BAC Information

Click to search

BAC

Clone NameB6Ng01-116E12
Chromosome16 (Build37)
Map Location 16,628,137 - 16,728,011
singlet/doubletdoublet
Overlap geneOlfr19, 4933404G15Rik
Upstream geneMcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4
Downstream geneSpag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116E12.bB6Ng01-116E12.g
ACCDH921318DH921319
length1,1731,053
definitionDH921318|Mus musculus domesticus DNA, BAC clone: B6Ng01-116E12, 5' end.DH921319|Mus musculus domesticus DNA, BAC clone: B6Ng01-116E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,726,829 - 16,728,011)(16,628,137 - 16,628,666)
sequence
gaattccaagcccagggtcagctcaaggactacctagggcattggtgaag
gccaggaagcaaagtttgattttgcttaggtatttggccagtcattgctt
ggagacaatacaaaacaaaacaatactgaggaaaagcagacagatccatt
ctcaaggacaagtttggaacatttgtcatatgggatgtcagggttccagg
agactaagtttctgtgaatttttcacctcaggactgcgtccaggtttctg
ggcctgtcacactggtcactactggagtggatgtaacatccaccctgact
cagagctgaccaagccacttcagtgcatcagcagtgcaagttgtctcaca
gcacagcaggggaactcatcttgatgaccagaagggagatttccactcct
aattgtgtgctgtgctggccagctccactgtcctgaaattctcagtttgt
gtgccaggctcctgataactgactaatttgttgagagtttgggcatgctc
aaaataatgtctgtgataagaaagagggcttagaagatgtttagtgaagt
gttcctagattacatctcaggaacacgaagctaagagattaattgactgg
tattactactgaaaccacatgcagaaagaaatattgcccagaatcttagg
agtgttcatatacttacacagtaaaaagttaagaaacaaagtaagtgctt
ttgtgaaattacaaaatggatgtagcagtaactgggacctagacagagga
aggcgaggattaaaactgacagccctggtctgccaggacagacactgctg
taagcagttctctgcatttacaggcttgcaaaaacaatctgacttttctg
ggtcatcaagaaaaattaatttgtgacagggtgttggattctgacactgc
aacatggttggagaaagttcacaaacagtgaacaattgggtagccccttg
ggcatactagaggcatgccatgccagaacttcctctagacaaagttgcct
tgtcaaagagtagctagagatgtacatgccaaagctttgtgctggaacag
cttcagaagcacatgccatggtaggagtacacatatagaaagaccctgat
gaaagaagtgccaatgtttcaatccactttgtgcttgaggtcagaagttc
tttcaaagaaagtgatgagtcag
gaattcatgataaatgatacaaaagttcatatatgcttcgggccttcatg
ttcagccaggaatcggagatgagacccagacctttgcacactttacctaa
cagaggagagtcaacttccagggagggctctgaccctgggaccaggtgag
aacaccatcttgtatcccgggtcactcagagaccagtcctcacaggagag
tgcacggaccacaaaagcaacagagcttcttcaatagggtcccttcgagc
cttcatcttcaggcaggaggcagagctgatacccagacctcagtgcactt
tccccaccagaggagagtcagcctgcagggaaagctctgaccccaggacc
aggtgagaacatcatcttggatcctgggtccctcagagaccagtctgagc
aggagtgcatggactgcagaagcaatatagcttctaggacaggattccgt
caggccttcatcttcagccaggagacagagctgagctccagatctctatg
tactttcccttcaagaggagagcttgcctgcaaagagggctctgaccgcg
gagactcaggagagagttggactcccaggagtgctgatagaggctagaag
aatcacaggaagaacaagctccagtaagagacagctattacaactaatgc
cagagattaccagatggcgaaagacaaatgtaagaatctcactaacagaa
atcaagagcactcagcatcatcagaacccagcactcccaacacagtgaat
cctggataccccaacacacctgaaaagcaagattcagatttaaaatcata
tcacatgatgctggttgaggattttaagaaagacattaataactcactta
aagaaatacaggaaaacactgctaaccagatagacgtctttaaagaggaa
gcacaaaatcccttaaatgaatgacaggaaaacactgataaatagataga
ggtcttaaagaagaaacacaaaatcccttaaagatacatgaaaacacatg
aaatgggtgatggattaaacaaaccatcagatctaaaatggagtacaaca
tga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_16726829_16728011
seq2: B6Ng01-116E12.b_46_1218 (reverse)

seq1  CTGACTCATCACTTCTTTTTGAAAGAAACCTCTGACCTCCAAGCAC-AAG  49
      |||||||||||||| | |||||||| ||| |||||||| ||||||| |||
seq2  CTGACTCATCACTT-TCTTTGAAAG-AACTTCTGACCT-CAAGCACAAAG  47

seq1  TGAATTGAAACATTGGGCCACTTCCTTTTCAATCAGGGTC-TTCTAATTA  98
      || |||||||||||||  ||||||  |||| ||||||||| |||||  ||
seq2  TGGATTGAAACATTGG--CACTTC--TTTC-ATCAGGGTCTTTCTA--TA  90

seq1  TGTGTACTCTAACCATGGCATGTGCTTTCTGAAGCTGTTCCAGCACAAAG  148
      |||||||||  |||||||||||||| ||||||||||||||||||||||||
seq2  TGTGTACTCCTACCATGGCATGTGC-TTCTGAAGCTGTTCCAGCACAAAG  139

seq1  CTTTGGCATGTACATCTCTAGCTACTCTTTGACAAGGCAACTTTGTCTTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTTGGCATGTACATCTCTAGCTACTCTTTGACAAGGCAACTTTGTC-TA  188

seq1  GAGGAAGTTCTGGCATGGCATGCCTCTAGTATGCCCAAGGGGCTACCCAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGTTCTGGCATGGCATGCCTCTAGTATGCCCAAGGGGCTACCCAA  238

seq1  TTGTTCACTGTTTGTGAACTTTCTCCAACCATGTTGCAGTGTCAGAATCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCACTGTTTGTGAACTTTCTCCAACCATGTTGCAGTGTCAGAATCC  288

seq1  AACACCCTGTCACAAATTAATTTTTCTTGATGACCCAGAAAAGTCAGATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCTGTCACAAATTAATTTTTCTTGATGACCCAGAAAAGTCAGATT  338

seq1  GTTTTTGCAAGCCTGTAAATGCAGAGAACTGCTTACAGCAGTGTCTGTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGCAAGCCTGTAAATGCAGAGAACTGCTTACAGCAGTGTCTGTCC  388

seq1  TGGCAGACCAGGGCTGTCAGTTTTAATCCTCGCCTTCCTCTGTCTAGGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGACCAGGGCTGTCAGTTTTAATCCTCGCCTTCCTCTGTCTAGGTC  438

seq1  CCAGTTACTGCTACATCCATTTTGTAATTTCACAAAAGCACTTACTTTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTACTGCTACATCCATTTTGTAATTTCACAAAAGCACTTACTTTGT  488

seq1  TTCTTAACTTTTTACTGTGTAAGTATATGAACACTCCTAAGATTCTGGGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAACTTTTTACTGTGTAAGTATATGAACACTCCTAAGATTCTGGGC  538

seq1  AATATTTCTTTCTGCATGTGGTTTCAGTAGTAATACCAGTCAATTAATCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCTTTCTGCATGTGGTTTCAGTAGTAATACCAGTCAATTAATCT  588

seq1  CTTAGCTTCGTGTTCCTGAGATGTAATCTAGGAACACTTCACTAAACATC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTTCGTGTTCCTGAGATGTAATCTAGGAACACTTCACTAAACATC  638

seq1  TTCTAAGCCCTCTTTCTTATCACAGACATTATTTTGAGCATGCCCAAACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGCCCTCTTTCTTATCACAGACATTATTTTGAGCATGCCCAAACT  688

seq1  CTCAACAAATTAGTCAGTTATCAGGAGCCTGGCACACAAACTGAGAATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAAATTAGTCAGTTATCAGGAGCCTGGCACACAAACTGAGAATTT  738

seq1  CAGGACAGTGGAGCTGGCCAGCACAGCACACAATTAGGAGTGGAAATCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGTGGAGCTGGCCAGCACAGCACACAATTAGGAGTGGAAATCTC  788

seq1  CCTTCTGGTCATCAAGATGAGTTCCCCTGCTGTGCTGTGAGACAACTTGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGGTCATCAAGATGAGTTCCCCTGCTGTGCTGTGAGACAACTTGC  838

seq1  ACTGCTGATGCACTGAAGTGGCTTGGTCAGCTCTGAGTCAGGGTGGATGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGATGCACTGAAGTGGCTTGGTCAGCTCTGAGTCAGGGTGGATGT  888

seq1  TACATCCACTCCAGTAGTGACCAGTGTGACAGGCCCAGAAACCTGGACGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCACTCCAGTAGTGACCAGTGTGACAGGCCCAGAAACCTGGACGC  938

seq1  AGTCCTGAGGTGAAAAATTCACAGAAACTTAGTCTCCTGGAACCCTGACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGAGGTGAAAAATTCACAGAAACTTAGTCTCCTGGAACCCTGACA  988

seq1  TCCCATATGACAAATGTTCCAAACTTGTCCTTGAGAATGGATCTGTCTGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATATGACAAATGTTCCAAACTTGTCCTTGAGAATGGATCTGTCTGC  1038

seq1  TTTTCCTCAGTATTGTTTTGTTTTGTATTGTCTCCAAGCAATGACTGGCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCAGTATTGTTTTGTTTTGTATTGTCTCCAAGCAATGACTGGCC  1088

seq1  AAATACCTAAGCAAAATCAAACTTTGCTTCCTGGCCTTCACCAATGCCCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTAAGCAAAATCAAACTTTGCTTCCTGGCCTTCACCAATGCCCT  1138

seq1  AGGTAGTCCTTGAGCTGACCCTGGGCTTGGAATTC  1183
      |||||||||||||||||||||||||||||||||||
seq2  AGGTAGTCCTTGAGCTGACCCTGGGCTTGGAATTC  1173

seq1: chr16_16628137_16628666
seq2: B6Ng01-116E12.g_70_599

seq1  GAATTCATGATAAATGATACAAAAGTTCATATATGCTTCGGGCCTTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATAAATGATACAAAAGTTCATATATGCTTCGGGCCTTCATG  50

seq1  TTCAGCCAGGAATCGGAGATGAGACCCAGACCTTTGCACACTTTACCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCAGGAATCGGAGATGAGACCCAGACCTTTGCACACTTTACCTAA  100

seq1  CAGAGGAGAGTCAACTTCCAGGGAGGGCTCTGACCCTGGGACCAGGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGAGTCAACTTCCAGGGAGGGCTCTGACCCTGGGACCAGGTGAG  150

seq1  AACACCATCTTGTATCCCGGGTCACTCAGAGACCAGTCCTCACAGGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCATCTTGTATCCCGGGTCACTCAGAGACCAGTCCTCACAGGAGAG  200

seq1  TGCACGGACCACAAAAGCAACAGAGCTTCTTCAATAGGGTCCCTTCGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGGACCACAAAAGCAACAGAGCTTCTTCAATAGGGTCCCTTCGAGC  250

seq1  CTTCATCTTCAGGCAGGAGGCAGAGCTGATACCCAGACCTCAGTGCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTTCAGGCAGGAGGCAGAGCTGATACCCAGACCTCAGTGCACTT  300

seq1  TCCCCACCAGAGGAGAGTCAGCCTGCAGGGAAAGCTCTGACCCCAGGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCAGAGGAGAGTCAGCCTGCAGGGAAAGCTCTGACCCCAGGACC  350

seq1  AGGTGAGAACATCATCTTGGATCCTGGGTCCCTCAGAGACCAGTCTGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGAACATCATCTTGGATCCTGGGTCCCTCAGAGACCAGTCTGAGC  400

seq1  AGGAGTGCATGGACTGCAGAAGCAATATAGCTTCTAGGACAGGATTCCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGCATGGACTGCAGAAGCAATATAGCTTCTAGGACAGGATTCCGT  450

seq1  CAGGCCTTCATCTTCAGCCAGGAGACAGAGCTGAGCTCCAGATCTCTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTTCATCTTCAGCCAGGAGACAGAGCTGAGCTCCAGATCTCTATG  500

seq1  TACTTTCCCTTCAAGAGGAGAGCTTGCCTG  530
      ||||||||||||||||||||||||||||||
seq2  TACTTTCCCTTCAAGAGGAGAGCTTGCCTG  530