BAC Information

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BAC

Clone NameB6Ng01-120D20
Chromosome16 (Build37)
Map Location 15,067,311 - 15,195,921
singlet/doubletdoublet
Overlap geneLOC100042737
Upstream gene2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1, Gm1758, Snai2, Efcab1
Downstream geneLOC665653, LOC385748, LOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120D20.bB6Ng01-120D20.g
ACCDH924235DH924236
length1,242215
definitionDH924235|Mus musculus domesticus DNA, BAC clone: B6Ng01-120D20, 5' end.DH924236|Mus musculus domesticus DNA, BAC clone: B6Ng01-120D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,067,311 - 15,068,557)(15,195,707 - 15,195,921)
sequence
gaattcctcagcctggaaatttctaacaagttcttggtcctaacagaagt
ttgaggaaactagaatgtgggtgataatcagagccaccttcggacatcct
attggaacttgaggaaacttcagtggtagctgctttcttgtgatttttct
atgtatctgatccaggtcctagggagagaaggtgtgagctttctaggaca
agtgggccccttccaccaactactaaggagacactgccctctaagacata
agaacaaccaatgctgcagaggctggaactgctcagtgtataagtcagta
acttcttggttttcctgtgttcaaagccaacttcacaagactgtaagatg
catattataatcatcacatagaaaagtgactctcaactttcttaatattg
tgaccctctaattcagttcctcatgttgtagtgacctccaaccataaaat
aattttcattgctacttcataactataatgttgctactgttttgggtcac
aatgtaaatatctgatatgcaacccctataaagaggttgttcaatcccca
aaggggtcataactctcgggttgagaaatactgatttagaatgaataaga
catttgaggtagctaactgctttgccccaggttgcaaatgtcaagaaacg
tttcttttcttttttcttcttaacaaactgtggtcaagtacagggtagta
aaaagtcacagcatacatctaaaatacagaggcaactacttttaacctgg
tagagaccccccccctcagaacatgtgccccaaacattcctttttccaag
agggacagacacagatacagataggaggatgccactgcctagttatcaac
caggtcagaggagcttcacatctccatggctgactgcaagtggatccatg
ggatcaacctcagaaaatttataatactattacacggctaatgaagtatt
gtgtaccaagagctttaaccctgtcaccttatttagttcttatgaatact
tacatatattggatattagtcccctatctgattaaggataaggtaaagat
cctttcccaagctgtggtggccttttgttttattaacaatgtctttggcc
ttcgaaagccttgcattatgaagtcattattcgaattcttgatcttatct
gaccgaccacctgcgttctatatcagggattattcctgtgccatatctct
caggcctttccacctttcctctataaggtttcacgtgtctct
tctagagaagcctggtggtttgggacttgactgaagaccagaaacaaaga
gcaactgaactgaagcaaaaccatcagggccacagcatggaaagctagaa
gcaagcttcccaagctgcagcatgtgtgctgccagccagccggcgcctca
gcggcctggcttggcagcctcttactcaaactctgttttccttgggggta
ggtggaggaggtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_15067311_15068557
seq2: B6Ng01-120D20.b_44_1285

seq1  GAATTCCTCAGCCTGGAAATTTCTAACAAGTTCTTGGTCCTAACAGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGCCTGGAAATTTCTAACAAGTTCTTGGTCCTAACAGAAGT  50

seq1  TTGAGGAAACTAGAATGTGGGTGATAATCAGAGCCACCTTCGGACATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAAACTAGAATGTGGGTGATAATCAGAGCCACCTTCGGACATCCT  100

seq1  ATTGGAACTTGAGGAAACTTCAGTGGTAGCTGCTTTCTTGTGATTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAACTTGAGGAAACTTCAGTGGTAGCTGCTTTCTTGTGATTTTTCT  150

seq1  ATGTATCTGATCCAGGTCCTAGGGAGAGAAGGTGTGAGCTTTCTAGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTGATCCAGGTCCTAGGGAGAGAAGGTGTGAGCTTTCTAGGACA  200

seq1  AGTGGGCCCCTTCCACCAACTACTAAGGAGACACTGCCCTCTAAGACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCCCCTTCCACCAACTACTAAGGAGACACTGCCCTCTAAGACATA  250

seq1  AGAACAACCAATGCTGCAGAGGCTGGAACTGCTCAGTGTATAAGTCAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAACCAATGCTGCAGAGGCTGGAACTGCTCAGTGTATAAGTCAGTA  300

seq1  ACTTCTTGGTTTTCCTGTGTTCAAAGCCAACTTCACAAGACTGTAAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGGTTTTCCTGTGTTCAAAGCCAACTTCACAAGACTGTAAGATG  350

seq1  CATATTATAATCATCACATAGAAAAGTGACTCTCAACTTTCTTAATATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTATAATCATCACATAGAAAAGTGACTCTCAACTTTCTTAATATTG  400

seq1  TGACCCTCTAATTCAGTTCCTCATGTTGTAGTGACCTCCAACCATAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTCTAATTCAGTTCCTCATGTTGTAGTGACCTCCAACCATAAAAT  450

seq1  AATTTTCATTGCTACTTCATAACTATAATGTTGCTACTGTTTTGGGTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCATTGCTACTTCATAACTATAATGTTGCTACTGTTTTGGGTCAC  500

seq1  AATGTAAATATCTGATATGCAACCCCTATAAAGAGGTTGTTCAATCCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAATATCTGATATGCAACCCCTATAAAGAGGTTGTTCAATCCCCA  550

seq1  AAGGGGTCATAACTCTCGGGTTGAGAAATACTGATTTAGAATGAATAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTCATAACTCTCGGGTTGAGAAATACTGATTTAGAATGAATAAGA  600

seq1  CATTTGAGGTAGCTAACTGCTTTGCCCCAGGTTGCAAATGTCAAGAAACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAGGTAGCTAACTGCTTTGCCCCAGGTTGCAAATGTCAAGAAACG  650

seq1  TTTCTTTTCTTTTTTCTTCTTAACAAACTGTGGTCAAGTACAGGGTAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCTTTTTTCTTCTTAACAAACTGTGGTCAAGTACAGGGTAGTA  700

seq1  AAAAGTCACAGCATACATCTAAAATACAGAGGCAACTACTTTTAACCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCACAGCATACATCTAAAATACAGAGGCAACTACTTTTAACCTGG  750

seq1  TAGAGACCCCCCCCCTCAGAACATGTGCCCCAAACATTCC-TTTTCCAAG  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGAGACCCCCCCCCTCAGAACATGTGCCCCAAACATTCCTTTTTCCAAG  800

seq1  AGGGACAGACACAGATACAGATAGGAGGATGCCACTGCCTAGTTATCAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGACACAGATACAGATAGGAGGATGCCACTGCCTAGTTATCAAC  850

seq1  CAGGTCAGAGGAGCTTCACATCTCCATGGCTGACTGCAAGTGGATCCAT-  898
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGGTCAGAGGAGCTTCACATCTCCATGGCTGACTGCAAGTGGATCCATG  900

seq1  GGATCAACCTCAGAAAATTTATAATACTATTACACGGCTAATGAAGTATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAACCTCAGAAAATTTATAATACTATTACACGGCTAATGAAGTATT  950

seq1  GTGTACCAAGAGCTTTAACCCTGTCACCTTATTTAGTTCTTATGAATACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCAAGAGCTTTAACCCTGTCACCTTATTTAGTTCTTATGAATACT  1000

seq1  TACATATATTGGATATTAGTCCCCTATCTGATTTAGGAT-AGGTAAAGAT  1047
      ||||||||||||||||||||||||||||||||| ||||| ||||||||||
seq2  TACATATATTGGATATTAGTCCCCTATCTGATTAAGGATAAGGTAAAGAT  1050

seq1  CCTTTCCCAAGCTGTTGGTGCCTTTTGTCTTATTAACAGTGTCTTTTGCC  1097
      ||||||||||||||| |  ||||||||| ||||||||| ||||||| |||
seq2  CCTTTCCCAAGCTGTGGTGGCCTTTTGTTTTATTAACAATGTCTTTGGCC  1100

seq1  TTACAGAAGCTTTGCAATTTTATGAGGTTCCATTTATCG-ATTCTTGATC  1146
      || |  |||| |||||   |||||| ||  ||||  ||| ||||||||||
seq2  TT-CGAAAGCCTTGCA---TTATGAAGT--CATTATTCGAATTCTTGATC  1144

seq1  TTA-CTGCACCAGCCA-CTGCTGTTCTAT-TCAGGAATTTTTCCCCTGTG  1193
      ||| ||| |||  ||| |||| ||||||| ||||| ||| ||  ||||||
seq2  TTATCTG-ACCGACCACCTGC-GTTCTATATCAGGGATTATT--CCTGTG  1190

seq1  CCCATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTATAA-GTTTCAC-T  1241
       ||||||||   |||| |||||  || || |||||||||| ||||||| |
seq2  -CCATATCTCTCAGGCCTTTCC--ACCTT-TCCTCTATAAGGTTTCACGT  1236

seq1  GTCTCT  1247
      ||||||
seq2  GTCTCT  1242

seq1: chr16_15195707_15195921
seq2: B6Ng01-120D20.g_73_287 (reverse)

seq1  TCCACCTCCTCCACCTACCCCCAAGGAAAACAGAGTTTGAGTAAGAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCCTCCACCTACCCCCAAGGAAAACAGAGTTTGAGTAAGAGGCT  50

seq1  GCCAAGCCAGGCCGCTGAGGCGCCGGCTGGCTGGCAGCACACATGCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCCAGGCCGCTGAGGCGCCGGCTGGCTGGCAGCACACATGCTGCA  100

seq1  GCTTGGGAAGCTTGCTTCTAGCTTTCCATGCTGTGGCCCTGATGGTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGAAGCTTGCTTCTAGCTTTCCATGCTGTGGCCCTGATGGTTTTG  150

seq1  CTTCAGTTCAGTTGCTCTTTGTTTCTGGTCTTCAGTCAAGTCCCAAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTCAGTTGCTCTTTGTTTCTGGTCTTCAGTCAAGTCCCAAACCA  200

seq1  CCAGGCTTCTCTAGA  215
      |||||||||||||||
seq2  CCAGGCTTCTCTAGA  215