BAC Information

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BAC

Clone NameB6Ng01-114F02
Chromosome16 (Build37)8 (Build37)
Map Location 32,933,021 - 32,934,13923,065,574 - 23,065,679
singlet/doubletsingletsinglet
Overlap geneLrch3
Upstream genePigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, EG625660
Downstream geneIqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4, Zfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114F02.bB6Ng01-114F02.g
ACCDH919867DH919868
length1,099965
definitionDH919867|Mus musculus domesticus DNA, BAC clone: B6Ng01-114F02, 5' end.DH919868|Mus musculus domesticus DNA, BAC clone: B6Ng01-114F02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,933,021 - 32,934,139)(23,065,574 - 23,065,679)
sequence
gaattcagttcaaaggctaaagaagctggagtctgatgtcccctctcaaa
gcaatggcggcagcagaagtttgtacccactcaagaaaaattgaactggc
ctaccaaagtgacttcctctgtcttatatgttcttcccaagctcccatgc
cattggacaaggcatttgaccttagttggtctcttcctataatttgctgt
ctcgagtgcaaatagcctgacagataacactttgatgttagcaggttttc
tagttatctctcaatctggtcaagctgaccatcacagtatcttattggat
agtatcccttacacagtccctggttttgtctagcattatggaggtacata
gttggtttttggcatcatcatgttcattactattgaaactgggtctcatg
tagtttagattaacctcaaactcttgattctcatacctctgtctcttggg
tattggagcttcatgcacgcatcaccattccctatacttattgatagttt
ttaagcagggtctcattgtgtgtcccatactggcatgacacttgccgtgt
agcccagactgacctggaactcatgattttcctgtcttgctttcccagtg
ctggaattacaaagcttaaactacagctttgactatatatttgaaaaatc
atgtatagaatagtgatttgtatacaagaattagaatatttttgttttga
ctttgagttcaaagagtttaagttcgactttcagtaacattaacctcaag
tagccttctcctctgtgcagcgtctgcttgataaagaggttttatacttg
gagattacagccttacggaatagagtaacaaagatgccattattttatgt
gcttggtactttcttctttctttcagtttgtgtttttgaaatagagtctg
gtggggtgtcctgaaccccactgtggaatccaggtggacctcaacttgta
gccatcctctgcctctgctcctaccttcttctttttatattgctagaatc
caggtctagtattgctaggcacctgtccttctactgagctattgctgcta
gtgtattgtctcccggagtgcctttgtgaggattttctttccttctttt
gaattccagagtaggtgacctctatgttagtttgttggttccatctgtac
agatgtgatggtttgtatatgcttgggccagagagtggcgctattaggag
gtgtggccttgttggagtaggtgtgtcacagtgggcgtgggctataatac
cctagtcctaactgcctggaagccagtattcagctagtagcctacagatg
aaaatatagaactctcagctgcttctgcacaatgcctgcctggatgctgc
catgttcctgccatgatgataatggactgaaccactgaacctgtaagcca
gcctcaattaaatgttgttctttacaagacttgcctaggtcatggtgtct
gttcacagcagtaaaaccctaactaagacaactgacattccattactagg
gtattggaactagacacttactggggaggtctggaaactgttgctgagga
agtagctgatgaagtctggaaactgctgctgacccattgtccttgcctca
gaccaggtggtggggcagcttctgagggcacttgtccgtttcttggcaac
agagatttaggtctagtctcctgaactgccaatttgaagcctgtcttgga
atcagcctagccttctcacctttgtatttatgatagctttaaagcactac
agctgggcagatatcaatcctctaagccatgttgtctacttctctggcag
taacccccagatatcacttggcatgttccatcagcctgtcccacaagctg
tcattcatggccacatgctcaccatctgcctatcccagggcaagtcctcc
cttgctcctcctctctgcccttcccctcatggtcccagcctcagacatca
agcctgggaactgaagccccacctacctctccctctcttctgcccagcta
caggctgtaggcatctttactaagcaatcatggataacttgggggggggg
caaggttatacaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_32933021_32934139
seq2: B6Ng01-114F02.b_45_1143

seq1  GAATTCAGTTCAAAGGCTAAAGAAGCTGGAGTCTGATGTCCCCTCTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCAAAGGCTAAAGAAGCTGGAGTCTGATGTCCCCTCTCAAA  50

seq1  GCAATGGCGGCAGCAGAAGTTTGTACCCACTCAAGAAAAATTGAACTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGCGGCAGCAGAAGTTTGTACCCACTCAAGAAAAATTGAACTGGC  100

seq1  CTACCAAAGTGACTTCCTCTGTCTTATATGTTCTTCCCAAGCTCCCATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAAGTGACTTCCTCTGTCTTATATGTTCTTCCCAAGCTCCCATGC  150

seq1  CATTGGACAAGGCATTTGACCTTAGTTGGTCTCTTCCTATAATTTGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGACAAGGCATTTGACCTTAGTTGGTCTCTTCCTATAATTTGCTGT  200

seq1  CTCGAGTGCAAATAGCCTGACAGATAACACTTTGATGTTAGCAGGTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGTGCAAATAGCCTGACAGATAACACTTTGATGTTAGCAGGTTTTC  250

seq1  TAGTTATCTCTCAATCTGGTCAAGCTGACCATCACAGTATCTTATTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATCTCTCAATCTGGTCAAGCTGACCATCACAGTATCTTATTGGAT  300

seq1  AGTATCCCTTACACAGTCCCTGGTTTTGTCTAGCATTATGGAGGTACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCCTTACACAGTCCCTGGTTTTGTCTAGCATTATGGAGGTACATA  350

seq1  GTTGGTTTTTGGCATCATCATGTTCATTACTATTGAAACTGGGTCTCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTTTTGGCATCATCATGTTCATTACTATTGAAACTGGGTCTCATG  400

seq1  TAGTTTAGATTAACCTCAAACTCTTGATTCTCATACCTCTGTCTCTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAGATTAACCTCAAACTCTTGATTCTCATACCTCTGTCTCTTGGG  450

seq1  TATTGGAGCTTCATGCACGCATCACCATTCCCTATACTTATTGATAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAGCTTCATGCACGCATCACCATTCCCTATACTTATTGATAGTTT  500

seq1  TTAAGCAGGGTCTCATTGTGTGTCCCATACTGGCATGACACTTGCCGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAGGGTCTCATTGTGTGTCCCATACTGGCATGACACTTGCCGTGT  550

seq1  AGCCCAGACTGACCTGGAACTCATGATTTTCCTGTCTTGCTTTCCCAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGACTGACCTGGAACTCATGATTTTCCTGTCTTGCTTTCCCAGTG  600

seq1  CTGGAATTACAAAGCTTAAACTACAGCTTTGACTATATATTTGAAAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTACAAAGCTTAAACTACAGCTTTGACTATATATTTGAAAAATC  650

seq1  ATGTATAGAATAGTGATTTGTATACAAGAATTAGAATATTTTTGTTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAGAATAGTGATTTGTATACAAGAATTAGAATATTTTTGTTTTGA  700

seq1  CTTTGAGTTCAAAGAGTTTAAGTTCGACTTTCAGTAACATTAACCTCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGTTCAAAGAGTTTAAGTTCGACTTTCAGTAACATTAACCTCAAG  750

seq1  TAGCCTTCTCCTCTGTGCAGCGTCTGCTTGATAAAGAGGTTTTATACTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTCTCCTCTGTGCAGCGTCTGCTTGATAAAGAGGTTTTATACTTG  800

seq1  GAGATTACAGCCTTACGGAATAGAGTAACAAAGATGCCATTATTTTTATG  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAGATTACAGCCTTACGGAATAGAGTAACAAAGATGCCATTA-TTTTATG  849

seq1  TGCTTGGTACTTTCTTCTTTCTTTCAGTTTGTGTTTTTTGAAATAGAGTC  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGCTTGGTACTTTCTTCTTTCTTTCAGTTTGTG-TTTTTGAAATAGAGTC  898

seq1  TGGT-GTGTGTCCTGAAACTCACTGTGGAATCCAGGTGGACCTCAAACTT  949
      |||| | |||||||||| | |||||||||||||||||||||||| |||||
seq2  TGGTGGGGTGTCCTGAACCCCACTGTGGAATCCAGGTGGACCTC-AACTT  947

seq1  GTAGCCATCCTCCTGCCTCTGCCTCCTACCTTTTCTTTCTTTTTATATTG  999
      ||||||||||| ||||||||| ||||||||||    ||||||||||||||
seq2  GTAGCCATCCT-CTGCCTCTG-CTCCTACCTT---CTTCTTTTTATATTG  992

seq1  CTAGAATCCAAGTTCTAGTATATGCTAGGCACTTGTTCTTCTACTGAGCT  1049
      ||||||||| || |||||||| |||||||||| ||| |||||||||||||
seq2  CTAGAATCC-AGGTCTAGTAT-TGCTAGGCACCTGTCCTTCTACTGAGCT  1040

seq1  ATTGCTGCTAAGTGGTATTGTTCTCCCAGAGTGCTTTGTTGAAGGTATTT  1099
      ||||||||| ||| |||||| |||||| |||||| ||  ||| |     |
seq2  ATTGCTGCT-AGT-GTATTG-TCTCCCGGAGTGCCTTTGTGAGG----AT  1083

seq1  TTTCTTTTTCTCTTTCTTTT  1119
      ||||||    || |||||||
seq2  TTTCTT----TCCTTCTTTT  1099

seq1: chr8_23065574_23065679
seq2: B6Ng01-114F02.g_122_448 (reverse)

seq1  TGTCTTAGTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTCTTAGTTAGGGTTTTACTGCTGTGAACAGACACCATGACCTAGGCAA  50

seq1  CTCTTAT-AAGGACAACATTTAATTGGGGCTGGGCCA-AGCAT-----AT  93
       |||| | ||| |||||||||||||| ||||||   | ||  |      |
seq2  GTCTTGTAAAGAACAACATTTAATTGAGGCTGGCTTACAGGTTCAGTGGT  100

seq1  ACAAACCATCA-CA------------------------------------  106
       ||  |||| | ||                                    
seq2  TCAGTCCATTATCATCATGGCAGGAACATGGCAGCATCCAGGCAGGCATT  150

seq1  --------------------------------------------------  106
                                                        
seq2  GTGCAGAAGCAGCTGAGAGTTCTATATTTTCATCTGTAGGCTACTAGCTG  200

seq1  --------------------------------------------------  106
                                                        
seq2  AATACTGGCTTCCAGGCAGTTAGGACTAGGGTATTATAGCCCACGCCCAC  250

seq1  --------------------------------------------------  106
                                                        
seq2  TGTGACACACCTACTCCAACAAGGCCACACCTCCTAATAGCGCCACTCTC  300

seq1  ---------------------------  106
                                 
seq2  TGGCCCAAGCATATACAAACCATCACA  327