BAC Information

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BAC

Clone NameB6Ng01-114H07
Chromosome16 (Build37)
Map Location 90,063,311 - 90,180,255
singlet/doubletdoublet
Overlap geneLOC100040496, LOC640694, LOC100040440
Upstream gene1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1
Downstream geneSod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114H07.bB6Ng01-114H07.g
ACCDH919971DH919972
length1,175905
definitionDH919971|Mus musculus domesticus DNA, BAC clone: B6Ng01-114H07, 5' end.DH919972|Mus musculus domesticus DNA, BAC clone: B6Ng01-114H07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,063,311 - 90,063,882)(90,179,351 - 90,180,255)
sequence
gaattcttcacctgcttcagagctactaagagctggctccccgagcccat
ccagcgatgagcacaggctccttttcctagagacctccgctaattgatct
ttcttcttttccctttttcctctttttcttctaatctctctccaggtatt
cctacctaaccttaacttttcctcgggttcaagacccttggaaaggcctg
tatacttattttgtgtaccatattttctctttgttcctactctctctccc
cgctttacttctgatagcttgtcctgaatttcatctagaatccgccctat
cttaaccacttgataacatgtgaaaaggaacaaaagggctcctaacacca
gaaaaaattcaaggccaaacatattccactttacttctgatagactgtct
tgaatttcgttagaaagttcaagaccaggcttacctcgtaaagctgtact
cactggtactctcgttccccagctgaaaagttctgaattcatacagttga
atccttcttaacagtctgctttacgggaacctttatcaccgtcgttcccc
agctgatgagttctgaattcggcagttgaatccttctcaacagtctgtgt
tacgggaacctttataaacgtgatccgcagttctggttctgaaatgaagt
atccctcctgcgccggtgatggttaactccctcccgggtttttcttcccg
gtctttcggcaccaattgttattagacgcgttctcacgaccggccaggaa
gaacaccacagaccagaatcttctgcggcaaagctttattcttacatctt
caggaacagagtgcaagaagcaagagagcaagaagcaagagagcaagaag
cagagagagagaaaagcagagagagagaaacgaaaccccgtccctcttaa
ggagcattctccttcgcctcggacgtgtcactccctgattggctgcagcc
catcggcgagttgacgtcacggggaaggcagagcacaagtagtcataaga
tacccttggcacatgcgcagattatttgttaaccacttagaaacacagct
gtcagcgcatcttgtaacgcgaatggtgggcgcggcttccaacagagacc
taaccaccaggaggatgacaaggagcatcacctcacgcctctccgaagag
tgtggcgtgatacggtgacgaaagg
gaattcaacctgtgttgccacatttgcccattcccttgtctgactttcct
ttcaccaaaccctcacagagcttcaggttcaggccctaatgtaggagggt
tactattttactctaagcaacatatgcggagtggagagattgctaaggtc
aggtctggaaaatccctctgcctccataggcaaataaaactgtcagattt
agccgggcagtggtggcgaacacctttaatcccagcacttgggaggcaga
ggcaggtggatttctgagttcaaggccagcctggtctacagagtgggttc
caggacagccagggatatacagagaaaccctgctcgaaaaaccaaaaaaa
aaaaagtcagatttgagaaggttcagtaacttcatggctcggccacctct
gtctgagcctgcgtccctggactcgaagctcctctgtctgagcctgagcc
cccagactcagctcctctgtcccacgggctgcttcttgacactaagcccc
tgatgcttttttccgacacacttctcccgtggagctgctctctgttgtct
gacttttgtggatacctttgatgcttctaactcttcgcttctaactcttg
ctctaccctctaagccgttcgctctcatcccgtacatctgctgaggaaca
gtggacagactccacacctccctgttctcttcaggcttccagatcactgc
tatgacagaatgaggggactcagggtgtaaaatggaggcactgttttttg
tttttgttttttccctagccttttctctccaactccctaagacccacaag
aaaaaaagtgaggagagaaaaaacattagtgaaataacacttcagctcat
aatagttatatcaaaagcatcagtcccatggcaggagggttgtgggggtt
ggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_90063311_90063882
seq2: B6Ng01-114H07.b_659_1216

seq1  ACGTGATCCGCAGTTCTGGTTCTGAAATGAAGTATCCCTCCTGCGCCGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGATCCGCAGTTCTGGTTCTGAAATGAAGTATCCCTCCTGCGCCGGT  50

seq1  GATGGTTAACTCCCTCCCGGGTTTTTCTTCCCGGTCTTTCGGCACCAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTAACTCCCTCCCGGGTTTTTCTTCCCGGTCTTTCGGCACCAATT  100

seq1  GTTATTAGACGCGTTCTCACGACCGGCCAGGAAGAACACCACAGACCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAGACGCGTTCTCACGACCGGCCAGGAAGAACACCACAGACCAGA  150

seq1  ATCTTCTGCGGCAAAGCTTTATTCTTACATCTTCAGGAACAGAGTGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGCGGCAAAGCTTTATTCTTACATCTTCAGGAACAGAGTGCAAG  200

seq1  AAGCAAGAGAGCAAGAAGCAAGAGAGCAAGAAGCAAGAGAGAGAGAAAAG  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGCAAGAGAGCAAGAAGCAAGAGAGCAAGAAGC-AGAGAGAGAGAAAAG  249

seq1  CAAGAGAGAGAGAAAACGAAACCCCGTCCCTCTTAAGGAGCATTCTCCTT  300
      | |||||||||| |||||||||||||||||||||||||||||||||||||
seq2  C-AGAGAGAGAG-AAACGAAACCCCGTCCCTCTTAAGGAGCATTCTCCTT  297

seq1  CGCCTCGGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGTTG  350
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CGCCTCGGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGG-CGAGTTG  346

seq1  ACGTCACGGGGAAGGCAGAGCACAAGTAGTCATAAGATACCCTTGGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCACGGGGAAGGCAGAGCACAAGTAGTCATAAGATACCCTTGGCACA  396

seq1  TGCGCAGATTATTTGTTTACCACTTAG-AACACAGCTGTCAGCGCCATCT  449
      ||||||||||||||||| ||||||||| |||||||||||||||| |||||
seq2  TGCGCAGATTATTTGTTAACCACTTAGAAACACAGCTGTCAGCG-CATCT  445

seq1  TGTAACGGCGAAT-GTGGGCGCGGCTCCCAACAGAGACACTAAACCACCA  498
      |||||| |||||| |||||||||||| ||||||||||| || ||||||||
seq2  TGTAAC-GCGAATGGTGGGCGCGGCTTCCAACAGAGAC-CT-AACCACCA  492

seq1  AGAGGATGACAAGGAGCA-CACACTCAACCGCCTCTCCCAGAAGAAGTGT  547
       ||||||||||||||||| ||| ||||  |||||||||  |||| |||||
seq2  GGAGGATGACAAGGAGCATCAC-CTCA--CGCCTCTCC--GAAG-AGTGT  536

seq1  -GCGTGGATTAACGGTGACAGAAAGG  572
       |||| |||  |||||||| ||||||
seq2  GGCGT-GAT--ACGGTGAC-GAAAGG  558

seq1: chr16_90179351_90180255
seq2: B6Ng01-114H07.g_67_971 (reverse)

seq1  CTGCCAACCCCCACACCCTCCCTGCCATGGGACTGATGCTTTTGATATAA  50
      ||||||||||||||| ||  ||||||||||||||||||||||||||||||
seq2  CTGCCAACCCCCACAACCCTCCTGCCATGGGACTGATGCTTTTGATATAA  50

seq1  CTATTATGAGCTGAAGTGTTATTTCACTAATGTTTTTTCTCTCCTCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATGAGCTGAAGTGTTATTTCACTAATGTTTTTTCTCTCCTCACTT  100

seq1  TTTTTCTTGTGGGTCTTAGGGAGTTGGAGAGAAAAGGCTAGGGAAAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTGTGGGTCTTAGGGAGTTGGAGAGAAAAGGCTAGGGAAAAAAC  150

seq1  AAAAACAAAAAACAGTGCCTCCATTTTACACCCTGAGTCCCCTCATTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAAACAGTGCCTCCATTTTACACCCTGAGTCCCCTCATTCTG  200

seq1  TCATAGCAGTGATCTGGAAGCCTGAAGAGAACAGGGAGGTGTGGAGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCAGTGATCTGGAAGCCTGAAGAGAACAGGGAGGTGTGGAGTCTG  250

seq1  TCCACTGTTCCTCAGCAGATGTACGGGATGAGAGCGAACGGCTTAGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGTTCCTCAGCAGATGTACGGGATGAGAGCGAACGGCTTAGAGGG  300

seq1  TAGAGCAAGAGTTAGAAGCGAAGAGTTAGAAGCATCAAAGGTATCCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAAGAGTTAGAAGCGAAGAGTTAGAAGCATCAAAGGTATCCACAA  350

seq1  AAGTCAGACAACAGAGAGCAGCTCCACGGGAGAAGTGTGTCGGAAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGACAACAGAGAGCAGCTCCACGGGAGAAGTGTGTCGGAAAAAAG  400

seq1  CATCAGGGGCTTAGTGTCAAGAAGCAGCCCGTGGGACAGAGGAGCTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGGGCTTAGTGTCAAGAAGCAGCCCGTGGGACAGAGGAGCTGAGT  450

seq1  CTGGGGGCTCAGGCTCAGACAGAGGAGCTTCGAGTCCAGGGACGCAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGCTCAGGCTCAGACAGAGGAGCTTCGAGTCCAGGGACGCAGGCT  500

seq1  CAGACAGAGGTGGCCGAGCCATGAAGTTACTGAACCTTCTCAAATCTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGAGGTGGCCGAGCCATGAAGTTACTGAACCTTCTCAAATCTGAC  550

seq1  TTTTTTTTTTTTGGTTTTTCGAGCAGGGTTTCTCTGTATATCCCTGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTGGTTTTTCGAGCAGGGTTTCTCTGTATATCCCTGGCTG  600

seq1  TCCTGGAACCCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACCCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCAC  650

seq1  CTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTTCGCCACCACTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTTCGCCACCACTGCC  700

seq1  CGGCTAAATCTGACAGTTTTATTTGCCTATGGAGGCAGAGGGATTTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTAAATCTGACAGTTTTATTTGCCTATGGAGGCAGAGGGATTTTCCA  750

seq1  GACCTGACCTTAGCAATCTCTCCACTCCGCATATGTTGCTTAGAGTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGACCTTAGCAATCTCTCCACTCCGCATATGTTGCTTAGAGTAAAA  800

seq1  TAGTAACCCTCCTACATTAGGGCCTGAACCTGAAGCTCTGTGAGGGTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACCCTCCTACATTAGGGCCTGAACCTGAAGCTCTGTGAGGGTTTG  850

seq1  GTGAAAGGAAAGTCAGACAAGGGAATGGGCAAATGTGGCAACACAGGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGGAAAGTCAGACAAGGGAATGGGCAAATGTGGCAACACAGGTTG  900

seq1  AATTC  905
      |||||
seq2  AATTC  905