BAC Information

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BAC

Clone NameB6Ng01-114H20
Chromosome16 (Build37)
Map Location 20,330,955 - 20,442,543
singlet/doubletdoublet
Overlap geneAbcc5
Upstream geneOlfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044
Downstream geneEif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915, 2310042E22Rik, Ephb3, 6430590I03Rik, Vps8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114H20.bB6Ng01-114H20.g
ACCDH919997DH919998
length1,0391,125
definitionDH919997|Mus musculus domesticus DNA, BAC clone: B6Ng01-114H20, 5' end.DH919998|Mus musculus domesticus DNA, BAC clone: B6Ng01-114H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,330,955 - 20,331,991)(20,441,423 - 20,442,543)
sequence
gaattcaatacaatataaaagatttaggatgagtaaatacccttctgaaa
agacactaacacttgttgggttaacctgagtgaagcagatgaaaagacag
tgatagtctctgcaagccttcaatagtaacttgatttaagtatacacacc
actccccaccttggctcactcactcttcatgctctctaacctcttacagc
agcgtgggtacctcatctggtaggtaagtggaggagtgcaggctgtggga
actaagacccatcacacagaattgggtatccggggccccttggcctttgc
aaacaacccttttgcagatgagatttcatcatcagatattaggatccagg
gctccagtactacaaagacattcagaagtacctcacaccctccccagaca
actgttttatacaacaagagctttacaaatccaaaataattttattcact
ttttcatatttttgcttttataaggtatttagcaaacatgctaaggcgac
agaatgtctagttggtcacgacatgcgacgctgaccactcgactggtgac
agtggcaaccacacccacccaagctacgagccccagagcacaagggggtc
tgcaagagcgcaccaaaccacacagcaatcagcaacctgaggtaggtctc
tttacagtacaaaaaacttctacaccagtgtgagacactgattagcaaga
gctgctgaggggtgggtgcagactttgcagaggagactaaagtgaggaag
aacggaccccaccatcctgagccctgttgctgagctctggagccttgggg
tcaggcaaatgaaaatgccacctacaacagcagcagtggaccctgggggc
tgggaaccagctggccagggaactcgacaactctgtggcgaccagcctca
ggaacctgaagcatggaacactgggagcagactggatcttgcttagaaat
ggcagcagaagaaggaaggcagaagaagctctccctctgaggaatgcaga
ggttctcattcctgagagggaatggggggttggggtggg
gaattcactctgtaaaccaggctggccttgaactcagagatttgcctctt
tttttccccaagtgctgggattaaaggtgtgtgtcaccatacccatcttt
accctctacattaattacttttctactgctgtagcaaaacactatggcca
aggaaacttataaaaaagtatttgacttggggcttaaagctttagaggat
tagagcctgtgaaggcagagcaaaggcacggcagcaagacagctgagagc
tcacatctgatcagcaagcaggaggtagagatgggctctgtggaagtctt
ttgaaacccaaaagcccatccctagtgacacatgtcctaaacagttccac
caactgagtattcaaatgtattagcctgtgggaaccactcatgtacacca
ccactccctctaagtcatctcacccagcctctaaactctgctcttttcta
aaaaaaaaaaaaaaaaaaatcaaatcttagaccctaataactacatggtg
ttctctctctctctctttctatctttctttcttgatttatttatttaatt
tatttatatgagtacactgtagctatcttcagacacaccagaagagggca
tcagatcccattacaaatagttgtgagccattatgtggttgctgggaatt
gaactcaggacctctagaaaagcagtaagtgctcttaacagcagaattat
ctctccagcacatgatttctttcttgattctttcagtcctaatatagctt
cttgatgaggagatcctgaattcataggttcttggatgtcatactgacgt
agcccacattcatctgggctccaccttacaaatggattgtatgagatcta
gagaaaccatgacatgagagaaaacatgatgttgggatctccttttcctc
atccctgcagttttatactcctgcccctccaaccccatccctcacctcag
ccatcacttcattattgaaatgtcacttacaaaaccttctactcttccct
gtgctctcagagatcttgaactttgtgtctagtttgacattttgctgctt
gtgacaatactattgactaagcacttgcttgtatttgcttacactttcag
ggtcataacacatcactggggagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_20330955_20331991
seq2: B6Ng01-114H20.b_46_1084

seq1  GAATTCAATACAATATAAAAGATTTAGGATGAGTAAATACCCTTCTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATACAATATAAAAGATTTAGGATGAGTAAATACCCTTCTGAAA  50

seq1  AGACACTAACACTTGTTGGGTTAACCTGAGTGAAGCAGATGAAAAGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTAACACTTGTTGGGTTAACCTGAGTGAAGCAGATGAAAAGACAG  100

seq1  TGATAGTCTCTGCAAGCCTTCAATAGTAACTTGATTTAAGTATACACACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTCTCTGCAAGCCTTCAATAGTAACTTGATTTAAGTATACACACC  150

seq1  ACTCCCCACCTTGGCTCACTCACTCTTCATGCTCTCTAACCTCTTACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCACCTTGGCTCACTCACTCTTCATGCTCTCTAACCTCTTACAGC  200

seq1  AGCGTGGGTACCTCATCTGGTAGGTAAGTGGAGGAGTGCAGGCTGTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGGGTACCTCATCTGGTAGGTAAGTGGAGGAGTGCAGGCTGTGGGA  250

seq1  ACTAAGACCCATCACACAGAATTGGGTATCCGGGGCCCCTTGGCCTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGACCCATCACACAGAATTGGGTATCCGGGGCCCCTTGGCCTTTGC  300

seq1  AAACAACCCTTTTGCAGATGAGATTTCATCATCAGATATTAGGATCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCCTTTTGCAGATGAGATTTCATCATCAGATATTAGGATCCAGG  350

seq1  GCTCCAGTACTACAAAGACATTCAGAAGTACCTCACACCCTCCCCAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGTACTACAAAGACATTCAGAAGTACCTCACACCCTCCCCAGACA  400

seq1  ACTGTTTTATACAACAAGAGCTTTACAAATCCAAAATAATTTTATTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTATACAACAAGAGCTTTACAAATCCAAAATAATTTTATTCACT  450

seq1  TTTTCATATTTTTGCTTTTATAAGGTATTTAGCAAACATGCTAAGGCGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATATTTTTGCTTTTATAAGGTATTTAGCAAACATGCTAAGGCGAC  500

seq1  AGAATGTCTAGTTGGTCACGACATGCGACGCTGACCACTCGACTGGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTCTAGTTGGTCACGACATGCGACGCTGACCACTCGACTGGTGAC  550

seq1  AGTGGCAACCACACCCACCCAAGCTACGAGCCCCAGAGCACAAGGGGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAACCACACCCACCCAAGCTACGAGCCCCAGAGCACAAGGGGGTC  600

seq1  TGCAAGAGCGCACCAAACCACACAGCAATCAGCAACCTGAGGTAGGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAGCGCACCAAACCACACAGCAATCAGCAACCTGAGGTAGGTCTC  650

seq1  TTTACAGTACAAAAAACTTCTACACCAGTGTGAGACACTGATTAGCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTACAAAAAACTTCTACACCAGTGTGAGACACTGATTAGCAAGA  700

seq1  GCTGCTGAGGGGTGGGTGCAGACTTTGCAGAGGAGACTAAAGTGAGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGAGGGGTGGGTGCAGACTTTGCAGAGGAGACTAAAGTGAGGAAG  750

seq1  AACGGACCCCACCATCCTGAGCCCTGTTGCTGAGCTCTGGAGCCTTGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGACCCCACCATCCTGAGCCCTGTTGCTGAGCTCTGGAGCCTTGGGG  800

seq1  TCAGGCAAATGAAAATGCCACCTACAACAGCAGCAGTGGACCCT-GGGGC  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCAGGCAAATGAAAATGCCACCTACAACAGCAGCAGTGGACCCTGGGGGC  850

seq1  TGGGAACCAGCTGGCCAGGGAACTCGACAACTCTGTGGCGACCAGCCTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACCAGCTGGCCAGGGAACTCGACAACTCTGTGGCGACCAGCCTCA  900

seq1  GGAACCTGAAGCATGGAACACTGGGAGCAGACTGGATCTTGCTTAGAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTGAAGCATGGAACACTGGGAGCAGACTGGATCTTGCTTAGAAAT  950

seq1  GGCAGCAGAAGAAGGAAGGCAGAAAGAAGCTCTCCCTCTGAGGAATGCAG  999
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGCAGCAGAAGAAGGAAGGCAG-AAGAAGCTCTCCCTCTGAGGAATGCAG  999

seq1  AGGTTCTCATTCCTGAGAGGGAATGGGGG--TGGGGTGGG  1037
      |||||||||||||||||||||||||||||  |||||||||
seq2  AGGTTCTCATTCCTGAGAGGGAATGGGGGGTTGGGGTGGG  1039

seq1: chr16_20441423_20442543
seq2: B6Ng01-114H20.g_67_1191 (reverse)

seq1  GTCT-CCCAGTGATGTGTTATGA-CCTGGAAGTGTAAGCCAAATACAGCC  48
      |||| |||||||||||||||||| |||| ||||||||| ||||||||  |
seq2  GTCTCCCCAGTGATGTGTTATGACCCTGAAAGTGTAAG-CAAATACAAGC  49

seq1  AAGTTGCTTTGGTCATAGTATTTGTCAC-AGCAGC-AGATGTCAAACTAG  96
      ||| ||||| |   |||||| ||||||| |||||| | ||||||||||||
seq2  AAG-TGCTTAGTCAATAGTA-TTGTCACAAGCAGCAAAATGTCAAACTAG  97

seq1  AACAC-AAGTTCAAGGTCTCCTGAGAGCACAGGGAAGAGTAG-AGGTTTT  144
       |||| ||||||||| ||| |||||||||||||||||||||| |||||||
seq2  -ACACAAAGTTCAAGATCT-CTGAGAGCACAGGGAAGAGTAGAAGGTTTT  145

seq1  GTAAGTGACATTTCAATAATGAAGTGATGGCCTGAGGTGAGGGATGGGGG  194
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  GTAAGTGACATTTCAATAATGAAGTGATGG-CTGAGGTGAGGGAT-GGGG  193

seq1  TTGGA-GGGCAGG-GTATAAAACTGCAGGGATGAGGAAAAGGAGAT-CCA  241
      ||||| ||||||| |||||||||||||||||||||||||||||||| |||
seq2  TTGGAGGGGCAGGAGTATAAAACTGCAGGGATGAGGAAAAGGAGATCCCA  243

seq1  ACATCATG-TTTCTCTCATGTCATGGTTTCTCTAGATCTCATACAATCCA  290
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATGTTTTCTCTCATGTCATGGTTTCTCTAGATCTCATACAATCCA  293

seq1  TTTGTAAGGTGGAGCCCAGATGAATGT-GGCTACGTCAGTATGACATCCA  339
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTGTAAGGTGGAGCCCAGATGAATGTGGGCTACGTCAGTATGACATCCA  343

seq1  AGAACCTATGAATTCAGGATCTCCTCATCAAGAAGCTATATTAGGACTGA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTATGAATTCAGGATCTCCTCATCAAGAAGCTATATTAGGACTGA  393

seq1  AAGAATCAAGAAAGAAATCATGTGCTGGAGAGATAATTCTGCTGTTAAGA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCAAGAAAGAAATCATGTGCTGGAGAGATAATTCTGCTGTTAAGA  443

seq1  GCACTTACTGCTTTTCTAGAGGTCCTGAGTTCAATTCCCAGCAACCACAT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTACTGCTTTTCTAGAGGTCCTGAGTTCAATTCCCAGCAACCACAT  493

seq1  AATGGCTCACAACTATTTGTAATGGGATCTGATGCCCTCTTCTGGTGTGT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTCACAACTATTTGTAATGGGATCTGATGCCCTCTTCTGGTGTGT  543

seq1  CTGAAGATAGCTACAGTGTACTCATATAAATAAATTAAATAAATAAATCA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGATAGCTACAGTGTACTCATATAAATAAATTAAATAAATAAATCA  593

seq1  AGAAAGAAAGATAGAAAGAGAGAGAGAGAGAACACCATGTAGTTATTAGG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGATAGAAAGAGAGAGAGAGAGAACACCATGTAGTTATTAGG  643

seq1  GTCTAAGATTTGATTTTTTTTTTTTTTTTTTTTAGAAAAGAGCAGAGTTT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGATTTGATTTTTTTTTTTTTTTTTTTTAGAAAAGAGCAGAGTTT  693

seq1  AGAGGCTGGGTGAGATGACTTAGAGGGAGTGGTGGTGTACATGAGTGGTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTGGGTGAGATGACTTAGAGGGAGTGGTGGTGTACATGAGTGGTT  743

seq1  CCCACAGGCTAATACATTTGAATACTCAGTTGGTGGAACTGTTTAGGACA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGGCTAATACATTTGAATACTCAGTTGGTGGAACTGTTTAGGACA  793

seq1  TGTGTCACTAGGGATGGGCTTTTGGGTTTCAAAAGACTTCCACAGAGCCC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCACTAGGGATGGGCTTTTGGGTTTCAAAAGACTTCCACAGAGCCC  843

seq1  ATCTCTACCTCCTGCTTGCTGATCAGATGTGAGCTCTCAGCTGTCTTGCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTACCTCCTGCTTGCTGATCAGATGTGAGCTCTCAGCTGTCTTGCT  893

seq1  GCCGTGCCTTTGCTCTGCCTTCACAGGCTCTAATCCTCTAAAGCTTTAAG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGCCTTTGCTCTGCCTTCACAGGCTCTAATCCTCTAAAGCTTTAAG  943

seq1  CCCCAAGTCAAATACTTTTTTATAAGTTTCCTTGGCCATAGTGTTTTGCT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGTCAAATACTTTTTTATAAGTTTCCTTGGCCATAGTGTTTTGCT  993

seq1  ACAGCAGTAGAAAAGTAATTAATGTAGAGGGTAAAGATGGGTATGGTGAC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGTAGAAAAGTAATTAATGTAGAGGGTAAAGATGGGTATGGTGAC  1043

seq1  ACACACCTTTAATCCCAGCACTTGGGGAAAAAAAGAGGCAAATCTCTGAG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCTTTAATCCCAGCACTTGGGGAAAAAAAGAGGCAAATCTCTGAG  1093

seq1  TTCAAGGCCAGCCTGGTTTACAGAGTGAATTC  1121
      ||||||||||||||||||||||||||||||||
seq2  TTCAAGGCCAGCCTGGTTTACAGAGTGAATTC  1125