BAC Information

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BAC

Clone NameB6Ng01-119L04
Chromosome16 (Build37)
Map Location 85,400,198 - 85,523,914
singlet/doubletdoublet
Overlap geneCyyr1
Upstream geneLOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App
Downstream geneLOC100039994, LOC622000, Adamts1, Adamts5, LOC100040025, LOC100039780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119L04.bB6Ng01-119L04.g
ACCDH923843DH923844
length6831,199
definitionDH923843|Mus musculus domesticus DNA, BAC clone: B6Ng01-119L04, 5' end.DH923844|Mus musculus domesticus DNA, BAC clone: B6Ng01-119L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,523,232 - 85,523,914)(85,400,198 - 85,401,411)
sequence
gaattctttgaatcaataatctgcttccatctttagaagtcaggaaaaga
caaagaaaataaactcaaaggcaaaaatcaatgagcaggagaacaaaaga
gtggtaagaaaagtaatgaagccaagagctgagcctctgaaaatatcaat
agcattgacaggcttctaggaacactggggggagagggagagacataaat
taccagtgtttgaaaagagtgaactgtttaagttatctatcacaataatt
tacttctgctgttatgatgaataaccatgaaatggagaaatgtcaagctg
cacaacgaatttaaatcaagggatacacatatcagttcttcctcattctt
aataattttctgtccctccagccaataaataagcatttgatccctttctc
tgagtttttcaagcaatttaatctctcgattctttaaccatttctccctt
ccacttgcacatttgtgaccatgccagctcagatagctctacttgattgt
aaactcctaagggaagactacatcttacattcatttttttagatctcttt
ctttcactgtgtgacacccagtcccttagcagtttagattgtgataaaac
actatccggttagaagacattcacagacgtaaacaaatcttcacttgtaa
gatccagagagagagagggagggagggagggag
gaattctatgtgagaagatagcatgagcggacataccaatctcttgggtt
gctgagttaaacacggaccatggtagggcaatggtggaactctgaggtca
gcaaggatgctcccttataatttgagcaatcaagacagagatttcaatag
acaaatacagtgatgattttaagaaatggcatgtttctgaacaaatttta
taagtagaaggctgggaatgtagctcagagatagaacgcttgctcaaaca
tgcttgttccaacccttagcattacattaaataacaaacaaacaaacaaa
aaaataaacagggttggtaatggtaagatggttcagtggctaaatgtccc
tgccaccaaacctgatgacttgactttgattctcaggacccacttagagg
aacgggagaactgacccctacaagccgtcatctagtctccacacatgcac
tgtgacatccagtcatcccacacgccaaatcagtaatgtttaaaacaagc
aaacaccaggaaaatagcaggatactgttgctaaggaaatgggaaggggt
tgaaaaggaaaaggaagggttatataggagataaatgcaatgaaggcacc
ttagagatgggaggaaagcaggaagggggagctgtgttagagatgccaaa
ttcattagctcattaatgaaaaaaaaatgaaaacagccattcattaaaga
gaattttgagaaaatgtagagttagagaagaaaaatcaatgcaaatattt
gcatcaggaatataatatgtagtcgatatataactgttttttctcttatt
tttttgttttgcttcttgattaataaaatttgaattgagaaaagagaaaa
tgccatagcaaaactcatattctgaataattaatacatactgaataactt
tcctaatgtgaaccaaggggagccaatttagtttggtgaacaattggagg
gggttacaggaaaggagaggccagagactggatatgattcccaggtggaa
ggatgaggtgactacttgattgactggggaaatctggggggagcatgttg
cttcaaaacaccactcatcagatttggactcctgactgctcataggacct
gcaggtagaaattggtcttcctgcatccttttatttatggagatacatca
aggatctagggaccctgggatgctccatcggactggcctctcttgtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_85523232_85523914
seq2: B6Ng01-119L04.b_49_731 (reverse)

seq1  CTCCCTCCCTCCCTCCCTCTCTCTCTCTGGATCTTACAAGTGAAGATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCTCCCTCCCTCTCTCTCTCTGGATCTTACAAGTGAAGATTTG  50

seq1  TTTACGTCTGTGAATGTCTTCTAACCGGATAGTGTTTTATCACAATCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGTCTGTGAATGTCTTCTAACCGGATAGTGTTTTATCACAATCTAA  100

seq1  ACTGCTAAGGGACTGGGTGTCACACAGTGAAAGAAAGAGATCTAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAAGGGACTGGGTGTCACACAGTGAAAGAAAGAGATCTAAAAAAA  150

seq1  TGAATGTAAGATGTAGTCTTCCCTTAGGAGTTTACAATCAAGTAGAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTAAGATGTAGTCTTCCCTTAGGAGTTTACAATCAAGTAGAGCTA  200

seq1  TCTGAGCTGGCATGGTCACAAATGTGCAAGTGGAAGGGAGAAATGGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCTGGCATGGTCACAAATGTGCAAGTGGAAGGGAGAAATGGTTAA  250

seq1  AGAATCGAGAGATTAAATTGCTTGAAAAACTCAGAGAAAGGGATCAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCGAGAGATTAAATTGCTTGAAAAACTCAGAGAAAGGGATCAAATG  300

seq1  CTTATTTATTGGCTGGAGGGACAGAAAATTATTAAGAATGAGGAAGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTATTGGCTGGAGGGACAGAAAATTATTAAGAATGAGGAAGAACT  350

seq1  GATATGTGTATCCCTTGATTTAAATTCGTTGTGCAGCTTGACATTTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTGTATCCCTTGATTTAAATTCGTTGTGCAGCTTGACATTTCTCC  400

seq1  ATTTCATGGTTATTCATCATAACAGCAGAAGTAAATTATTGTGATAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGGTTATTCATCATAACAGCAGAAGTAAATTATTGTGATAGATA  450

seq1  ACTTAAACAGTTCACTCTTTTCAAACACTGGTAATTTATGTCTCTCCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAACAGTTCACTCTTTTCAAACACTGGTAATTTATGTCTCTCCCTC  500

seq1  TCCCCCCAGTGTTCCTAGAAGCCTGTCAATGCTATTGATATTTTCAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCAGTGTTCCTAGAAGCCTGTCAATGCTATTGATATTTTCAGAGG  550

seq1  CTCAGCTCTTGGCTTCATTACTTTTCTTACCACTCTTTTGTTCTCCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTCTTGGCTTCATTACTTTTCTTACCACTCTTTTGTTCTCCTGCT  600

seq1  CATTGATTTTTGCCTTTGAGTTTATTTTCTTTGTCTTTTCCTGACTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATTTTTGCCTTTGAGTTTATTTTCTTTGTCTTTTCCTGACTTCTA  650

seq1  AAGATGGAAGCAGATTATTGATTCAAAGAATTC  683
      |||||||||||||||||||||||||||||||||
seq2  AAGATGGAAGCAGATTATTGATTCAAAGAATTC  683

seq1: chr16_85400198_85401411
seq2: B6Ng01-119L04.g_68_1266

seq1  GAATTCTATGTGAGAAGATAGCATGAGCGGACATACCAATCTCTTGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTGAGAAGATAGCATGAGCGGACATACCAATCTCTTGGGTT  50

seq1  GCTGAGTTAAACACGGACCATGGTAGGGCAATGGTGGAACTCTGAGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTTAAACACGGACCATGGTAGGGCAATGGTGGAACTCTGAGGTCA  100

seq1  GCAAGGATGCTCCCTTATAATTTGAGCAATCAAGACAGAGATTTCAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGATGCTCCCTTATAATTTGAGCAATCAAGACAGAGATTTCAATAG  150

seq1  ACAAATACAGTGATGATTTTAAGAAATGGCATGTTTCTGAACAAATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACAGTGATGATTTTAAGAAATGGCATGTTTCTGAACAAATTTTA  200

seq1  TAAGTAGAAGGCTGGGAATGTAGCTCAGAGATAGAACGCTTGCTCAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGAAGGCTGGGAATGTAGCTCAGAGATAGAACGCTTGCTCAAACA  250

seq1  TGCTTGTTCCAACCCTTAGCATTACATTAAATAACAAACAAACAAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTCCAACCCTTAGCATTACATTAAATAACAAACAAACAAACAAA  300

seq1  AAAATAAACAGGGTTGGTAATGGTAAGATGGTTCAGTGGCTAAATGTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAACAGGGTTGGTAATGGTAAGATGGTTCAGTGGCTAAATGTCCC  350

seq1  TGCCACCAAACCTGATGACTTGACTTTGATTCTCAGGACCCACTTAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCAAACCTGATGACTTGACTTTGATTCTCAGGACCCACTTAGAGG  400

seq1  AACGGGAGAACTGACCCCTACAAGCCGTCATCTAGTCTCCACACATGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGAGAACTGACCCCTACAAGCCGTCATCTAGTCTCCACACATGCAC  450

seq1  TGTGACATCCAGTCATCCCACACGCCAAATCAGTAATGTTTAAAACAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATCCAGTCATCCCACACGCCAAATCAGTAATGTTTAAAACAAGC  500

seq1  AAACACCAGGAAAATAGCAGGATACTGTTGCTAAGGAAATGGGAAGGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCAGGAAAATAGCAGGATACTGTTGCTAAGGAAATGGGAAGGGGT  550

seq1  TGAAAAGGAAAAGGAAGGGTTATATAGGAGATAAATGCAATGAAGGCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGGAAAAGGAAGGGTTATATAGGAGATAAATGCAATGAAGGCACC  600

seq1  TTAGAGATGGGAGGAAAGCAGGAAGGGGGAGCTGTGTTAGAGATGCCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGATGGGAGGAAAGCAGGAAGGGGGAGCTGTGTTAGAGATGCCAAA  650

seq1  TTCATTAGCTCATTAATGAAAAAAAAATGAAAACAGCCATTCATTAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAGCTCATTAATGAAAAAAAAATGAAAACAGCCATTCATTAAAGA  700

seq1  GAATTTTGAGAAAATGTAGAGTTAGAGAAGAAAAATCAATGCAAATATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGAGAAAATGTAGAGTTAGAGAAGAAAAATCAATGCAAATATTT  750

seq1  GCATCAGGAATATAATATGTAGTCGATATATAACTGTTTTTTCTCTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGGAATATAATATGTAGTCGATATATAACTGTTTTTTCTCTTATT  800

seq1  TTTTTGTTTTGCTTCTTGATTAATAAAATTTGAATTGAGAAAAAGAGAAA  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTTTGTTTTGCTTCTTGATTAATAAAATTTGAATTGAG-AAAAGAGAAA  849

seq1  ATGCCATAGCAAAACTCAATATTCTGAATAATTAATACATACTGAATAAC  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGCCATAGCAAAACTC-ATATTCTGAATAATTAATACATACTGAATAAC  898

seq1  TTTCCTAATGTGAACCAA-GGGAGCCAATTTAGTTTAGTGAACAATTGGA  949
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  TTTCCTAATGTGAACCAAGGGGAGCCAATTTAGTTTGGTGAACAATTGGA  948

seq1  GGGAGATTACAGGAAAAGAAGAGGCCAGAGACTGGATATGATTCCCAGTT  999
      ||| | ||||||| |||| ||||||||||||||||||||||||||||| |
seq2  GGG-GGTTACAGG-AAAGGAGAGGCCAGAGACTGGATATGATTCCCAGGT  996

seq1  GGAAGGATGAAGGTGACATACTTGATTGACTGGGGAAATCTTGGGGGAGC  1049
      ||||||||| ||||||| ||||||||||||||||||||||| ||||||||
seq2  GGAAGGATG-AGGTGAC-TACTTGATTGACTGGGGAAATCTGGGGGGAGC  1044

seq1  AGTGTTGCTTCAGAACACCAACTCATCAGATTTGGACTCACTGACTGCCT  1099
      | |||||||||| |||||| ||||||||||||||||||| ||||||| ||
seq2  A-TGTTGCTTCAAAACACC-ACTCATCAGATTTGGACTC-CTGACTG-CT  1090

seq1  CATAGGACCTGGAAGGTAAGAAATTGGTCTT-CTGCAT-CTTTTATTTAT  1147
      |||||||||| | |||| ||||||||||||| |||||| |||||||||||
seq2  CATAGGACCT-GCAGGT-AGAAATTGGTCTTCCTGCATCCTTTTATTTAT  1138

seq1  -GAGATACATTCCAGTGAATTCTTAGGACTCT--GATGCCTCATCATCGT  1194
       |||||||||  ||  ||  |||  |||| ||  |||||  ||||     
seq2  GGAGATACAT--CAAGGA--TCTAGGGACCCTGGGATGCTCCATC-----  1179

seq1  GGTCTGGCCTCTCTTGTATG  1214
      || |||||||||||||||||
seq2  GGACTGGCCTCTCTTGTATG  1199