BAC Information

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BAC

Clone NameB6Ng01-118D11
Chromosome16 (Build37)
Map Location 87,441,787 - 87,606,910
singlet/doubletdoublet
Overlap geneUsp16, Cct8, B130034C11Rik, LOC435486, ORF63
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088
Downstream geneBach1, LOC100039901, Grik1, EG622373, Cldn17, Cldn8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118D11.bB6Ng01-118D11.g
ACCDH922754DH922755
length1,1831,188
definitionDH922754|Mus musculus domesticus DNA, BAC clone: B6Ng01-118D11, 5' end.DH922755|Mus musculus domesticus DNA, BAC clone: B6Ng01-118D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,605,715 - 87,606,910)(87,441,787 - 87,442,989)
sequence
gaattccaattatggcccatcgatgcaagacagtcaaatccataggcgct
ggtcacaacacattcacagtcatgagcagagagaaacgcttagaactcag
ctttctctcctctcacacagtccagggacgtaccgcccacttcagactat
gtctttcggtaatcagaagagtcaagcagagacatgcccgcaggccaagc
tgatttagataattcctcataaagataagacacttttcccaggttctagg
ttgtctgagttgacaattcaaactatcacaacttgtgactaaaatataga
gaaaaagacctgcctcttgagggagtgctccatccttctacacatagtag
tacacacacagcctgtcaagtcattgtatatccacacaaaaatggtcatg
acaagcagagatggctggtggtatcatcaccaccacctccaccaccacca
ccaccaccaccaccaccatcatcaacatttttctttctgaagtgcagatg
attgtctctgctttgacaatgatttggttttaattgattcctcatattaa
gctaagccaagctattccatagcaaacaaagagtccaatgtcttattaaa
tggaaggctatcgctttggaatctcttgtggggagctttaaaaagcatct
ttgatgcatgtgcatacggccttaaggcaagattaggagacagagatgac
attctactttagcaggatggacagcaaagcaaccctgcaccattgaaact
atttcgatggagacctacggccacagaaagataaaaacatggagaattcc
ttgtttgctgcagtggccttttgctgtggtggtttttattactgtttgcg
gctgggaatcaaacctagtgcctggctcactgccgagctatagcagcagc
ccctgggtttcgaataataaagaaatattattatattctgcttcatgtta
tattaaatgtcccagaaatcttcacactgtaggaacccttttattatgcc
atatggttttatttggccattaaactctgcttgcttggtctttcacgctt
ctctcttcttcatctttcttctctcttctcctctctcctctctctagata
tacatatcaacattaggcatggtggtggaaacaacatttttcagaagtcc
cttgcatcctaattccaagggactgtcttctca
gaattccaggatagctaggattacaccgggaaaaaaaagagaaggaaagc
gttagggaaaagggtcactgttttgaggagagaagggttacactactcta
ggtgatcaaattactgggaaagagggctttgccatttgtgtaaacaggtt
taaactggagggcagcgtcaagccttaacgaggtgggagagaaaactatt
tgaattccttgttggttctaaacacaagttttatgttatttgctaggaga
tgcatctgatatttctttcagcaggtttgttaatcatcaaattaatgtga
agcttgctgttgtcccttcttcaggagccttgcaggctgtgttgagtgga
gccaacataggtccactggagccattgttaactgagaatgtgggcagata
tggattagacagtggtggagataattccaaatcctgggtttctagaacct
tccctcttgtggcacttcttgtctctaaaccagagagcagtaagacacta
aaatcgtgagcaggtaactaatgttaaccaccctggctttaagtggtctt
ggctggtaaccacgctgggaagagctgtcagtttatccctgttaataaaa
ggacagagaaaggggctccagcatgaaagtactgccttatccaaccatat
acaatccactctcttttccttatccaaccatatacaatacactctttttt
catttctttaaatcattttagaaatgatttataaacacttattcattgat
agtagtacacacaacctttcagaactggaagaaaaaaaaaacccataaag
acaatattttatagcagctctctagccccatcgtggatgttttgtgtttt
tgccaattcaattacataaaggacttttccctccagctttttaatgaaag
ctttaaagcagatgtgaagagaggagcgtgccttggcacactccccaaca
tacttcagccacacttcggccacgtctggatgtcctgaaagctgcaactg
ctctcagtagactgccatttcccttctgcaagcacagcagtttcctgttg
gccaaacgttgctgtttgaaacaatagggtgagcaccctgtctctatcta
agcttaaagttatcttactatccagagtaagaaaactaggctctatccgg
ttttgattatgtctggttctacggattggcatgtgccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_87605715_87606910
seq2: B6Ng01-118D11.b_48_1230 (reverse)

seq1  TGAGAGGACAGTCCTTTGGAAATAGGGATGGCAAGGGACTTCTG-AAAAT  49
      ||||| |||||||| |||||| || |||| |||||||||||||| |||||
seq2  TGAGAAGACAGTCCCTTGGAATTA-GGAT-GCAAGGGACTTCTGAAAAAT  48

seq1  GTGTGTTTTCCACACCATTGCCTAAATGTTGATATGTATATCTAG-GAGA  98
      || ||||| |  ||||| ||||| ||||||||||||||||||||| ||||
seq2  GT-TGTTTCCACCACCA-TGCCT-AATGTTGATATGTATATCTAGAGAGA  95

seq1  AGGAGGGAGAGGAGGAGAGGAAGAGGAGGAAGATGAAGAAGAGGAGAAGC  148
           ||||| ||||||| | |||| || ||||||||||||| |||||||
seq2  -----GGAGA-GAGGAGAAG-AGAGAAGAAAGATGAAGAAGA-GAGAAGC  137

seq1  GTGAAAGACCAAGCAAGCAGAGTTTTATGGCCAAATAAAACCATATGGCA  198
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGAAAGACCAAGCAAGCAGAGTTTAATGGCCAAATAAAACCATATGGCA  187

seq1  TAATAAAAGGGTTCCTACAGTGTGAGGATTTCTGGGACATTTAATATTAA  248
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  TAATAAAAGGGTTCCTACAGTGTGAAGATTTCTGGGACATTTAATA-TAA  236

seq1  CATGAAGCAGAATATAAATAATATTTCTTTATTATTCGAAACCCAGGGGC  298
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CATGAAGCAGAATAT-AATAATATTTCTTTATTATTCGAAACCCAGGGGC  285

seq1  TGCTGCTATAGCTCGGCAGTGAGCCAGGCACTAGGTTTGATTCCCAGCCG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTATAGCTCGGCAGTGAGCCAGGCACTAGGTTTGATTCCCAGCCG  335

seq1  CAAACAGTAATAAAAACCACCACAGCAAAAGGCCACTGCAGCAAACAAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGTAATAAAAACCACCACAGCAAAAGGCCACTGCAGCAAACAAGG  385

seq1  AATTCTCCATGTTTTTATCTTTCTGTGGCCGTAGGTCTCCATCGAAATAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCCATGTTTTTATCTTTCTGTGGCCGTAGGTCTCCATCGAAATAG  435

seq1  TTTCAATGGTGCAGGGTTGCTTTGCTGTCCATCCTGCTAAAGTAGAATGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATGGTGCAGGGTTGCTTTGCTGTCCATCCTGCTAAAGTAGAATGT  485

seq1  CATCTCTGTCTCCTAATCTTGCCTTAAGGCCGTATGCACATGCATCAAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTGTCTCCTAATCTTGCCTTAAGGCCGTATGCACATGCATCAAAG  535

seq1  ATGCTTTTTAAAGCTCCCCACAAGAGATTCCAAAGCGATAGCCTTCCATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTTAAAGCTCCCCACAAGAGATTCCAAAGCGATAGCCTTCCATT  585

seq1  TAATAAGACATTGGACTCTTTGTTTGCTATGGAATAGCTTGGCTTAGCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGACATTGGACTCTTTGTTTGCTATGGAATAGCTTGGCTTAGCTT  635

seq1  AATATGAGGAATCAATTAAAACCAAATCATTGTCAAAGCAGAGACAATCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAGGAATCAATTAAAACCAAATCATTGTCAAAGCAGAGACAATCA  685

seq1  TCTGCACTTCAGAAAGAAAAATGTTGATGATGGTGGTGGTGGTGGTGGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACTTCAGAAAGAAAAATGTTGATGATGGTGGTGGTGGTGGTGGTG  735

seq1  GTGGTGGTGGAGGTGGTGGTGATGATACCACCAGCCATCTCTGCTTGTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTGGAGGTGGTGGTGATGATACCACCAGCCATCTCTGCTTGTCA  785

seq1  TGACCATTTTTGTGTGGATATACAATGACTTGACAGGCTGTGTGTGTACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATTTTTGTGTGGATATACAATGACTTGACAGGCTGTGTGTGTACT  835

seq1  ACTATGTGTAGAAGGATGGAGCACTCCCTCAAGAGGCAGGTCTTTTTCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTGTAGAAGGATGGAGCACTCCCTCAAGAGGCAGGTCTTTTTCTC  885

seq1  TATATTTTAGTCACAAGTTGTGATAGTTTGAATTGTCAACTCAGACAACC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTAGTCACAAGTTGTGATAGTTTGAATTGTCAACTCAGACAACC  935

seq1  TAGAACCTGGGAAAAGTGTCTTATCTTTATGAGGAATTATCTAAATCAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCTGGGAAAAGTGTCTTATCTTTATGAGGAATTATCTAAATCAGC  985

seq1  TTGGCCTGCGGGCATGTCTCTGCTTGACTCTTCTGATTACCGAAAGACAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTGCGGGCATGTCTCTGCTTGACTCTTCTGATTACCGAAAGACAT  1035

seq1  AGTCTGAAGTGGGCGGTACGTCCCTGGACTGTGTGAGAGGAGAGAAAGCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAAGTGGGCGGTACGTCCCTGGACTGTGTGAGAGGAGAGAAAGCT  1085

seq1  GAGTTCTAAGCGTTTCTCTCTGCTCATGACTGTGAATGTGTTGTGACCAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTAAGCGTTTCTCTCTGCTCATGACTGTGAATGTGTTGTGACCAG  1135

seq1  CGCCTATGGATTTGACTGTCTTGCATCGATGGGCCATAATTGGAATTC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTATGGATTTGACTGTCTTGCATCGATGGGCCATAATTGGAATTC  1183

seq1: chr16_87441787_87442989
seq2: B6Ng01-118D11.g_69_1256

seq1  GAATTCCAGGATAGCTAGGATTACACCGGGAAAAAAAAGAGAAGGAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATAGCTAGGATTACACCGGGAAAAAAAAGAGAAGGAAAGC  50

seq1  GTTAGGGAAAAGGGTCACTGTTTTGAGGAGAGAAGGGTTACACTACTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGAAAAGGGTCACTGTTTTGAGGAGAGAAGGGTTACACTACTCTA  100

seq1  GGTGATCAAATTACTGGGAAAGAGGGCTTTGCCATTTGTGTAAACAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATCAAATTACTGGGAAAGAGGGCTTTGCCATTTGTGTAAACAGGTT  150

seq1  TAAACTGGAGGGCAGCGTCAAGCCTTAACGAGGTGGGAGAGAAAACTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGGAGGGCAGCGTCAAGCCTTAACGAGGTGGGAGAGAAAACTATT  200

seq1  TGAATTCCTTGTTGGTTCTAAACACAAGTTTTATGTTATTTGCTAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCCTTGTTGGTTCTAAACACAAGTTTTATGTTATTTGCTAGGAGA  250

seq1  TGCATCTGATATTTCTTTCAGCAGGTTTGTTAATCATCAAATTAATGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTGATATTTCTTTCAGCAGGTTTGTTAATCATCAAATTAATGTGA  300

seq1  AGCTTGCTGTTGTCCCTTCTTCAGGAGCCTTGCAGGCTGTGTTGAGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCTGTTGTCCCTTCTTCAGGAGCCTTGCAGGCTGTGTTGAGTGGA  350

seq1  GCCAACATAGGTCCACTGGAGCCATTGTTAACTGAGAATGTGGGCAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACATAGGTCCACTGGAGCCATTGTTAACTGAGAATGTGGGCAGATA  400

seq1  TGGATTAGACAGTGGTGGAGATAATTCCAAATCCTGGGTTTCTAGAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTAGACAGTGGTGGAGATAATTCCAAATCCTGGGTTTCTAGAACCT  450

seq1  TCCCTCTTGTGGCACTTCTTGTCTCTAAACCAGAGAGCAGTAAGACACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTTGTGGCACTTCTTGTCTCTAAACCAGAGAGCAGTAAGACACTA  500

seq1  AAATCGTGAGCAGGTAACTAATGTTAACCACCCTGGCTTTAAGTGGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGTGAGCAGGTAACTAATGTTAACCACCCTGGCTTTAAGTGGTCTT  550

seq1  GGCTGGTAACCACGCTGGGAAGAGCTGTCAGTTTATCCCTGTTAATAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTAACCACGCTGGGAAGAGCTGTCAGTTTATCCCTGTTAATAAAA  600

seq1  GGACAGAGAAAGGGGCTCCAGCATGAAAGTACTGCCTTATCCAACCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAGAAAGGGGCTCCAGCATGAAAGTACTGCCTTATCCAACCATAT  650

seq1  ACAATCCACTCTCTTTTCCTTATCCAACCATATACAATACACTCTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCACTCTCTTTTCCTTATCCAACCATATACAATACACTCTTTTTT  700

seq1  CATTTCTTTAAATCATTTTAGAAATGATTTATAAACACTTATTCATTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTAAATCATTTTAGAAATGATTTATAAACACTTATTCATTGAT  750

seq1  AGTAGTACACACAACCTTTCAGAACTGGAAGAAAAAAAAAACCCATAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTACACACAACCTTTCAGAACTGGAAGAAAAAAAAAACCCATAAAG  800

seq1  ACAATATTTTATAGCAGCTCTCTAGCCCCATCGTGGATGTTTTGTGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTTTATAGCAGCTCTCTAGCCCCATCGTGGATGTTTTGTGTTTT  850

seq1  TGCCAATTCAATTACAT-AAGGACTTTTCCCTCCAGCTTTTTAAATGAAA  899
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  TGCCAATTCAATTACATAAAGGACTTTTCCCTCCAGCTTTTT-AATGAAA  899

seq1  GCTTTAAAGCAGATGTGAAGAGAGGAGCGTGCCTTGGCACACTCCCCAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAAGCAGATGTGAAGAGAGGAGCGTGCCTTGGCACACTCCCCAAC  949

seq1  ATACTCCAGCCACAC-TCGGCCACGTCTGGATGTCCTGAAAAGCTGCAAC  998
      ||||| ||||||||| |||||||||||||||||||||| |||||||||||
seq2  ATACTTCAGCCACACTTCGGCCACGTCTGGATGTCCTG-AAAGCTGCAAC  998

seq1  TGCTCTCCAGTAGGAACTGCCATTTCCCTTCCTGCAAAGCACAGCAGGTT  1048
      |||||| ||||||  ||||||||||||||| |||| |||||||||| |||
seq2  TGCTCT-CAGTAG--ACTGCCATTTCCCTT-CTGC-AAGCACAGCA-GTT  1042

seq1  CCCTGTGGCCAAAACGTTGCTGTTTTGAAACAATAGGGTGAAGCACCCTG  1098
       ||||| | | ||||||||||| ||||||||||||||||| |||||||||
seq2  TCCTGTTGGCCAAACGTTGCTG-TTTGAAACAATAGGGTG-AGCACCCTG  1090

seq1  CCTCTATCTTAAGCTTAAAAGTTATCTTACATACAAAGAGTAAAGAAAAA  1148
       ||||||| ||||||| ||||||||||||| ||   |||||||   ||||
seq2  TCTCTATC-TAAGCTT-AAAGTTATCTTAC-TATCCAGAGTAA--GAAAA  1135

seq1  CTAGGCTCATTCCTGTTTATGATTATGTCTGTTTCTTCAGGATTGGCATG  1198
      ||||||||  ||| |||| |||||||||||| |||| | |||||||||||
seq2  CTAGGCTCTATCCGGTTT-TGATTATGTCTGGTTCTAC-GGATTGGCATG  1183

seq1  TGCCC  1203
      |||||
seq2  TGCCC  1188