BAC Information

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BAC

Clone NameB6Ng01-112D07
Chromosome16 (Build37)
Map Location 47,157,171 - 47,292,990
singlet/doubletdoublet
Overlap genenone
Upstream genePvrl3, LOC628757
Downstream geneLOC628776, EG667741, EG639644, EG637273, Dppa4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112D07.bB6Ng01-112D07.g
ACCDH918332DH918333
length1,0911,199
definitionDH918332|Mus musculus domesticus DNA, BAC clone: B6Ng01-112D07, 5' end.DH918333|Mus musculus domesticus DNA, BAC clone: B6Ng01-112D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,291,901 - 47,292,990)(47,157,171 - 47,158,382)
sequence
gaattcactcaaatatagttattgaagacacttataatatcttagaattc
tcctgacatatatgcacactagagtcattagttactgcatcatatatatt
ttcttggtcatattatctgaagttggatctttttttctttttgtttactt
ttttcaaattacttttattttttacagtcctgtcccttgtggccctcctc
ccattacagttcctcatcccattcctactcccccctgtctccaagaggat
gcccccccacaagacctctccactccctggggtttcaaagctcttgtggg
ttaaatgtatcttctccctctgaggccagaccaagcaatactctgctata
tatgtattggaaccttggaccagctcatgtatgctgcctggttgatggct
cagtgtctgagatatctcaggggttagagttagttaagactgctggtctc
cctatagggacatactcctcctcagcttcttccagccttaccctatttca
accagagggaacccagcccattggttgggtcttaagtatctgcatctgtc
tcagtcagatgcttgttgggcctgtcagaagacagtcatacttagctcct
atctgtatgcatacaatagcaaaagtaatagtgtcaggccttggagcttc
cccttgagatggatcccaagttgggctggtcactggaccacctttccctc
agtctcttctcaaattttgtccctgcagttctttttgacaggtacaattc
tgggtctgaatgttggctgtcggatttgctttcttgctagagtttctggt
tagagaacatattactctgagtgggtatagtagagactcatcttttgctt
gggaaatggtgcttcagaatctgagggacttgctctgtacaaatctgatt
gataactacagaaatcatgctgggaaatgggtgtcttcacaattttatgt
cccaaatatgtgtattatggacaaaatttgactaaatgaaaaatgcatta
ttagcattgtggacaagaataaaagattatttgaattcaatcagtaataa
ttctggatttcagtaattcaaaatatattaattacacctct
gaattcttcagagaacaaattggtgatgacacttttatgtctgagaaata
tgtaactattgttaaaagaaaaggggctattttaaatcaaatatacaggg
aaaaggaagaaggctataattataaacttagtccatttgggactctacaa
agggacaagagtaaaaagttcacaagtacctaatattttatcaaggctgt
acttgaagaagatatgaccacaaattttataaaatatttgattctacaga
atgttagaggctcttgtgctggaaatgcagtgggtagattgacaatattt
aagtgtacagttatgaaaattatgattgttatcagatgagacttttgagt
taagcagaattacaatacagaatggcatttaaaaaatatatgatgcacat
atagtaatatattttcagttaggtatattcatgctacaaagaaaaaatac
tttaatataatggtagtatttagggggcaaagaaataagattattaggca
atgttcatattacaattttttgtatttttatgtatagaacaacatttata
acatttatcatggacatttgtcatggtaacagcatgatattattgtaaat
agcaatgcctattttgatgatatcaatgtgttactatttactaggataag
acacacatgagtgaatgtaactaaattaattcaaataagctttatttaag
tattatcatgaacttgcatggaaaaagcaataactttagaaccgatatag
attcatatccagtgagtgacagaggctcatggagcccttagctcactgaa
ggaataacataaaaatgtatcaaatattttgtaactgcaatctccagtca
atactgttttacgacgcacagaagcaggagagaaaaaggcaaccatatgg
ttgaatactatgattgggttagcagtcattagaagactgcagaccagcca
gaagttctgtatagtgatttctctgttcttcaggtctctcacactgctca
tcttttattcgtgaagaattaacttcagaagaatgtttccttttctttta
ttttactaatctttttcttacagtcagatttatcccccctcttcggtaca
acctcttgactgtccaatctcataacttccaatccccttaccctctctca
gaggatgccaccccccatcctgatcacggactcacactgcctgggcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_47291901_47292990
seq2: B6Ng01-112D07.b_51_1141 (reverse)

seq1  AGAGGTGT-ATTAATATATTTTG-ACTACTGAAATCCAGAATTATTACTG  48
      |||||||| |||||||||||||| | ||||||||||||||||||||||||
seq2  AGAGGTGTAATTAATATATTTTGAATTACTGAAATCCAGAATTATTACTG  50

seq1  ATTGAATTCACATAATCTTTTATTCTTGT-CACAATGCTAATAATGCATT  97
      |||||||||| |||||||||||||||||| |||||||||||||||||| |
seq2  ATTGAATTCAAATAATCTTTTATTCTTGTCCACAATGCTAATAATGCA-T  99

seq1  TTTTCATTTAGTCCAAATTTTGTCCATATTACACATATTTGGGACATAAA  147
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  TTTTCATTTAGT-CAAATTTTGTCCATAATACACATATTTGGGACATAAA  148

seq1  ATTGTGAAGACACCCATTTCCCAGCATGATTTCTGTAGTTATCAATCAGA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAAGACACCCATTTCCCAGCATGATTTCTGTAGTTATCAATCAGA  198

seq1  TTTGTACAGAGCAAGTCCCTCAGATTCTGAAGCACCATTTCCCAAGCAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACAGAGCAAGTCCCTCAGATTCTGAAGCACCATTTCCCAAGCAAA  248

seq1  AGATGAGTCTCTACTATACCAACTCAGAGTAATATGTTCTCTAACCAGAA  297
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGATGAGTCTCTACTATACCCACTCAGAGTAATATGTTCTCTAACCAGAA  298

seq1  ACTCTAGCAAGAAAGCAAATCCGACAGCCAACATTCAGACCCAGAATTGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGCAAGAAAGCAAATCCGACAGCCAACATTCAGACCCAGAATTGT  348

seq1  ACCTGTCAAAAAGAACTGCAGGGACAAAATTTGAGAAGAGACTGAGGGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCAAAAAGAACTGCAGGGACAAAATTTGAGAAGAGACTGAGGGAA  398

seq1  AGGTGGTCCAGTGACCAGCCCAACTTGGGATCCATCTCAAGGGGAAGCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTCCAGTGACCAGCCCAACTTGGGATCCATCTCAAGGGGAAGCTC  448

seq1  CAAGGCCTGACACTATTACTTTTGCTATTGTATGCATACAGATAGGAGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCTGACACTATTACTTTTGCTATTGTATGCATACAGATAGGAGCT  498

seq1  AAGTATGACTGTCTTCTGACAGGCCCAACAAGCATCTGACTGAGACAGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGACTGTCTTCTGACAGGCCCAACAAGCATCTGACTGAGACAGAT  548

seq1  GCAGATACTTAAGACCCAACCAATGGGCTGGGTTCCCTCTGGTTGAAATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATACTTAAGACCCAACCAATGGGCTGGGTTCCCTCTGGTTGAAATA  598

seq1  GGGTAAGGCTGGAAGAAGCTGAGGAGGAGTATGTCCCTATAGGGAGACCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGGCTGGAAGAAGCTGAGGAGGAGTATGTCCCTATAGGGAGACCA  648

seq1  GCAGTCTTAACTAACTCTAACCCCTGAGATATCTCAGACACTGAGCCATC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTTAACTAACTCTAACCCCTGAGATATCTCAGACACTGAGCCATC  698

seq1  AACCAGGCAGCATACATGAGCTGGTCCAAGGTTCCAATACATATATAGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGCAGCATACATGAGCTGGTCCAAGGTTCCAATACATATATAGCA  748

seq1  GAGTATTGCTTGGTCTGGCCTCAGAGGGAGAAGATACATTTAACCCACAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTGCTTGGTCTGGCCTCAGAGGGAGAAGATACATTTAACCCACAA  798

seq1  GAGCTTTGAAACCCCAGGGAGTGGAGAGGTCTTGTGGGGGGGCATCCTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTGAAACCCCAGGGAGTGGAGAGGTCTTGTGGGGGGGCATCCTCT  848

seq1  TGGAGACAGGGGGGAGTAGGAATGGGATGAGGAACTGTAATGGGAGGAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAGGGGGGAGTAGGAATGGGATGAGGAACTGTAATGGGAGGAGG  898

seq1  GCCACAAGGGACAGGACTGTAAAAAATAAAAGTAATTTGAAAAAAGTAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAAGGGACAGGACTGTAAAAAATAAAAGTAATTTGAAAAAAGTAAA  948

seq1  CAAAAAGAAAAAAAGATCCAACTTCAGATAATATGACCAAGAAAATATAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGAAAAAAAGATCCAACTTCAGATAATATGACCAAGAAAATATAT  998

seq1  ATGATGCAGTAACTAATGACTCTAGTGTGCATATATGTCAGGAGAATTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCAGTAACTAATGACTCTAGTGTGCATATATGTCAGGAGAATTCT  1048

seq1  AAGATATTATAAGTGTCTTCAATAACTATATTTGAGTGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTATAAGTGTCTTCAATAACTATATTTGAGTGAATTC  1091

seq1: chr16_47157171_47158382
seq2: B6Ng01-112D07.g_67_1265

seq1  GAATTCTTCAGAGAACAAATTGGTGATGACACTTTTATGTCTGAGAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGAGAACAAATTGGTGATGACACTTTTATGTCTGAGAAATA  50

seq1  TGTAACTATTGTTAAAAGAAAAGGGGCTATTTTAAATCAAATATACAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTATTGTTAAAAGAAAAGGGGCTATTTTAAATCAAATATACAGGG  100

seq1  AAAAGGAAGAAGGCTATAATTATAAACTTAGTCCATTTGGGACTCTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAGAAGGCTATAATTATAAACTTAGTCCATTTGGGACTCTACAA  150

seq1  AGGGACAAGAGTAAAAAGTTCACAAGTACCTAATATTTTATCAAGGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAAGAGTAAAAAGTTCACAAGTACCTAATATTTTATCAAGGCTGT  200

seq1  ACTTGAAGAAGATATGACCACAAATTTTATAAAATATTTGATTCTACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAGAAGATATGACCACAAATTTTATAAAATATTTGATTCTACAGA  250

seq1  ATGTTAGAGGCTCTTGTGCTGGAAATGCAGTGGGTAGATTGACAATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGAGGCTCTTGTGCTGGAAATGCAGTGGGTAGATTGACAATATTT  300

seq1  AAGTGTACAGTTATGAAAATTATGATTGTTATCAGATGAGACTTTTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTACAGTTATGAAAATTATGATTGTTATCAGATGAGACTTTTGAGT  350

seq1  TAAGCAGAATTACAATACAGAATGGCATTTAAAAAATATATGATGCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGAATTACAATACAGAATGGCATTTAAAAAATATATGATGCACAT  400

seq1  ATAGTAATATATTTTCAGTTAGGTATATTCATGCTACAAAGAAAAAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAATATATTTTCAGTTAGGTATATTCATGCTACAAAGAAAAAATAC  450

seq1  TTTAATATAATGGTAGTATTTAGGGGGCAAAGAAATAAGATTATTAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATAATGGTAGTATTTAGGGGGCAAAGAAATAAGATTATTAGGCA  500

seq1  ATGTTCATATTACAATTTTTTGTATTTTTATGTATAGAACAACATTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATATTACAATTTTTTGTATTTTTATGTATAGAACAACATTTATA  550

seq1  ACATTTATCATGGACATTTGTCATGGTAACAGCATGATATTATTGTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATCATGGACATTTGTCATGGTAACAGCATGATATTATTGTAAAT  600

seq1  AGCAATGCCTATTTTGATGATATCAATGTGTTACTATTTACTAGGATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGCCTATTTTGATGATATCAATGTGTTACTATTTACTAGGATAAG  650

seq1  ACACACATGAGTGAATGTAACTAAATTAATTCAAATAAGCTTTATTTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATGAGTGAATGTAACTAAATTAATTCAAATAAGCTTTATTTAAG  700

seq1  TATTATCATGAACTTGCATGGAAAAAGCAATAACTTTAGAACCGATATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCATGAACTTGCATGGAAAAAGCAATAACTTTAGAACCGATATAG  750

seq1  ATTCATATCCAGTGAGTGACAGAGGCTCATGGAGCCCTTAGCTCACTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATCCAGTGAGTGACAGAGGCTCATGGAGCCCTTAGCTCACTGAA  800

seq1  GGAATAACATAAAAATGTATCAAATATTTTGTAACTGCAATCTCCAGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAACATAAAAATGTATCAAATATTTTGTAACTGCAATCTCCAGTCA  850

seq1  ATACTGTTTTACGACGCACAGAAGCAGGAGAGAAAAAGGCAACCATATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTTTTACGACGCACAGAAGCAGGAGAGAAAAAGGCAACCATATGG  900

seq1  TTGAATACTATGATTGGGTTAGCAGTCATTAGAAGACTGCAGACCAGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATACTATGATTGGGTTAGCAGTCATTAGAAGACTGCAGACCAGCCA  950

seq1  GAAGTTCTGTATAGTTGATTTCTCTGTTCTTCAGGTCTCTCACACTGCTC  1000
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAAGTTCTGTATAG-TGATTTCTCTGTTCTTCAGGTCTCTCACACTGCTC  999

seq1  ATC-TCTATTCGTGAAGAATTAACTTCAGAAGAATGTTTCCTTTTCTTTT  1049
      ||| | ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTATTCGTGAAGAATTAACTTCAGAAGAATGTTTCCTTTTCTTTT  1049

seq1  TTAATTTTACTTAATC-TTTTCTTACAGTCCAGATTTTATCCCCCTC-TC  1097
         ||||||| ||||| |||||||||||| |||||||   ||||||| ||
seq2  ---ATTTTAC-TAATCTTTTTCTTACAGT-CAGATTTATCCCCCCTCTTC  1094

seq1  GGTACACCCTC-TGACTGTTCCACATCTCAT-ACCTCCCATCCCCCTACC  1145
      |||||| |||| |||||| |||| ||||||| || ||| |||||| ||||
seq2  GGTACAACCTCTTGACTG-TCCA-ATCTCATAACTTCCAATCCCCTTACC  1142

seq1  CTCTCTCCAAGAGGATGCCCCACCCCCACTCTGCATCCCACCAGACCTCA  1195
      |||||||  |||||||||| | ||||||  ||| ||| |    |  ||||
seq2  CTCTCTC--AGAGGATGCCAC-CCCCCATCCTG-ATCAC----GGACTCA  1184

seq1  CCACTGCCTGGGGCCTC  1212
       |||||||| |||||||
seq2  -CACTGCCT-GGGCCTC  1199