BAC Information

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BAC

Clone NameB6Ng01-117G06
Chromosome16 (Build37)12 (Build37)
Map Location 32,920,674 - 32,920,93149,166,701 - 49,167,218
singlet/doubletsingletsinglet
Overlap geneLrch3
Upstream geneLOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1
Downstream geneEG625660, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4, Zfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117G06.bB6Ng01-117G06.g
ACCDH922144DH922145
length9711,113
definitionDH922144|Mus musculus domesticus DNA, BAC clone: B6Ng01-117G06, 5' end.DH922145|Mus musculus domesticus DNA, BAC clone: B6Ng01-117G06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,920,674 - 32,920,931)(49,166,701 - 49,167,218)
sequence
gaattcaaaaattaaaattgattttgaagaggcattagaaaatataataa
acaatgtatttgctacagaagatatagtttgctgtgaacaggaagaaata
ctagactgaccaactaacactcctacagaataggcttgtgctgtaagatc
aagaatcgataaatgggacctcaaaaaattgcaaagcttctgcaaagcaa
aagacaccgtcaataagacaaaaaggccaccaacagattgggaaaggatc
tttacctatcccaaatcaggtaggggactaatatccaatatatataaaga
actcaagaaggtggactccagaaaatcaaataaccccattaaaaaatggg
gctcagagctgaacaaagaattctcacctgaggaataccgaatggcagag
aaacacctgaaaaaatgttcaacatccttaatcatcaggaaaatgcaaat
caaaacaacactgagattccacttcactccagtcagaatggctaagatca
aaaactcaggtgacagcagatgttggcgaggatgtggagaaaggggaaca
ctccttcattgttggtgggattgcaggcttgtacaaccactctggaaatc
agtctggcggttcctcagaaaattggacatagtactaccagaggatcccg
caatacctctcctgggcatatatccagaagatgtcccaacgggtaagaag
aacacatgctccactatgttcatagaagccttgtttataatagccagaag
ctggaaagaacccagatgcccctcaacagtggaatggatacagaaaatgt
ggtacatttacacaatggaatactactcagctattaaaaaaaatgaattt
atgaaattcctaggcaaatggatggacctggagggtatcatcctgagtga
agtaacccaatcacaaaggaactcgcacaatatgtactcactgataagtg
gataatagcccagaaacttag
gaattcaggaccagaactaaagggaaaaaagccataaaggaatgctgttt
acttgtgttctctaccttttttcttattatatgaatgatcacactaggta
gcacctgccccctcaaattttgctcagccaacccacatcagtcattcatc
aaggcatttctagttgaaagctaatggtggcattttttttaagtgaggtt
cctcttccgagataattgtaactgtgtcatgttgacaaaaaactaggcaa
tacagaagcctagctaaagtgcagataacaagtgagtgcagagtgatcag
cccctaaagattcacctatatcacactctttcctcaaggcttagataaca
ttgtggaggaagtgcaggaagattgtcagaattacagggaaagtaaaacc
tctgaatgtagcaacttccatacatgacaggttcactgtgctaattaact
cacagtggtatgactgcctacaaaagacttatacaagatcagtcaaccaa
ctttcaggcattgattggggaatggatttgcatggcttagagattattga
agtagagacagtagaaagattgcaagagtcaggggaaagttcttgaagat
tgtgtctcctaaaaatataagtaaaaaatgtaactaaagctacacccata
atatctcaccaacttgactaaacatgacctgaacaagaactccacaagat
gactataaccatgctaacagtgaagtggagaatctcaggagacctcagct
ctagaaaaacaactacagtcaaatgaagactaatgacagcaggagaaata
atcctaattttcctttgatacaccaattggttatccattatcaaatgatc
agccctgaatacatacatacaagtaataccatacagacagaagagtttaa
acttatatatttagtaatgcacacatgtgtacgtgtatatgcatgtctgt
gtgtatgtatgattgtatgatgtatgtatgatgcatgtatgcatatctga
cactagtacagaaaaagagactatgcgtgtgaatgcaagccaggagggga
gtacagaaagggtggaaagacaaagtaagacaaggtccatgagctttttg
tgcactctttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_32920674_32920931
seq2: B6Ng01-117G06.b_213_477

seq1  CCTCATAAAATTGCAAAGCTTCTATAAGGCAAAAGATACCGTCAATAAGA  50
      ||||| |||||||||||||||||  || |||||||| |||||||||||||
seq2  CCTCAAAAAATTGCAAAGCTTCTGCAAAGCAAAAGACACCGTCAATAAGA  50

seq1  CAAAAAGGCCACCAACAAATTGGGAAACGATCTTTACCTGTCCTAAATCA  100
      ||||||||||||||||| ||||||||| ||||||||||| ||| ||||||
seq2  CAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCCAAATCA  100

seq1  GATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTC  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTC  150

seq1  CAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCCAAACAAAG  200
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  CAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTGAACAAAG  200

seq1  AATTTGCACCTGAG-------GAATGGCTGAGAAGCACCTGAAAAAATAT  243
      ||||  ||||||||       ||||||| ||||| ||||||||||||| |
seq2  AATTCTCACCTGAGGAATACCGAATGGCAGAGAAACACCTGAAAAAATGT  250

seq1  TCAGCATCCTTAATC  258
      ||| |||||||||||
seq2  TCAACATCCTTAATC  265

seq1: chr12_49166701_49167218
seq2: B6Ng01-117G06.g_674_1179

seq1  CCTAAAAATATAAGTAAAAAATGTAACTAAAGCTACACCCATAATATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAATATAAGTAAAAAATGTAACTAAAGCTACACCCATAATATCTC  50

seq1  ACCAACTTGACTAAACATGACCTGAACAAGAACTCCACAAGATGACTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTTGACTAAACATGACCTGAACAAGAACTCCACAAGATGACTATA  100

seq1  ACCATGCTAACAGTGAAGTGGAGAATCTCAGGAGACCTCAGCTCTAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCTAACAGTGAAGTGGAGAATCTCAGGAGACCTCAGCTCTAGAAA  150

seq1  AACAACTACAGTCAAATGAAGACTAATGACAGCAGGAGAAATAATCCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTACAGTCAAATGAAGACTAATGACAGCAGGAGAAATAATCCTAA  200

seq1  TTTTCCTTTGATACACCAATTGGTTATCCATTATCAAATGATCAGCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTGATACACCAATTGGTTATCCATTATCAAATGATCAGCCCTG  250

seq1  AATACATACATACAAGTAATACCATACAGACAGAAGAGTTTAAACTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATACATACAAGTAATACCATACAGACAGAAGAGTTTAAACTTATA  300

seq1  TATTTAGTAATGCACACATGTGTACGTGTATATGCATGTCTGTGTGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGTAATGCACACATGTGTACGTGTATATGCATGTCTGTGTGTATG  350

seq1  TATGATTGTATGAATGTATGTATTATGCATGTATGCATATCTAACAACTA  400
      |||||||||||| |||||||||| |||||||||||||||||| || ||||
seq2  TATGATTGTATG-ATGTATGTATGATGCATGTATGCATATCTGAC-ACTA  398

seq1  GTACAGAAAAAGAGACTATGCGTGTGAATGCAAGCCAAGGAGGGGAGTAC  450
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  GTACAGAAAAAGAGACTATGCGTGTGAATGCAAGCC-AGGAGGGGAGTA-  446

seq1  CAGAGAGGAGTGGAAAGGACAAAAGTAAGACCATAGGTTTCCATGTAGCT  500
      |||| ||| ||||||| ||| ||||||||||   |||  |||||| ||||
seq2  CAGAAAGG-GTGGAAA-GAC-AAAGTAAGAC--AAGG--TCCATG-AGCT  488

seq1  TTTTGTGCACTCTTTATT  518
      ||||||||||||||||||
seq2  TTTTGTGCACTCTTTATT  506