcatgatttaaaataaaaaaagggaaattaagacttcaaatat
tgtgagctttatcattctatgttgtacaacttcaaactaaattcatggta
ggaataaattagggtctacagtaatggctctgcagagaaaagcacataat
ccttccatatagtaaatagttcttattagtagtacttagttcatcatata
gtcaccagatattaataacctaggttctccaggcaaacatagaggaaaaa
gagtcaacctggcaagataaaacagattatgctatcttcttagctaatga
tggctacagtttattgaagaaactttctaagactaaactggacaggttaa
gagtcaaggaccaacaacgcttctggaaggtgatgttacttaattatttc
aaagcataaataattgtttcttttcttttcttaacaaaaacatcctaagt
ggaaacacattttgttttcttcttccagcaggaatcaaccatattccaaa
gtgggcctcaacagaaatagattctttatgttggtttgtacaggcttttg
ttgttgttgttgttgggtttcttgtttggttgtttgctttttgttgttat
attttgttttgttttgtttttaaagagagagaaagagcttgaagttgggt
aagtagagaacaagggaggattgggaaagtggttggtgaattagaaactc
tataattgggaaattatattgcatgaaaattaaaaaaaataatctatttg
cagtaatttttgcagaagtcaagtgacattatctcattggctgtcattaa
tcttagttatatcatttatttcgatacgttttatgtttttcatacaaaat
attctggtaccagatatctgatggtcattttataataaaaatagaggcct
gcttcgctatctctagattaaaaaaactattggaactctattaaaatata
atggtaatgtaacagaatggaac
gaattctcttatccactatgcaatctcccctaccccttaactgccacatt
tttttccttttccattttttattaggtatttagctcatttacatttccaa
tgctataccaaaagtcccccatacccacccaccaccactcccctacacac
ccactccccctttttggccctggcgttcccctgtactggggcatataaag
tttgcgtgtccaatgggcctctctttccagtgatggccgactaggccatc
ttttgatacatatgcagctagagtcaagagctccggggtactggttagtt
cataatgttgttccacctatagggttgcagatccctttagctccttgggt
tctttctctagctcctccattgggagccctgtgatccatccattagctga
ctgtgagcatccgccacattttaatagaggggatttcttccctagagaca
ttgagtggttacagaaattgaaatctgtgtgtttaatttggtaaagtaag
gtttatattgtcttcaatttaagtagtggaataatattttgtgattggca
tttgtaaattaatgctgagaagcaaactacaaaattacatgagaaaaata
aaaggattctaagcttgtgcttatccataaccctcatggaatataaaata
ctaacatatagaagcaaatccacacaaggaatatttgaattgtcaatatt
ctaatcagcataaaatctagtaatttattttaaatgttttccttgtgttt
acaaattgatgaataaaaattgcctagaaactggtacaaaattatatcaa
gggtcataagaaaaaccaatctccaaaatgtatcatcaaacaatgtaaga
gtttttaagttcttttgtaaggtcttttctcaactgttccttcctttagt
cccctttcttttagagacattcttcactttggactttggaaatagattta
cactcaaatacttactttcttcctgtctctttatttgcctaaactctgat
ttcaaatttgtaaatagctggtgatcattctgaggatgcttaagaagacc
tttgcagcaagagaaactactgaatgaattgatggagtatgcctgagaat
agatgttctttttaaatattattaattatatggtttgaatggagaatagt
aaagaatccttggaatgtcttatttaacttggtgcatactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66571613_66572749
seq2: B6Ng01-111P17.b_50_1172

seq1  GAATTCAGAATAGGTGCCTATGAGCCAAATTGAAAGCCAACATTTTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATAGGTGCCTATGAGCCAAATTGAAAGCCAACATTTTAGTT  50

seq1  TAGTTTCTGAGTTAATAATAATCCACCAGTAAGCTTTCAACTTATGTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTGAGTTAATAATAATCCACCAGTAAGCTTTCAACTTATGTTGC  100

seq1  TGTGTTCCAATTAAAGGAGCTGAAATGTTTTGTTTATAGAACCTCCTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCCAATTAAAGGAGCTGAAATGTTTTGTTTATAGAACCTCCTAAA  150

seq1  AAAAAACTCATGATTTAAAATAAAAAAAGGGAAATTAAGACTTCAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTCATGATTTAAAATAAAAAAAGGGAAATTAAGACTTCAAATAT  200

seq1  TGTGAGCTTTATCATTCTATGTTGTACAACTTCAAACTAAATTCATGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTTTATCATTCTATGTTGTACAACTTCAAACTAAATTCATGGTA  250

seq1  GGAATAAATTAGGGTCTACAGTAATGGCTCTGCAGAGAAAAGCACATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAATTAGGGTCTACAGTAATGGCTCTGCAGAGAAAAGCACATAAT  300

seq1  CCTTCCATATAGTAAATAGTTCTTATTAGTAGTACTTAGTTCATCATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCATATAGTAAATAGTTCTTATTAGTAGTACTTAGTTCATCATATA  350

seq1  GTCACCAGATATTAATAACCTAGGTTCTCCAGGCAAACATAGAGGAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCAGATATTAATAACCTAGGTTCTCCAGGCAAACATAGAGGAAAAA  400

seq1  GAGTCAACCTGGCAAGATAAAACAGATTATGCTATCTTCTTAGCTAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAACCTGGCAAGATAAAACAGATTATGCTATCTTCTTAGCTAATGA  450

seq1  TGGCTACAGTTTATTGAAGAAACTTTCTAAGACTAAACTGGACAGGTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACAGTTTATTGAAGAAACTTTCTAAGACTAAACTGGACAGGTTAA  500

seq1  GAGTCAAGGACCAACAACGCTTCTGGAAGGTGATGTTACTTAATTATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAGGACCAACAACGCTTCTGGAAGGTGATGTTACTTAATTATTTC  550

seq1  AAAGCATAAATAATTGTTTCTTTTCTTTTCTTAACAAAAACATCCTAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATAAATAATTGTTTCTTTTCTTTTCTTAACAAAAACATCCTAAGT  600

seq1  GGAAACACATTTTGTTTTCTTCTTCCAGCAGGAATCAACCATATTCCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACATTTTGTTTTCTTCTTCCAGCAGGAATCAACCATATTCCAAA  650

seq1  GTGGGCCTCAACAGAAATAGATTCTTTATGTTGGTTTGTACAGGCTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCCTCAACAGAAATAGATTCTTTATGTTGGTTTGTACAGGCTTTTG  700

seq1  TTGTTGTTGTTGTTGGGTTTCTTGTTTGGTTGTTTGCTTTTTGTTGTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGTTGGGTTTCTTGTTTGGTTGTTTGCTTTTTGTTGTTAT  750

seq1  ATTTTGTTTTGTTTTGTTTTTAAAGAGAGAGAAAGAGCTTGAAGTTGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTTTGTTTTGTTTTTAAAGAGAGAGAAAGAGCTTGAAGTTGGGT  800

seq1  AAGTAGAGAACAGGGGAGGATT-GGAAAGTGGTTGGTGAATTAGAAACTC  849
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  AAGTAGAGAACAAGGGAGGATTGGGAAAGTGGTTGGTGAATTAGAAACTC  850

seq1  TATAATT-GGAAAATATATTGCATGAAAATTAAAAAAAATAATCTA-TTG  897
      ||||||| ||||| |||||||||||||||||||||||||||||||| |||
seq2  TATAATTGGGAAATTATATTGCATGAAAATTAAAAAAAATAATCTATTTG  900

seq1  CAGTAATTTTTGCCAGAGTCAGGTGACCATATCCTCATTTGCTGTCATTA  947
      |||||||||||||   ||||| |||||  ||| |||||| ||||||||||
seq2  CAGTAATTTTTGCAGAAGTCAAGTGACATTAT-CTCATTGGCTGTCATTA  949

seq1  ATCTTAGTTTATTATCATTTTATTTTGAATAAGGTTTATTGTTTTTTTCA  997
      |||||||||   ||||| ||||||| | ||| | ||||   | |||||||
seq2  ATCTTAGTT--ATATCA-TTTATTTCG-ATACGTTTTA---TGTTTTTCA  992

seq1  TTACAAAAATATTCTGGTACCCAGAATAAATCTGATGGTCATTTTATTAA  1047
       ||| ||||||||||||||||    | | ||||||||||||||||| |||
seq2  -TAC-AAAATATTCTGGTACC----AGATATCTGATGGTCATTTTA-TAA  1035

seq1  TAAAAATTTAAGAGGGCTGTCTTCTCCTATCTCTTAGTATTAAAAAACTA  1097
      |||||||   ||||| ||| ||||  ||||||| ||| |||||||||   
seq2  TAAAAAT---AGAGGCCTG-CTTC-GCTATCTC-TAG-ATTAAAAAAACT  1078

seq1  ATTTGAACTCTAATAAAAAATAAT--TTATG---GTGAATGGAAC  1137
      ||| |||||||| ||||| |||||  | |||     |||||||||
seq2  ATTGGAACTCTATTAAAATATAATGGTAATGTAACAGAATGGAAC  1123

seq1: chr16_66707411_66708618
seq2: B6Ng01-111P17.g_71_1262 (reverse)

seq1  TGAGTATCCACCAAGTAAATTAAGACATTCTCAAGAGTATCTTTACCATC  50
      ||||||| |||||||| || |||||||||| |||| |  ||||||| || 
seq2  TGAGTATGCACCAAGTTAAATAAGACATTC-CAAG-GATTCTTTACTATT  48

seq1  TTCCATTCAAAGACCCATTATAATT-ATAATATTTTAAAAGAACACTCAT  99
       ||||||||||   ||| ||||||| ||||||||| |||||||||   ||
seq2  CTCCATTCAAA---CCA-TATAATTAATAATATTTAAAAAGAACATCTAT  94

seq1  TCTCAAGGCACTACTCCATTCAAATCACTCAGTAGTTCTCTTTGGCTGCA  149
      |||| ||||| ||||||| |||| ||| ||||||||| ||| | ||||||
seq2  TCTC-AGGCA-TACTCCA-TCAATTCATTCAGTAGTT-TCTCTTGCTGCA  140

seq1  AAGTGTC-TCTTTAGCATCCCTCAGAAATGATCCAACAGCTATTTACATA  198
      ||| ||| |||| ||||| |||||| |||||| || |||||||||||| |
seq2  AAG-GTCTTCTTAAGCAT-CCTCAG-AATGAT-CACCAGCTATTTACAAA  186

seq1  TTTGAAATCAGAGTTTAGGCCAAATAAAGAGACAGGAAGAAAGTAAGTAT  248
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTGAAATCAGAGTTTAGG-CAAATAAAGAGACAGGAAGAAAGTAAGTAT  235

seq1  TTGAGTTGTAAATCTTATTTCCATAGTTCCAAAGTGAAGATGTTCTCTAA  298
      ||||| |||||||| |||||||| || |||||||||||||   |||||||
seq2  TTGAG-TGTAAATC-TATTTCCAAAG-TCCAAAGTGAAGAATGTCTCTAA  282

seq1  AAGAAAGGGGACCTAAAGGAAGGAACAGTTGAG-AAAGACCTTACAAAAG  347
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  AAGAAAGGGGA-CTAAAGGAAGGAACAGTTGAGAAAAGACCTTACAAAAG  331

seq1  AACTTAAAAACTCTTACATTGTTTGATGATACATTTTGGAGATTGGTTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAAACTCTTACATTGTTTGATGATACATTTTGGAGATTGGTTTT  381

seq1  TCTTATGACCCTTGATATAATTTTGTACCAGTTTCTAGGCAATTTTTATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGACCCTTGATATAATTTTGTACCAGTTTCTAGGCAATTTTTATT  431

seq1  CATCAATTTGTAAACACAAGGAAAACATTTAAAATAAATTACTAGATTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATTTGTAAACACAAGGAAAACATTTAAAATAAATTACTAGATTTT  481

seq1  ATGCTGATTAGAATATTGACAATTCAAATATTCCTTGTGTGGATTTGCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGATTAGAATATTGACAATTCAAATATTCCTTGTGTGGATTTGCTT  531

seq1  CTATATGTTAGTATTTTATATTCCATGAGGGTTATGGATAAGCACAAGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGTTAGTATTTTATATTCCATGAGGGTTATGGATAAGCACAAGCT  581

seq1  TAGAATCCTTTTATTTTTCTCATGTAATTTTGTAGTTTGCTTCTCAGCAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCCTTTTATTTTTCTCATGTAATTTTGTAGTTTGCTTCTCAGCAT  631

seq1  TAATTTACAAATGCCAATCACAAAATATTATTCCACTACTTAAATTGAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTACAAATGCCAATCACAAAATATTATTCCACTACTTAAATTGAAG  681

seq1  ACAATATAAACCTTACTTTACCAAATTAAACACACAGATTTCAATTTCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATAAACCTTACTTTACCAAATTAAACACACAGATTTCAATTTCTG  731

seq1  TAACCACTCAATGTCTCTAGGGAAGAAATCCCCTCTATTAAAATGTGGCG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACTCAATGTCTCTAGGGAAGAAATCCCCTCTATTAAAATGTGGCG  781

seq1  GATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGAG  831

seq1  CTAGAGAAAGAACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGAACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  881

seq1  ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  931

seq1  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  981

seq1  GGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  1031

seq1  AGGGGGAGTGGGTGTGTAGGGGAGTGGTGGTGGGTGGGTATGGGGGACTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAGTGGGTGTGTAGGGGAGTGGTGGTGGGTGGGTATGGGGGACTT  1081

seq1  TTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGG  1131

seq1  AAAAGGAAAAAAATGTGGCAGTTAAGGGGTAGGGGAGATTGCATAGTGGA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAAAAATGTGGCAGTTAAGGGGTAGGGGAGATTGCATAGTGGA  1181

seq1  TAAGAGAATTC  1208
      |||||||||||
seq2  TAAGAGAATTC  1192