BAC Information

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BAC

Clone NameB6Ng01-116L03
Chromosome16 (Build37)
Map Location 38,322,222 - 38,405,047
singlet/doubletdoublet
Overlap gene4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a
Upstream geneStxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2
Downstream geneAdprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116L03.bB6Ng01-116L03.g
ACCDH921629DH921630
length1,146990
definitionDH921629|Mus musculus domesticus DNA, BAC clone: B6Ng01-116L03, 5' end.DH921630|Mus musculus domesticus DNA, BAC clone: B6Ng01-116L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,403,894 - 38,405,047)(38,322,222 - 38,323,209)
sequence
gaattcaggacctctaccaccttctcctttgtagtcacaatccagctgtt
catggatacttctcccaacgtccctttgaagctaagatgccaatgattac
aaaagatacaaaacacaaataaaaattagtcttgagtctttagccgctaa
accagtgcccttcccatagtctttacaactccaggagagcgactctattt
cctggttggtgttcatggtcttgggccctcctgtctgctctatgatgcac
gcagaacaaaactatgctaacttggatgataaattatacagtcactttaa
tttgagctgattttctcacttgcttatgtggctttagtagagttatcttg
tggctactgccttccattaactggaaagtccccagtgtaatgtgattttg
tgctcagagtttggacagacctgactttgaatctcagcttctctatcttc
aagttgagaagcatctggaagattaggagcaggttactttgcctttctga
aacccaatatcctcctgtggagcatgggaaccatgacggcgctcatatgc
cagattcaattgtgaggataaaataggatagaggaagtcagaggtgtggt
gactcaaaacccagtacctaattatttcgttcccttagaaagaaggcttc
acagccgagcagtggtggcaaacacctttaatcccagcacttgggaggca
gaggcaggcggatttccgagttcaaggccagcctggtctacagagtgagt
tccaggacaaccagggctacacagagaaaccctgtcttgaaaaaaacaaa
caaacaaaaaaaaccccaaaacccaaaaaacgaagaagaagaagaagatg
agaagaggaagaagaagaagaagaggaagaagaagaagaaaggcgacttc
agatctagatacaagtgtgtagagctttgtggattatggccacctctaag
gaacaaagtagtctcacccatggtggaattttcatgaatcgaggtctgga
gagacgctagctgaggcacacaaactggtgaggaaatcaggcttcgacat
caggtcttctgactcatttccataccacctatgcctcggaccggcactcc
gttcttgttcttcttgtcctctccttcagcagtggcctcagagcag
gaattcactgaagagaattttaagtaagattttaatttttgaattgattt
tactttttctgaaaaacatttttaatgatcttttaaaaatgtgattgagt
tgtttagagtacatacatatcaaccgctgatttgagcacattagtagttt
aattcttatttttttcccatgaatttgaggcagctggaaagctttcagag
atggtttttaaattctttctttttttaatcagatctttgggaatttagaa
tagcattgtttgattatattcacctccctcctcaaccttccattttcctc
cccacccacccgagtgtcctccttttgtttgtttgttttttacccataat
gccccatttgtgttgtccacaacacatactcttgggtatgtggccttcca
ctggggtgtggcaactaccaggctcagcactcataaaaggtcatagaatg
tttaaaaaattaattacggtcttagtcagggtttctattcctggacaaaa
catcatgaccaagaagcaagttggggaggaaagggtttattcggcttaca
cttccatactgctgttcatcaccaaaggaagtcaggactggaactcaagc
aggtcaggaagcaggagctgatgcagaggccatggagggatgttctttac
tggcttgctcagcctgctctcttatagaaccaagactaccaacccagaga
tggcaccacccacaagaggacctccccgcttgatcattaattgagaaaat
gtcttatagttggatctcatgaaggcatttcccccaactgaagctccttt
ctctgtgataactccagcctgtgtcaagttgacacaaaactagccagtac
aattaccttccattttaagtgaatgtagatatgcgtgtgcatgcatgcgt
gtgtgcatttgtgcgtggggggtggggagtgtctgcttaatgctatggca
ccacttgggaagtttgaggataccttcaggagtgggctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_38403894_38405047
seq2: B6Ng01-116L03.b_50_1195 (reverse)

seq1  CTGCTCTGGAGGGCCACTGCTGTGAAGAGAGTGACAAGAAGGAACAAGGA  50
      ||||||||   |||||||||||  | ||||| |||||||| |||||| ||
seq2  CTGCTCTG--AGGCCACTGCTG-AAGGAGAG-GACAAGAA-GAACAA-GA  44

seq1  ACGGAGTGCCGTGCCGAGGCATAGGTGGTATGGAAATGAGTCAGAAGACC  100
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  ACGGAGTGCCGGTCCGAGGCATAGGTGGTATGGAAATGAGTCAGAAGACC  94

seq1  TGATGTCGAAGCCTGATTTCCTCACCAGTTTGTGTGCCTCAGCTAGCGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCGAAGCCTGATTTCCTCACCAGTTTGTGTGCCTCAGCTAGCGTC  144

seq1  TCTCAGAACCTCGATTCATGAAAATTCCACCATGGGTTGAGACTACTTTG  200
      ||||   ||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTCCAGACCTCGATTCATGAAAATTCCACCATGGG-TGAGACTACTTTG  193

seq1  TTCCTTAGAGGTGGCCAT-ATCCACAAAGCTCTACACACTTGTATCTAGA  249
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCCTTAGAGGTGGCCATAATCCACAAAGCTCTACACACTTGTATCTAGA  243

seq1  TCTGAAGTCGCCTTTCTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCCTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTCGCCTTTCTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCCTCT  293

seq1  TCTTCTTCTTCTTCTTCTTCTTCGTTTTTTTGGGTTTTGGGGTTTTTTTT  349
      || || |||||||||||||||||| |||||||||||||||||||||||||
seq2  TC-TCATCTTCTTCTTCTTCTTCG-TTTTTTGGGTTTTGGGGTTTTTTTT  341

seq1  GTTTGTTTGTTTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGTTGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGTTGTC  391

seq1  CTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCGGAAATCCGCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCGGAAATCCGCCT  441

seq1  GCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTTTGCCACCACTGCTCG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTTTGCCACCACTGCTCG  491

seq1  GCTGTGAAGCCTTCTTTCTAAGGGAACGAAATAATTAGGTACTGGGTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAAGCCTTCTTTCTAAGGGAACGAAATAATTAGGTACTGGGTTTT  541

seq1  GAGTCACCACACCTCTGACTTCCTCTATCCTATTTTATCCTCACAATTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACCACACCTCTGACTTCCTCTATCCTATTTTATCCTCACAATTGA  591

seq1  ATCTGGCATATGAGCGCCGTCATGGTTCCCATGCTCCACAGGAGGATATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCATATGAGCGCCGTCATGGTTCCCATGCTCCACAGGAGGATATT  641

seq1  GGGTTTCAGAAAGGCAAAGTAACCTGCTCCTAATCTTCCAGATGCTTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCAGAAAGGCAAAGTAACCTGCTCCTAATCTTCCAGATGCTTCTC  691

seq1  AACTTGAAGATAGAGAAGCTGAGATTCAAAGTCAGGTCTGTCCAAACTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAAGATAGAGAAGCTGAGATTCAAAGTCAGGTCTGTCCAAACTCT  741

seq1  GAGCACAAAATCACATTACACTGGGGACTTTCCAGTTAATGGAAGGCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAAAATCACATTACACTGGGGACTTTCCAGTTAATGGAAGGCAGT  791

seq1  AGCCACAAGATAACTCTACTAAAGCCACATAAGCAAGTGAGAAAATCAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAAGATAACTCTACTAAAGCCACATAAGCAAGTGAGAAAATCAGC  841

seq1  TCAAATTAAAGTGACTGTATAATTTATCATCCAAGTTAGCATAGTTTTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTAAAGTGACTGTATAATTTATCATCCAAGTTAGCATAGTTTTGT  891

seq1  TCTGCGTGCATCATAGAGCAGACAGGAGGGCCCAAGACCATGAACACCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGTGCATCATAGAGCAGACAGGAGGGCCCAAGACCATGAACACCAA  941

seq1  CCAGGAAATAGAGTCGCTCTCCTGGAGTTGTAAAGACTATGGGAAGGGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAATAGAGTCGCTCTCCTGGAGTTGTAAAGACTATGGGAAGGGCA  991

seq1  CTGGTTTAGCGGCTAAAGACTCAAGACTAATTTTTATTTGTGTTTTGTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTAGCGGCTAAAGACTCAAGACTAATTTTTATTTGTGTTTTGTAT  1041

seq1  CTTTTGTAATCATTGGCATCTTAGCTTCAAAGGGACGTTGGGAGAAGTAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTAATCATTGGCATCTTAGCTTCAAAGGGACGTTGGGAGAAGTAT  1091

seq1  CCATGAACAGCTGGATTGTGACTACAAAGGAGAAGGTGGTAGAGGTCCTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAACAGCTGGATTGTGACTACAAAGGAGAAGGTGGTAGAGGTCCTG  1141

seq1  AATTC  1154
      |||||
seq2  AATTC  1146

seq1: chr16_38322222_38323209
seq2: B6Ng01-116L03.g_69_1058

seq1  GAATTCACTGAAGAGAATTTTAAGTAAGATTTTAATTTTTGAATTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAAGAGAATTTTAAGTAAGATTTTAATTTTTGAATTGATTT  50

seq1  TACTTTTTCTGAAAAACATTTTTAATGATCTTTTAAAAATGTGATTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTCTGAAAAACATTTTTAATGATCTTTTAAAAATGTGATTGAGT  100

seq1  TGTTTAGAGTACATACATATCAACCGCTGATTTGAGCACATTAGTAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGAGTACATACATATCAACCGCTGATTTGAGCACATTAGTAGTTT  150

seq1  AATTCTTATTTTTTTCCCATGAATTTGAGGCAGCTGGAAAGCTTTCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTATTTTTTTCCCATGAATTTGAGGCAGCTGGAAAGCTTTCAGAG  200

seq1  ATGGTTTTTAAATTCTTTCTTTTTTTAATCAGATCTTTGGGAATTTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTTAAATTCTTTCTTTTTTTAATCAGATCTTTGGGAATTTAGAA  250

seq1  TAGCATTGTTTGATTATATTCACCTCCCTCCTCAACCTTCCATTTTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTGTTTGATTATATTCACCTCCCTCCTCAACCTTCCATTTTCCTC  300

seq1  CCCACCCACCCGAGTGTCCTCCTTTTGTTTGTTTGTTTTTTACCCATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCACCCGAGTGTCCTCCTTTTGTTTGTTTGTTTTTTACCCATAAT  350

seq1  GCCCCATTTGTGTTGTCCACAACACATACTCTTGGGTATGTGGCCTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATTTGTGTTGTCCACAACACATACTCTTGGGTATGTGGCCTTCCA  400

seq1  CTGGGGTGTGGCAACTACCAGGCTCAGCACTCATAAAAGGTCATAGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTGTGGCAACTACCAGGCTCAGCACTCATAAAAGGTCATAGAATG  450

seq1  TTTAAAAAATTAATTACGGTCTTAGTCAGGGTTTCTATTCCTGGACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAATTAATTACGGTCTTAGTCAGGGTTTCTATTCCTGGACAAAA  500

seq1  CATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTTACA  550

seq1  CTTCCATACTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATACTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAGC  600

seq1  AGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTAC  650

seq1  TGGCTTGCTCAGCCTGCTCTCTTATAGAACCAAGACTACCAACCCAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGCTCAGCCTGCTCTCTTATAGAACCAAGACTACCAACCCAGAGA  700

seq1  TGGCACCACCCACAAGAGGACCTCCCCGCTTGATCATTAATTGAGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCACCCACAAGAGGACCTCCCCGCTTGATCATTAATTGAGAAAAT  750

seq1  GTCTTATAGTTGGATCTCATGAAGGCATTTCCCCCAACTGAAGCTCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATAGTTGGATCTCATGAAGGCATTTCCCCCAACTGAAGCTCCTTT  800

seq1  CTCTGTGATAACTCCAGCCTGTGTCAAGTTGACACAAAACTAGCCAGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGATAACTCCAGCCTGTGTCAAGTTGACACAAAACTAGCCAGTAC  850

seq1  AATTACCTTCCATTTTAAGTGAATGTAGATATGCGTGTGCATGCATGCGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCTTCCATTTTAAGTGAATGTAGATATGCGTGTGCATGCATGCGT  900

seq1  GTGTGCATTTGTGCGTGGGGG--TGGGAGTGTCTGCCTAATGCCATGGCA  948
      |||||||||||||||||||||   |||||||||||| |||||| ||||||
seq2  GTGTGCATTTGTGCGTGGGGGGTGGGGAGTGTCTGCTTAATGCTATGGCA  950

seq1  -CACATGGGAAGTTTGAGGATAACTTTCAGGAGTTGGCTCT  988
       ||| |||||||||||||||| || ||||||||| ||||||
seq2  CCACTTGGGAAGTTTGAGGAT-ACCTTCAGGAGTGGGCTCT  990