BAC Information

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BAC

Clone NameB6Ng01-113K04
Chromosome16 (Build37)
Map Location 87,012,542 - 87,164,812
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040025, LOC100039780
Downstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113K04.bB6Ng01-113K04.g
ACCDH919380DH919381
length1181,254
definitionDH919380|Mus musculus domesticus DNA, BAC clone: B6Ng01-113K04, 5' end.DH919381|Mus musculus domesticus DNA, BAC clone: B6Ng01-113K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,012,542 - 87,012,659)(87,163,562 - 87,164,812)
sequence
ctaagttgtatgatagcaaaagaggaaaaatatcactgaaaaaaatctac
aatgttttagcaggtgattgctgcactggaaaggatccagtggagggggg
gcagggggggcggggggg
gaattctaactgaagtgaccttacacactagagaccaatagttttctcca
tttcttgcatttaagggaatatgtttcagatataatgaacgccatcttta
tagactcatgaaggattcagggggttcatgtatttctattctgtcattct
ttattctaagacaaattcagacaagattatttagacacgatggctctcag
caacaagaagcctgtccatatgcagagggagtaagaaaaatctaacatag
gcttctccattgatcttattgggccagctttggccatgggccagaccagc
acctatcacatttgctgggcaatgatggacctaagactagattagtctaa
tcgatgtagggtttccctagtgtagaagttagaaaaaaaacacctgaaaa
agttagagttctaggaggaaaaatgaaagaaaagaaaggatattgttgtg
taggtaatcagcagcattactgagaattactaatgtttacttatttttta
tttctattttcatttttccaagacatggtttctctgtatagctctgggtg
tcctggaatttcctatgtagaccaggctgttcttgaattcagaaatctac
ctgcctactttttgttttaataaagctggaaagtattatttataccttaa
gtttgggaaaccaaacaaatggtatggataactttttaaatagtaagaat
ctctgacattatagaggaaatgtagtgaagttactccagaaacatggctg
gctattcaacttatattcaaggtctcaaatatgggaatgcaattatttaa
ttctctgttctatgctcaagaaaactttgtcagacatgttttggaatgtt
tggatctgattgtttttactagctttccatattttgatgttttctttctc
catcctacctagctcttttctctaaattctcatttcatatttcttctaca
taaaaataatagcaacctaaccacagagcaagagcctcatgttgtgtttt
cctgtattgattattagcagataatcctttgagatgattgatgtaagaga
tttaaaaaaaaacttgttaaccttggaaaatcaaggtctgaccttttgta
atatggtctgggttctgtattacaacgagaaccaaatggaaaacccggga
gtgaatttgattggacttagtcaatccataataaggcttctctggatact
atatctattaaggaacaagggtgaaactagtatacatcacatcatgtaca
ccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_87012542_87012659
seq2: B6Ng01-113K04.b_51_168

seq1  CTAAGTTGTATGATAGCAAAAGAGGAAAAATATCACTGAAAAAAATCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTGTATGATAGCAAAAGAGGAAAAATATCACTGAAAAAAATCTAC  50

seq1  AATGTTTTAGCAGGTGATTGCTGCACTGGAAAGGATCCAGTGGAGGGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTAGCAGGTGATTGCTGCACTGGAAAGGATCCAGTGGAGGGGGG  100

seq1  GCAGGGGGGGCGGGGGGG  118
      ||||||||||||||||||
seq2  GCAGGGGGGGCGGGGGGG  118

seq1: chr16_87163562_87164812
seq2: B6Ng01-113K04.g_68_1321 (reverse)

seq1  GTGGTGTACGTTA-GTGTTATCTAGT--TTTCAGCCATTGTTCCTTAAAT  47
      ||||||||| | | ||| | | || |  ||||| || ||||||||| |||
seq2  GTGGTGTACATGATGTGATGTATACTAGTTTCA-CCCTTGTTCCTT-AAT  48

seq1  AGATA-AGTATCAATGGAAGAGCTTTTATTATAGATTGACCTAAGTCCAA  96
      ||||| |||||| |  ||||     ||||||| |||||| ||||||||||
seq2  AGATATAGTATCCAGAGAAG---CCTTATTATGGATTGA-CTAAGTCCAA  94

seq1  TCAAAATTCATTCCTGTGTTTCCTTTTTGTCTACACTATGTAATTACCAG  146
      || ||||||| ||| | |||| |  ||||  | | |  ||||||   |||
seq2  TC-AAATTCACTCCCGGGTTTTCCATTTG-GTTCTCGTTGTAAT--ACAG  140

seq1  AA--CAGAACATTATTACAAAA-GTCAGACCATGATTTT-CAAAGTATAC  192
      ||  |||| || |||||||||| |||||||| ||||||| ||| ||  ||
seq2  AACCCAGACCA-TATTACAAAAGGTCAGACCTTGATTTTCCAAGGTTAAC  189

seq1  CAGTTTTTTTTT-AATCTCTTACATCAATCATCTCAAAGGA-TATCTGCT  240
       ||||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  AAGTTTTTTTTTAAATCTCTTACATCAATCATCTCAAAGGATTATCTGCT  239

seq1  AAT-ATCATTACAGGGAAACACAACATGA-GCTC-TGCTCTGTGGTTAGG  287
      ||| |||| |||||| ||||||||||||| |||| |||||||||||||||
seq2  AATAATCAATACAGGAAAACACAACATGAGGCTCTTGCTCTGTGGTTAGG  289

seq1  TTGCTATTA-TTTTATGTAGAAGAAATATGGAATGAGAATTTAGAGAAAA  336
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  TTGCTATTATTTTTATGTAGAAGAAATATGAAATGAGAATTTAGAGAAAA  339

seq1  GAGCTAGGTAGGATGGAGAAAGAAAACATCAAAATATGGAAAGCTAGTAA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGGTAGGATGGAGAAAGAAAACATCAAAATATGGAAAGCTAGTAA  389

seq1  AAACAATCAGATCCAAACATTCCATAACATGTCTGACAAAGTTTTCTTGA  436
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAACAATCAGATCCAAACATTCCAAAACATGTCTGACAAAGTTTTCTTGA  439

seq1  GCATAGAACAGAGAATTAAATAATTGCATTCCCATATTTGAGACCTTGAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAACAGAGAATTAAATAATTGCATTCCCATATTTGAGACCTTGAA  489

seq1  TATAAGTTGAATAGCCAGCCATGTTTCTGGAGTAACTTCACTACATTTCC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTTGAATAGCCAGCCATGTTTCTGGAGTAACTTCACTACATTTCC  539

seq1  TCTATAATGTCAGAGATTCTTACTATTTAAAAAGTTATCCATACCATTTG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAATGTCAGAGATTCTTACTATTTAAAAAGTTATCCATACCATTTG  589

seq1  TTTGGTTTCCCAAACTTAAGGTATAAATAATACTTTCCAGCTTTATTAAA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTCCCAAACTTAAGGTATAAATAATACTTTCCAGCTTTATTAAA  639

seq1  ACAAAAAGTAGGCAGGTAGATTTCTGAATTCAAGAACAGCCTGGTCTACA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGTAGGCAGGTAGATTTCTGAATTCAAGAACAGCCTGGTCTACA  689

seq1  TAGGAAATTCCAGGACACCCAGAGCTATACAGAGAAACCATGTCTTGGAA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATTCCAGGACACCCAGAGCTATACAGAGAAACCATGTCTTGGAA  739

seq1  AAATGAAAATAGAAATAAAAAATAAGTAAACATTAGTAATTCTCAGTAAT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAATAGAAATAAAAAATAAGTAAACATTAGTAATTCTCAGTAAT  789

seq1  GCTGCTGATTACCTACACAACAATATCCTTTCTTTTCTTTCATTTTTCCT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGATTACCTACACAACAATATCCTTTCTTTTCTTTCATTTTTCCT  839

seq1  CCTAGAACTCTAACTTTTTCAGGTGTTTTTTTTCTAACTTCTACACTAGG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAACTCTAACTTTTTCAGGTGTTTTTTTTCTAACTTCTACACTAGG  889

seq1  GAAACCCTACATCGATTAGACTAATCTAGTCTTAGGTCCATCATTGCCCA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTACATCGATTAGACTAATCTAGTCTTAGGTCCATCATTGCCCA  939

seq1  GCAAATGTGATAGGTGCTGGTCTGGCCCATGGCCAAAGCTGGCCCAATAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGTGATAGGTGCTGGTCTGGCCCATGGCCAAAGCTGGCCCAATAA  989

seq1  GATCAATGGAGAAGCCTATGTTAGATTTTTCTTACTCCCTCTGCATATGG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATGGAGAAGCCTATGTTAGATTTTTCTTACTCCCTCTGCATATGG  1039

seq1  ACAGGCTTCTTGTTGCTGAGAGCCATCGTGTCTAAATAATCTTGTCTGAA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTTCTTGTTGCTGAGAGCCATCGTGTCTAAATAATCTTGTCTGAA  1089

seq1  TTTGTCTTAGAATAAAGAATGACAGAATAGAAATACATGAACCCCCTGAA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTAGAATAAAGAATGACAGAATAGAAATACATGAACCCCCTGAA  1139

seq1  TCCTTCATGAGTCTATAAAGATGGCGTTCATTATATCTGAAACATATTCC  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCATGAGTCTATAAAGATGGCGTTCATTATATCTGAAACATATTCC  1189

seq1  CTTAAATGCAAGAAATGGAGAAAACTATTGGTCTCTAGTGTGTAAGGTCA  1236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATGCAAGAAATGGAGAAAACTATTGGTCTCTAGTGTGTAAGGTCA  1239

seq1  CTTCAGTTAGAATTC  1251
      |||||||||||||||
seq2  CTTCAGTTAGAATTC  1254