BAC Information

Click to search

BAC

Clone NameB6Ng01-119L21
Chromosome16 (Build37)
Map Location 16,272,356 - 16,382,954
singlet/doubletdoublet
Overlap genePkp2, EG433003, Yars2, Dnm1l, LOC665743
Upstream geneLOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e
Downstream geneFgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119L21.bB6Ng01-119L21.g
ACCDH923875DH923876
length1,1271,159
definitionDH923875|Mus musculus domesticus DNA, BAC clone: B6Ng01-119L21, 5' end.DH923876|Mus musculus domesticus DNA, BAC clone: B6Ng01-119L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,381,829 - 16,382,954)(16,272,356 - 16,273,533)
sequence
gaattccagatactagaagccctgcattggttgaggcatatttggatcca
gagaattggctggtaagcccagaaccctggtagttatataagtctgaata
atattttagaagaaactaaggattattccctgacttctgccagtcccagg
atacatagtaagccagtcacaatgaaatcaccattcaggatgcaggagag
tctggctagtactcaggagatgcagtaagggcaggcagctgagtcagcac
aggctgtgctatagaaacagacgtagtgatggtgagaaaacaaagtacac
tgccagagaaggctgttttcaaacgtgtgaagcctgtacctggtacgtgc
cagaaaatcaggagggcatgcaaggaccagccatggctgactcaatcccc
tttaggtccagagctggggtgaggagctcttgggttcatagcttctcctt
tggactagaggagagaaggcacatgcaaatgttacctccatctgccaatt
actcaaggtctgaagtaaaagaagactgaaaagtacaaaatttatgcctg
gtggaactgaacagtggtatgacctggggcaaatgaagtgaataatgctc
tccagtccacactattaacgcagagcacatagtgccgcctttaactttgt
atctttgtgacaggggtcttggcctctctatagctttgcctggcctggaa
ctcatcatgtagacaaggctagcttcaagttcagagagatccacttgcct
ctgcttcccaaatactgggtgggactaaagacaggtaccaccacaactgg
caagagtgttcctttttttttttttttttttcagtgttccaattttaagg
agagtttatgatctcacaaaaaacccttcccaatctatttttacctggtt
ttaaggtcttatgatttcaggcttttggagtgagatccttgtgaacctct
gcacttaagctctgtgtcattgggtattagcaacatcgtgttctcctcag
aggctatgatttcaaagggatcactcataggaataataacaccagtgaat
ataaatattattcatcaaacaatgcctttgtttagtcatgttactacttg
atatttagggaggctcttctgttcaga
gaattccagtttcacagttctccacttaaaaataaaataagataaacaat
taaaaaaacctcctcaaagaaaacacctatttttctactaactgacccaa
gaaacctcaaaaagcatgctttgtttatattcttttctattttcatcccc
aaatctagaaaatgaataatcagaatataattttgttaagtgtcctgaag
acttccaccaggttgcaccagtatggaatcagttttaccctgtgcagata
atgggcatcattattcaggcttatagtatgtgcaaactcgtgtgagtgtg
caccggaggaacacctgagaaagagtgtgtgaatgatgtttctatcctag
ttgctcatctgcatgtcacttccttaatgagccagaggtgtgtgttcact
agtgttggacaggacagagatgaaggaataaagcattgatggcaaatcgc
tttgtctgtgaccttcgattgttcttgaccctgttgggttgctattcttt
gctttgccttttctttctctaacataaatgaatgtaaggcatgtatgtag
actatagagctatgtggcagtaaggctgagaagcagtcatagaaaacata
aagacagctggctacacataaagataagtgctggctctgaaatgtcatgt
tctccctcagcagtgtgtaaatggcattttttacatcaagaaatcattca
cctgtagtgtcagcagtagctgtgactctctctagttacaatataatcta
ggcttttgtacccagcggaattggtaagagcactgtcattcagcaagggt
ctcagaggattgagaccagatgggcactgagagcagcttgttttaatgaa
gcatagtgtcaactttgtccaagcacaggactttatagctcatactctca
tcctggtatcaggcaagggagctctagagacaggcaggaagctcttattg
gctcgaaactgagaagtgacagcctacagcagctgacatattggctagag
agtcatctatgggaaatgcagttttaactagacagcatgaaagctttcca
ttagtcttaaccacaatctgcagtttatggctttgagtctgacttcattg
gcataagaagtaagagagaaaaaaacccttacgctacttggtggcatatc
acaaaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_16381829_16382954
seq2: B6Ng01-119L21.b_49_1175 (reverse)

seq1  TCTGAACAGAAGAGCCT-CCTAAATATCCAAGGTAGTAAACATGACTAAA  49
      ||||||||||||||||| ||||||||||  | ||||| ||||||||||||
seq2  TCTGAACAGAAGAGCCTCCCTAAATATC--AAGTAGT-AACATGACTAAA  47

seq1  CAAAGCCATTTGTTTGATG-ATAATATTTATATTCACT-GTGTTATTATT  97
      ||||| || |||||||||| |||||||||||||||||| |||||||||||
seq2  CAAAGGCA-TTGTTTGATGAATAATATTTATATTCACTGGTGTTATTATT  96

seq1  CCCTATGAGTGATTCCTTTGAAATCATAGCCTCTGA-GAGAACACGATGT  146
       |||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  -CCTATGAGTGATCCCTTTGAAATCATAGCCTCTGAGGAGAACACGATGT  145

seq1  TGCTAATA-CCAATGACACAGAGCTTAAGTGCAGAGGTTCACAAGGATCT  195
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATACCCAATGACACAGAGCTTAAGTGCAGAGGTTCACAAGGATCT  195

seq1  CACTCCAAAAGCCTGAAATCATAAGACCTTTAAAACCAGGTAAAAATAGA  245
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CACTCCAAAAGCCTGAAATCATAAGACC-TTAAAACCAGGTAAAAATAGA  244

seq1  TTGGGAAGG--TTTTTGTGAGATCATAAACTCTCCTTAAAATTGGAACAC  293
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGGGTTTTTTGTGAGATCATAAACTCTCCTTAAAATTGGAACAC  294

seq1  CTGAAAAAAAAAAAAAAAAAAGGAACACTCTTGCCAGTTGTGGTGGTACC  343
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAAAAAAAAAAAAAGGAACACTCTTGCCAGTTGTGGTGGTACC  344

seq1  TGTCTTTAGTCCCACCCAGTATTTGGGAAGCAGAGGCAAGTGGATCTCTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTAGTCCCACCCAGTATTTGGGAAGCAGAGGCAAGTGGATCTCTC  394

seq1  TGAACTTGAAGCTAGCCTTGTCTACATGATGAGTTCCAGGCCAGGCAAAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTGAAGCTAGCCTTGTCTACATGATGAGTTCCAGGCCAGGCAAAG  444

seq1  CTATAGAGAGGCCAAGACCCCTGTCACAAAGATACAAAGTTAAAGGCGGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAGAGGCCAAGACCCCTGTCACAAAGATACAAAGTTAAAGGCGGC  494

seq1  ACTATGTGCTCTGCGTTAATAGTGTGGACTGGAGAGCATTATTCACTTCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTGCTCTGCGTTAATAGTGTGGACTGGAGAGCATTATTCACTTCA  544

seq1  TTTGCCCCAGGTCATACCACTGTTCAGTTCCACCAGGCATAAATTTTGTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCCAGGTCATACCACTGTTCAGTTCCACCAGGCATAAATTTTGTA  594

seq1  CTTTTCAGTCTTCTTTTACTTCAGACCTTGAGTAATTGGCAGATGGAGGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAGTCTTCTTTTACTTCAGACCTTGAGTAATTGGCAGATGGAGGT  644

seq1  AACATTTGCATGTGCCTTCTCTCCTCTAGTCCAAAGGAGAAGCTATGAAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGCATGTGCCTTCTCTCCTCTAGTCCAAAGGAGAAGCTATGAAC  694

seq1  CCAAGAGCTCCTCACCCCAGCTCTGGACCTAAAGGGGATTGAGTCAGCCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGCTCCTCACCCCAGCTCTGGACCTAAAGGGGATTGAGTCAGCCA  744

seq1  TGGCTGGTCCTTGCATGCCCTCCTGATTTTCTGGCACGTACCAGGTACAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGTCCTTGCATGCCCTCCTGATTTTCTGGCACGTACCAGGTACAG  794

seq1  GCTTCACACGTTTGAAAACAGCCTTCTCTGGCAGTGTACTTTGTTTTCTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACACGTTTGAAAACAGCCTTCTCTGGCAGTGTACTTTGTTTTCTC  844

seq1  ACCATCACTACGTCTGTTTCTATAGCACAGCCTGTGCTGACTCAGCTGCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCACTACGTCTGTTTCTATAGCACAGCCTGTGCTGACTCAGCTGCC  894

seq1  TGCCCTTACTGCATCTCCTGAGTACTAGCCAGACTCTCCTGCATCCTGAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTACTGCATCTCCTGAGTACTAGCCAGACTCTCCTGCATCCTGAA  944

seq1  TGGTGATTTCATTGTGACTGGCTTACTATGTATCCTGGGACTGGCAGAAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATTTCATTGTGACTGGCTTACTATGTATCCTGGGACTGGCAGAAG  994

seq1  TCAGGGAATAATCCTTAGTTTCTTCTAAAATATTATTCAGACTTATATAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAATAATCCTTAGTTTCTTCTAAAATATTATTCAGACTTATATAA  1044

seq1  CTACCAGGGTTCTGGGCTTACCAGCCAATTCTCTGGATCCAAATATGCCT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGGGTTCTGGGCTTACCAGCCAATTCTCTGGATCCAAATATGCCT  1094

seq1  CAACCAATGCAGGGCTTCTAGTATCTGGAATTC  1126
      |||||||||||||||||||||||||||||||||
seq2  CAACCAATGCAGGGCTTCTAGTATCTGGAATTC  1127

seq1: chr16_16272356_16273533
seq2: B6Ng01-119L21.g_68_1226

seq1  GAATTCCAGTTTCACAGTTCTCCACTTAAAAATAAAATAAGATAAACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTTCACAGTTCTCCACTTAAAAATAAAATAAGATAAACAAT  50

seq1  TAAAAAAACCTCCTCAAAGAAAACACCTATTTTTCTACTAACTGACCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAACCTCCTCAAAGAAAACACCTATTTTTCTACTAACTGACCCAA  100

seq1  GAAACCTCAAAAAGCATGCTTTGTTTATATTCTTTTCTATTTTCATCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTCAAAAAGCATGCTTTGTTTATATTCTTTTCTATTTTCATCCCC  150

seq1  AAATCTAGAAAATGAATAATCAGAATATAATTTTGTTAAGTGTCCTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAGAAAATGAATAATCAGAATATAATTTTGTTAAGTGTCCTGAAG  200

seq1  ACTTCCACCAGGTTGCACCAGTATGGAATCAGTTTTACCCTGTGCAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACCAGGTTGCACCAGTATGGAATCAGTTTTACCCTGTGCAGATA  250

seq1  ATGGGCATCATTATTCAGGCTTATAGTATGTGCAAACTCGTGTGAGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCATCATTATTCAGGCTTATAGTATGTGCAAACTCGTGTGAGTGTG  300

seq1  CACCGGAGGAACACCTGAGAAAGAGTGTGTGAATGATGTTTCTATCCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGAGGAACACCTGAGAAAGAGTGTGTGAATGATGTTTCTATCCTAG  350

seq1  TTGCTCATCTGCATGTCACTTCCTTAATGAGCCAGAGGTGTGTGTTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCATCTGCATGTCACTTCCTTAATGAGCCAGAGGTGTGTGTTCACT  400

seq1  AGTGTTGGACAGGACAGAGATGAAGGAATAAAGCATTGATGGCAAATCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGGACAGGACAGAGATGAAGGAATAAAGCATTGATGGCAAATCGC  450

seq1  TTTGTCTGTGACCTTCGATTGTTCTTGACCCTGTTGGGTTGCTATTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGTGACCTTCGATTGTTCTTGACCCTGTTGGGTTGCTATTCTTT  500

seq1  GCTTTGCCTTTTCTTTCTCTAACATAAATGAATGTAAGGCATGTATGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCCTTTTCTTTCTCTAACATAAATGAATGTAAGGCATGTATGTAG  550

seq1  ACTATAGAGCTATGTGGCAGTAAGGCTGAGAAGCAGTCATAGAAAACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGAGCTATGTGGCAGTAAGGCTGAGAAGCAGTCATAGAAAACATA  600

seq1  AAGACAGCTGGCTACACATAAAGATAAGTGCTGGCTCTGAAATGTCATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCTGGCTACACATAAAGATAAGTGCTGGCTCTGAAATGTCATGT  650

seq1  TCTCCCTCAGCAGTGTGTAAATGGCATTTTTTACATCAAGAAATCATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCAGCAGTGTGTAAATGGCATTTTTTACATCAAGAAATCATTCA  700

seq1  CCTGTAGTGTCAGCAGTAGCTGTGACTCTCTCTAGTTACAATATAATCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGTGTCAGCAGTAGCTGTGACTCTCTCTAGTTACAATATAATCTA  750

seq1  GGCTTTTGTACCCAGCGGAATTGGTAAGAGCACTGTCATTCAGCAAGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTGTACCCAGCGGAATTGGTAAGAGCACTGTCATTCAGCAAGGGT  800

seq1  CTCAGAGGATTGAGACCAGATGGGCACTGAGAGCAGCTTGTTTTAATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGATTGAGACCAGATGGGCACTGAGAGCAGCTTGTTTTAATGAA  850

seq1  GCATAGTGTCAACTTTGTCCAAGCACAGGACTTTATAGCTCATACTCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTGTCAACTTTGTCCAAGCACAGGACTTTATAGCTCATACTCTCA  900

seq1  TCCCTGGTATCAGGCAAGGGAGCTCTAGAGACAAGGCAGGAAGCTCTTA-  949
      | |||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  T-CCTGGTATCAGGCAAGGGAGCTCTAGAGAC-AGGCAGGAAGCTCTTAT  948

seq1  TGGCCCGAAACTGAGAAGTGACAGCCTACAGCAGCTGACATATTGGCTAG  999
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCGAAACTGAGAAGTGACAGCCTACAGCAGCTGACATATTGGCTAG  998

seq1  AGAAGTCATCTATGGGAAATGCAGTTTTAACTAGACAGCAATGAAAGCCT  1049
      || |||||||||||||||||||||||||||||||||||| ||||||||  
seq2  AG-AGTCATCTATGGGAAATGCAGTTTTAACTAGACAGC-ATGAAAGC--  1044

seq1  TTCCCATTAGTCCTTAACCACAATTCTGCAGTTTATTGCGCCTTTGAAGT  1099
      || |||||||| ||||||||||| ||||||||||||   | ||||| |||
seq2  TTTCCATTAGT-CTTAACCACAA-TCTGCAGTTTAT---GGCTTTG-AGT  1088

seq1  CTGACTTCATTTGCATAAGAAAGTAAGAGAAGAAAAAAACCCTTCAGCTA  1149
      ||||||||||| ||||||| ||||||||| ||||||||||||||  ||||
seq2  CTGACTTCATTGGCATAAG-AAGTAAGAG-AGAAAAAAACCCTTACGCTA  1136

seq1  CTTTGGTGGGGAAAAAAGGAACAAAAAAT  1178
      | |||||||      |    |||||||||
seq2  C-TTGGTGG-----CATATCACAAAAAAT  1159