BAC Information

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BAC

Clone NameB6Ng01-120H19
Chromosome16 (Build37)
Map Location 26,582,037 - 26,700,082
singlet/doubletdoublet
Overlap geneIl1rap
Upstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057
Downstream geneGm606, Ostn, Uts2d, Ccdc50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120H19.bB6Ng01-120H19.g
ACCDH924419DH924420
length1,193523
definitionDH924419|Mus musculus domesticus DNA, BAC clone: B6Ng01-120H19, 5' end.DH924420|Mus musculus domesticus DNA, BAC clone: B6Ng01-120H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,698,888 - 26,700,082)(26,582,037 - 26,582,565)
sequence
gaattcctcctctaacatctcctccttctctactacttatatatcagata
ctgtaaatagacacatgatctgtcatagtttacctaatgagggatagcta
agtaagaaaagaggctgttcaaagtagacattttataatttctacaaaaa
cttacattactattaggaaagaaataggtttgaattgtagaaattcaatt
agcttaaggtctgtttgcacaaggtgaccaaatttagggtcttaataact
attctgtcacatatgtcaccacagtgatttattagtttctggagcgaacc
aattctctctagcaatttatacctcacttacagagaagtcttttgtctcc
agagacctatacgttctcctttgttaaattcttacaaatatcaagtttac
ttaagaatgaaatgacccaagttgttatatcaagagaggtatgtattatt
acccataagcttttgaaaattagctctttgggatttttgaacatttactt
ttaaaagtgaaatttagagaacaaaaatgtagttagttaatatttaataa
gtaattctcaagtatcaggggaagatgagaaaagtatggttactttaata
gaagagactaacatacattatgtaagacagactatttagacccatactcc
aggactgagaaagacaacactatactttcatggaagcatatgccaacata
tctccttcttattcatcttgctcatgtgaaagatacactccttatgtctt
taagtgagaatcagaaacatgggaagttggttgaacttaaaacaatctga
tgcctgctctttgggttcactgtgatgaagctatctagcctgaagacaat
gcaattccaaagtttgtcacacaatctgacaagtatgtgcacttgccttg
ctagtttaatgaccctgcagcccctgaaggttgaaaatcttgctaagttt
ctaaagaatataataatcatgtacattgaatatattcatcaagaccttag
actaacaaagactaggagcacctgcatgcagccaggatacctttcataat
agtgatgtcgactggtgacgtcatcagcttctttcatcaatggtccacca
gaacttcattggtgggagttcataatgaacctgaaatagaacttggcagg
aataaccagtctcctctctggaaataaatttagtcgatgaagt
ttgtagatcgtcttccacaacccttctggtttacagacagcaaaactgag
acacggagcgagactgtggccaggctaaacaaatcacactactaactagt
agggcggtcggggttcgaacttagcaaattggaggcctatttcgcccggg
gctgtgcgggttctcaggcttttgagggatctatttcagggtccttgtgc
ctagggttctcaggagtgccgctgtaagcttgaggcgagcaggaggctgt
gtcccagcacacccactccatcacatcgtagctcgcagtcccagctatga
cagccctggggagaggctgccagcaagcagccttgctagctcctttcctg
acctgcttttttttttttttttttttttttttttcttctgagggacgttc
ctgcctagggtctctttcaggcagtgagttcaggaagaaggaagagacta
caggtgctggccaccactctcccagccttggagatagcaggaactgtttt
ccttgaggggtgggggtggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_26698888_26700082
seq2: B6Ng01-120H19.b_50_1242 (reverse)

seq1  ACTTCATCGACTAAATTTATTTCAGGAGAGGA-ACTGGTTATTCCCTGCA  49
      |||||||||||||||||||||||  ||||||| |||||||||| ||||| 
seq2  ACTTCATCGACTAAATTTATTTCCAGAGAGGAGACTGGTTATT-CCTGCC  49

seq1  AAG-TCTATTTCAGTTTCATTATGGACTCCCA-CAATG-AGGTCTGGTGG  96
      ||| |||||||||| ||||||||| ||||||| ||||| || ||||||||
seq2  AAGTTCTATTTCAGGTTCATTATGAACTCCCACCAATGAAGTTCTGGTGG  99

seq1  ACCATTGATGGAAAGAAGCCTGATGACGTCA-CAGTCGACATCACTATTA  145
      ||||||||| |||||||| |||||||||||| ||||||||||||||||| 
seq2  ACCATTGAT-GAAAGAAG-CTGATGACGTCACCAGTCGACATCACTATT-  146

seq1  ATGAAAGGTATCCTGGCTGCATGCAGGTGCT-CTAGTCTTTGTTAGTCTA  194
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGAAAGGTATCCTGGCTGCATGCAGGTGCTCCTAGTCTTTGTTAGTCTA  196

seq1  AGGTCTTGATGAATATTATTCAATGTACATGATTATTATTATTCTTTAAG  244
      ||||||||||||||| |||||||||||||||||||||| |||||||| ||
seq2  AGGTCTTGATGAATA-TATTCAATGTACATGATTATTA-TATTCTTT-AG  243

seq1  AAACTTAGCAAGATTTTTCAACCTTCAGGGGCTGCAGGGTCATTAAACTA  294
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAACTTAGCAAGA-TTTTCAACCTTCAGGGGCTGCAGGGTCATTAAACTA  292

seq1  GCAAGGCAAGTGCACATACTTGTCAGATTGTGTGACAAACTTTGGAATTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCAAGTGCACATACTTGTCAGATTGTGTGACAAACTTTGGAATTG  342

seq1  CATTGTCTTCAGGCTAGATAGCTTCATCACAGTGAACCCAAAGAGCAGGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCTTCAGGCTAGATAGCTTCATCACAGTGAACCCAAAGAGCAGGC  392

seq1  ATCAGATTGTTTTAAGTTCAACCAACTTCCCATGTTTCTGATTCTCACTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATTGTTTTAAGTTCAACCAACTTCCCATGTTTCTGATTCTCACTT  442

seq1  AAAGACATAAGGAGTGTATCTTTCACATGAGCAAGATGAATAAGAAGGAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATAAGGAGTGTATCTTTCACATGAGCAAGATGAATAAGAAGGAG  492

seq1  ATATGTTGGCATATGCTTCCATGAAAGTATAGTGTTGTCTTTCTCAGTCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTGGCATATGCTTCCATGAAAGTATAGTGTTGTCTTTCTCAGTCC  542

seq1  TGGAGTATGGGTCTAAATAGTCTGTCTTACATAATGTATGTTAGTCTCTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTATGGGTCTAAATAGTCTGTCTTACATAATGTATGTTAGTCTCTT  592

seq1  CTATTAAAGTAACCATACTTTTCTCATCTTCCCCTGATACTTGAGAATTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAAGTAACCATACTTTTCTCATCTTCCCCTGATACTTGAGAATTA  642

seq1  CTTATTAAATATTAACTAACTACATTTTTGTTCTCTAAATTTCACTTTTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAAATATTAACTAACTACATTTTTGTTCTCTAAATTTCACTTTTA  692

seq1  AAAGTAAATGTTCAAAAATCCCAAAGAGCTAATTTTCAAAAGCTTATGGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAATGTTCAAAAATCCCAAAGAGCTAATTTTCAAAAGCTTATGGG  742

seq1  TAATAATACATACCTCTCTTGATATAACAACTTGGGTCATTTCATTCTTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATACATACCTCTCTTGATATAACAACTTGGGTCATTTCATTCTTA  792

seq1  AGTAAACTTGATATTTGTAAGAATTTAACAAAGGAGAACGTATAGGTCTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACTTGATATTTGTAAGAATTTAACAAAGGAGAACGTATAGGTCTC  842

seq1  TGGAGACAAAAGACTTCTCTGTAAGTGAGGTATAAATTGCTAGAGAGAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAAAAGACTTCTCTGTAAGTGAGGTATAAATTGCTAGAGAGAAT  892

seq1  TGGTTCGCTCCAGAAACTAATAAATCACTGTGGTGACATATGTGACAGAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCGCTCCAGAAACTAATAAATCACTGTGGTGACATATGTGACAGAA  942

seq1  TAGTTATTAAGACCCTAAATTTGGTCACCTTGTGCAAACAGACCTTAAGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATTAAGACCCTAAATTTGGTCACCTTGTGCAAACAGACCTTAAGC  992

seq1  TAATTGAATTTCTACAATTCAAACCTATTTCTTTCCTAATAGTAATGTAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAATTTCTACAATTCAAACCTATTTCTTTCCTAATAGTAATGTAA  1042

seq1  GTTTTTGTAGAAATTATAAAATGTCTACTTTGAACAGCCTCTTTTCTTAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTAGAAATTATAAAATGTCTACTTTGAACAGCCTCTTTTCTTAC  1092

seq1  TTAGCTATCCCTCATTAGGTAAACTATGACAGATCATGTGTCTATTTACA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTATCCCTCATTAGGTAAACTATGACAGATCATGTGTCTATTTACA  1142

seq1  GTATCTGATATATAAGTAGTAGAGAAGGAGGAGATGTTAGAGGAGGAATT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGATATATAAGTAGTAGAGAAGGAGGAGATGTTAGAGGAGGAATT  1192

seq1  C  1195
      |
seq2  C  1193

seq1: chr16_26582037_26582565
seq2: B6Ng01-120H19.g_67_595

seq1  GAATTCTTGTAGATCGTCTTCCACAACCCTTCTGGTTTACAGACAGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTAGATCGTCTTCCACAACCCTTCTGGTTTACAGACAGCAAA  50

seq1  ACTGAGACACGGAGCGAGACTGTGGCCAGGCTAAACAAATCACACTACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGACACGGAGCGAGACTGTGGCCAGGCTAAACAAATCACACTACTA  100

seq1  ACTAGTAGGGCGGTCGGGGTTCGAACTTAGCAAATTGGAGGCCTATTTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTAGGGCGGTCGGGGTTCGAACTTAGCAAATTGGAGGCCTATTTCG  150

seq1  CCCGGGGCTGTGCGGGTTCTCAGGCTTTTGAGGGATCTATTTCAGGGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGGCTGTGCGGGTTCTCAGGCTTTTGAGGGATCTATTTCAGGGTCC  200

seq1  TTGTGCCTAGGGTTCTCAGGAGTGCCGCTGTAAGCTTGAGGCGAGCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCTAGGGTTCTCAGGAGTGCCGCTGTAAGCTTGAGGCGAGCAGGA  250

seq1  GGCTGTGTCCCAGCACACCCACTCCATCACATCGTAGCTCGCAGTCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGTCCCAGCACACCCACTCCATCACATCGTAGCTCGCAGTCCCAG  300

seq1  CTATGACAGCCCTGGGGAGAGGCTGCCAGCAAGCAGCCTTGCTAGCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACAGCCCTGGGGAGAGGCTGCCAGCAAGCAGCCTTGCTAGCTCCT  350

seq1  TTCCTGACCTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGACCTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTGAGGG  400

seq1  ACGTTCCTGCCTAGGGTCTCTTTCAGGCAGTGAGTTCAGGAAGAAGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTCCTGCCTAGGGTCTCTTTCAGGCAGTGAGTTCAGGAAGAAGGAAG  450

seq1  AGACTACAGGTGCTGGCCACCACTCTCCCAGCCTTGGAGATAGCAGGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACAGGTGCTGGCCACCACTCTCCCAGCCTTGGAGATAGCAGGAAC  500

seq1  TGTTTTCCTTGAGGGGTGGGGGTGGTGGG  529
      |||||||||||||||||||||||||||||
seq2  TGTTTTCCTTGAGGGGTGGGGGTGGTGGG  529