BAC Information

Click to search

BAC

Clone NameB6Ng01-117H16
Chromosome16 (Build37)
Map Location 54,017,675 - 54,144,446
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC433027
Downstream geneLOC100043442, LOC100043449, LOC667927, LOC436421
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117H16.bB6Ng01-117H16.g
ACCDH922209DH922210
length1,1981,079
definitionDH922209|Mus musculus domesticus DNA, BAC clone: B6Ng01-117H16, 5' end.DH922210|Mus musculus domesticus DNA, BAC clone: B6Ng01-117H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,143,243 - 54,144,446)(54,017,675 - 54,018,766)
sequence
gaattccactgattgaaaaagattatatcatttgttccctttagtaacag
tgacatataaaagtatagacaacaactggtggcacagagctaaattccca
gtcaaataagaagcagagttaggaggatacaaagtatgatttcagcctag
cttgcaaaatgagttcaaagtctactaggataacttatattatccatcaa
acgaaatcacaaccgatcaaaatgtagatctgtgtataatcccaatgatt
aatctacaaatcattttctgacccaaggctcaatgatcattgccaaaaaa
aaaaaaaacaaaaaaaaaagtataaagattgtaatagtcagaagagaagg
acaggtttgctgtgagattttgttttttgggaatatcagaagttatacac
attaagtcacaccaagatgagagcctaaacctgaaatgaacaataacaat
aaaatacatggtaaaagagagtaaaaatagtgttcaatcgtacagcaaaa
ctataggaaaacaagaaatactgagactgggagaagtaatcttccccaaa
gaaaaacaaaccaatatctcaatttaattataaatttcagggcttaacca
gaggttacagattcaaagatgtgcttgatgttcagtgtaagtgagtaaaa
atagatattctttggggaaattatgccaattttcttgtgaacattgaata
tttagaagtacaaaacaattttcaatacttagaattttgtagtagatttg
catctgttgggttgacatttatgagactataatgttcttataaaatgatt
atttccttgaagagtactgcctacagtagattggtgttctgaatgtgtac
tgaaagtgctcattggaaataaatagaggcttactgatataggtcacagg
cagagtgattcccttgtactcaaactcttgttaattttattttttccatg
tatttgttcttttgtatttatagtaaaaccacttacattgaagacctttg
aatgattttacagacagacaccatgaaaacataacattatgctgttggaa
accagctgagccactactggatccactatatagattcttacagaattcca
atattctttattaagtgataaatactaataatgcctactttccaaccctg
atggaggttccaatagccctgtttttaaaaatcacatgtaaaagacaa
gaattctattgtctttttttgtgaagtatgtgcagggtgatatgtttatt
attgttgatagtcattattgttctagtgttcttttaattacaatcattat
aatgagcattcttggaatataatcagaattcttgggaacacaaaagtggg
agactagcaaagtttccaactgtaatataatttttaagtatcttctcaat
aacatttgtgatatctgggggaaattagaaagataaggtttgtcaataac
taggtagaagcctgaggatatttctagctcctctcttcagagcaattttg
actgaaaagcttaactacaaacaagtagaaagtctcaaatcagttccatt
tcagaaaaacagccttgcctgaagttatttggatatattggagttgaaaa
aacaagctctaaggaaattttgatatgaaccagaagtgattcccatgagg
tagtaaaatcaagtaatgcatttaagaatctgattataaagaaggttaaa
gttcatatttcagaatattggacagattaacttaatgttctattataaaa
gtgagagtaagttttcaaccaagtggtggaattaggtttcaaaaacaaga
acattgacctctaacctgccctgcctgcaggttgtgctagggcagtggta
cctccaaacttgttggagcagtcaaccaatgactggtgtaactcaagaga
caccatcagagggagagagaccatcctcagcatttcctggatagcctgga
actggaagctggaaagagaaacctagggtaaagcaaaaaggtcattgaag
tgattctgaatcatatttcggctatagtcgcagacctatgcctagcccaa
tcatcatcagaaagtctttctctaccaagtgatggaagcatatgcagaaa
cctacacctaaacatgaggcaaagatcaggaactttgtcgaggagggtta
ttaaggatataggagccagatggtgtgaggagaccaggagactatgtcta
catagtcacttagcaaggctcatagcctcaccagctgaagtgctacatgc
agactgcatgtctgaactagtctctgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_54143243_54144446
seq2: B6Ng01-117H16.b_42_1239 (reverse)

seq1  TTGTCTTTATCAATGTGATTTTTTAAAAACAAGGCCTTATT-GAACCTCC  49
      |||||||| |  |||||| |||||||||||| |||  |||| ||||||||
seq2  TTGTCTTT-TACATGTGA-TTTTTAAAAACAGGGC--TATTGGAACCTCC  46

seq1  ATCAGGTTTTGAAAGTAAGCA-TATTAGTATTTATCAACTTTAATAAAGA  98
      |||||| || ||||||| ||| |||||||||||||||   ||||||||||
seq2  ATCAGGGTTGGAAAGTAGGCATTATTAGTATTTATCA--CTTAATAAAGA  94

seq1  ATATTGAATTTCTGTAAGAATCTATATAGTGGATCCAGTTAGT-GCTCAG  147
      |||||| | ||||||||||||||||||||||||||||| |||| ||||||
seq2  ATATTGGAATTCTGTAAGAATCTATATAGTGGATCCAG-TAGTGGCTCAG  143

seq1  CTGGTTTTCCAACAGCATAATGTTATGTTTTCATGGTGTCTGTCTGTAAA  197
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGG-TTTCCAACAGCATAATGTTATGTTTTCATGGTGTCTGTCTGTAAA  192

seq1  ATCATTCAAAGTTCTTCAATGTAAGTGGTTTTACTATAAATAC-AAAGAA  246
      ||||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  ATCATTCAAAGGTCTTCAATGTAAGTGGTTTTACTATAAATACAAAAGAA  242

seq1  CAAATACATGGAAAAAATAAAATTAACAAGAGTTTGAGTACAAGGGAATC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACATGGAAAAAATAAAATTAACAAGAGTTTGAGTACAAGGGAATC  292

seq1  ACTCTGCCTGTGACCTATATCAGTAAGCCTCTATTTTATTTCCAATGAGC  346
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACTCTGCCTGTGACCTATATCAGTAAGCCTCTA-TTTATTTCCAATGAGC  341

seq1  ACTTTCAGTACACATTCAGAACACCAATCTACTGTAGGCAGTACTCTTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGTACACATTCAGAACACCAATCTACTGTAGGCAGTACTCTTCA  391

seq1  AGGAAATAATCATTTTATAAGAACATTATAGTCTCATAAATGTCAACCCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATAATCATTTTATAAGAACATTATAGTCTCATAAATGTCAACCCA  441

seq1  ACAGATGCAAATCTACTACAAAATTCTAAGTATTGAAAATTGTTTTGTAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGCAAATCTACTACAAAATTCTAAGTATTGAAAATTGTTTTGTAC  491

seq1  TTCTAAATATTCAATGTTCACAAGAAAATTGGCATAATTTCCCCAAAGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATATTCAATGTTCACAAGAAAATTGGCATAATTTCCCCAAAGAA  541

seq1  TATCTATTTTTACTCACTTACACTGAACATCAAGCACATCTTTGAATCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATTTTTACTCACTTACACTGAACATCAAGCACATCTTTGAATCTG  591

seq1  TAACCTCTGGTTAAGCCCTGAAATTTATAATTAAATTGAGATATTGGTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCTGGTTAAGCCCTGAAATTTATAATTAAATTGAGATATTGGTTT  641

seq1  GTTTTTCTTTGGGGAAGATTACTTCTCCCAGTCTCAGTATTTCTTGTTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTTTGGGGAAGATTACTTCTCCCAGTCTCAGTATTTCTTGTTTT  691

seq1  CCTATAGTTTTGCTGTACGATTGAACACTATTTTTACTCTCTTTTACCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGTTTTGCTGTACGATTGAACACTATTTTTACTCTCTTTTACCAT  741

seq1  GTATTTTATTGTTATTGTTCATTTCAGGTTTAGGCTCTCATCTTGGTGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTATTGTTATTGTTCATTTCAGGTTTAGGCTCTCATCTTGGTGTG  791

seq1  ACTTAATGTGTATAACTTCTGATATTCCCAAAAAACAAAATCTCACAGCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATGTGTATAACTTCTGATATTCCCAAAAAACAAAATCTCACAGCA  841

seq1  AACCTGTCCTTCTCTTCTGACTATTACAATCTTTATACTTTTTTTTTTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AACCTGTCCTTCTCTTCTGACTATTACAATCTTTATACTTTTTTTTTTG-  890

seq1  TTTTTTTTTTTTTTGGCAATGATCATTGAGCCTTGGGTCAGAAAATGATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTGGCAATGATCATTGAGCCTTGGGTCAGAAAATGATT  940

seq1  TGTAGATTAATCATTGGGATTATACACAGATCTACATTTTGATCGGTTGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTAATCATTGGGATTATACACAGATCTACATTTTGATCGGTTGT  990

seq1  GATTTCGTTTGATGGATAATATAAGTTATCCTAGTAGACTTTGAACTCAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCGTTTGATGGATAATATAAGTTATCCTAGTAGACTTTGAACTCAT  1040

seq1  TTTGCAAGCTAGGCTGAAATCATACTTTGTATCCTCCTAACTCTGCTTCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAGCTAGGCTGAAATCATACTTTGTATCCTCCTAACTCTGCTTCT  1090

seq1  TATTTGACTGGGAATTTAGCTCTGTGCCACCAGTTGTTGTCTATACTTTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGACTGGGAATTTAGCTCTGTGCCACCAGTTGTTGTCTATACTTTT  1140

seq1  ATATGTCACTGTTACTAAAGGGAACAAATGATATAATCTTTTTCAATCAG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCACTGTTACTAAAGGGAACAAATGATATAATCTTTTTCAATCAG  1190

seq1  TGGAATTC  1204
      ||||||||
seq2  TGGAATTC  1198

seq1: chr16_54017675_54018766
seq2: B6Ng01-117H16.g_69_1147

seq1  GAATTCTATTGTCTTTTTTTGTGAAGTATGTGCAGGGTGATATGTTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGTCTTTTTTTGTGAAGTATGTGCAGGGTGATATGTTTATT  50

seq1  ATTGTTGATAGTCATTATTGTTCTAGTGTTCTTTTAATTACAATCATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGATAGTCATTATTGTTCTAGTGTTCTTTTAATTACAATCATTAT  100

seq1  AATGAGCATTCTTGGAATATAATCAGAATTCTTGGGAACACAAAAGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCATTCTTGGAATATAATCAGAATTCTTGGGAACACAAAAGTGGG  150

seq1  AGACTAGCAAAGTTTCCAACTGTAATATAATTTTTAAGTATCTTCTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGCAAAGTTTCCAACTGTAATATAATTTTTAAGTATCTTCTCAAT  200

seq1  AACATTTGTGATATCTGGGGGAAATTAGAAAGATAAGGTTTGTCAATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGTGATATCTGGGGGAAATTAGAAAGATAAGGTTTGTCAATAAC  250

seq1  TAGGTAGAAGCCTGAGGATATTTCTAGCTCCTCTCTTCAGAGCAATTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGAAGCCTGAGGATATTTCTAGCTCCTCTCTTCAGAGCAATTTTG  300

seq1  ACTGAAAAGCTTAACTACAAACAAGTAGAAAGTCTCAAATCAGTTCCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAGCTTAACTACAAACAAGTAGAAAGTCTCAAATCAGTTCCATT  350

seq1  TCAGAAAAACAGCCTTGCCTGAAGTTATTTGGATATATTGGAGTTGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAACAGCCTTGCCTGAAGTTATTTGGATATATTGGAGTTGAAAA  400

seq1  AACAAGCTCTAAGGAAATTTTGATATGAACCAGAAGTGATTCCCATGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCTCTAAGGAAATTTTGATATGAACCAGAAGTGATTCCCATGAGG  450

seq1  TAGTAAAATCAAGTAATGCATTTAAGAATCTGATTATAAAGAAGGTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAATCAAGTAATGCATTTAAGAATCTGATTATAAAGAAGGTTAAA  500

seq1  GTTCATATTTCAGAATATTGGACAGATTAACTTAATGTTCTATTATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATATTTCAGAATATTGGACAGATTAACTTAATGTTCTATTATAAAA  550

seq1  GTGAGAGTAAGTTTTCAACCAAGTGGTGGAATTAGGTTTCAAAAACAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGTAAGTTTTCAACCAAGTGGTGGAATTAGGTTTCAAAAACAAGA  600

seq1  ACATTGACCTCTAACCTGCCCTGCCTGCAGGTTGTGCTAGGGCAGTGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGACCTCTAACCTGCCCTGCCTGCAGGTTGTGCTAGGGCAGTGGTA  650

seq1  CCTCCAAACTTGTTGGAGCAGTCAACCAATGACTGGTGTAACTCAAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAACTTGTTGGAGCAGTCAACCAATGACTGGTGTAACTCAAGAGA  700

seq1  CACCATCAGAGGGAGAGAGACCATCCTCAGCATTTCCTGGATAGCCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCAGAGGGAGAGAGACCATCCTCAGCATTTCCTGGATAGCCTGGA  750

seq1  ACTGGAAGCTGGAAAGAGAAACCTAGGGTAAAGCAAAAAGGTCATTGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAGCTGGAAAGAGAAACCTAGGGTAAAGCAAAAAGGTCATTGAAG  800

seq1  TGATTCTGAATCATA-TTCGGCTATAGTCGCAGACCTATGCCTAGCCCAA  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGATTCTGAATCATATTTCGGCTATAGTCGCAGACCTATGCCTAGCCCAA  850

seq1  TCATCATCAGAAAGTCTTCCTCTACCAAGTGATGGAAGCATATGCAGAAA  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCATCATCAGAAAGTCTTTCTCTACCAAGTGATGGAAGCATATGCAGAAA  900

seq1  CCTACACCTAAACATGAGGCAAAGATCAGGGAACCTTGTCGAGGAGGGTT  949
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  CCTACACCTAAACATGAGGCAAAGATCA-GGAACTTTGTCGAGGAGGGTT  949

seq1  ATTAAGGATAATAGGAGCCAGATGGTGTGAGGAGACCAGGAGACTATGGC  999
      ||||||||| ||||||||||||||||||||||||||||||||||||| | 
seq2  ATTAAGGAT-ATAGGAGCCAGATGGTGTGAGGAGACCAGGAGACTAT-GT  997

seq1  CTACATAGTCAACTTAGCAGGGCTCATAAGGCCTCACCCAGCCTGAAGTG  1049
      |||||||||| |||||||| ||||||||  |||||| |||| ||||||||
seq2  CTACATAGTC-ACTTAGCAAGGCTCATA--GCCTCA-CCAG-CTGAAGTG  1042

seq1  CTAACCATGCAGACTGCATGGTTCTGAACTAGGTCCTCTGCAT  1092
      |||  |||||||||||||||  ||||||||||   ||||||||
seq2  CTA--CATGCAGACTGCATG--TCTGAACTAG--TCTCTGCAT  1079