BAC Information

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BAC

Clone NameB6Ng01-120I03
Chromosome16 (Build37)
Map Location 17,928,630 - 17,987,127
singlet/doubletdoublet
Overlap geneVpreb2
Upstream geneLOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1
Downstream geneDgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120I03.bB6Ng01-120I03.g
ACCDH924435DH924436
length1,071730
definitionDH924435|Mus musculus domesticus DNA, BAC clone: B6Ng01-120I03, 5' end.DH924436|Mus musculus domesticus DNA, BAC clone: B6Ng01-120I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,986,049 - 17,987,127)(17,928,630 - 17,929,359)
sequence
gaattcactcttggaacctctaaagaattctacctggagcgtctttgttc
cccacatgctgtatggctctgctctacagggtgaccaggagagggcgcta
aactcctttgcctccccagagctgttgagagttgcaaacctgcatgtttg
acttttccaccttattggctcatgcggtctgggtgactttgattttacca
atgtacaagcgtgggcttctttcacttggttatatctctttaagaaaaac
acggaatgtatctatttttacttttctctcaagtctgttgctaagaaaag
gacaatgactccattctctacactgttaggacaaatgactatctgtggcg
cccactggtaacctgccaaagcgcttgttgacttcaggatcactcagaac
cacaagtacctgtggctcctcacattgcttctcgccccctcccccacact
caacttctccagctcccgggcttctctcccccagcttcttcccttataac
ccagttatttcagctgtactctctccctgtcttcctgtcttggccccttc
cctctctccctctcttggtctctctcttgcccacactctcttgttctctt
gccacagcctggtccagtctgctgaccagtgtcagtccactgctttcccc
ctctgctgtggactcctgcagatgcctctggcttttctctccctcatttc
tgcaataaaaaccttcccctcaaccacaccttggagcagttctgccccgg
tttatacactcactagagttgataaatgaacgagaagagagtccaatgct
taccctgcctttgctattcaaatagtccctcaaagcagctaagttgtcag
tgaagtggagaattttgagaggttgttgtctgttgtacaggttcggggtg
ttttctttgagaccaggttggtctaggattcctgcctccttctctcagag
ctgggattgaagcatgtctcagtacgaagcagttcttgtgtgtgtgttta
tgtatgtgtatatatttgggtgatcaacggggggtgcacacgctcattcg
tcgagtgggtgtgggacatgc
gaattcagtcttctgaattattgtaataacagagcttggccttcgtgcac
cctcccgggcagtgcgatgatcactctgcccttcccggattcgtccggaa
acagaattttcctaggcaggttcccccgacaaatgcaggtttcccttcct
ttcagtttctagcgaatctttgaagggcctattaagttggcctttgtccc
gcctacccacacaatcaccaggcagagctgctttgctctgataaacatgt
tttaatatttatggtcggcaggaggctcaaagtcttgagaagtctttgtt
gccacacatatcctcaaagccgcctggagggggcagccctagccggcttg
gggtgaagctcccaggagtctttgcagacctttggaggcctaagggtcca
cctccctgctgtctgaaaggaagcagtcgctgggggtggtcagtgatctc
ccccagctctgggttggctcagaagctatcacagggctttagctaaaaca
gagtgcccagatattgtacctcccagttggagtcctttgtgattcctttc
ccagaaaaggttaaatgggttgagggttgggtgtggacacattacccagt
ataaacaaaagcactcaaaggaggctccttgtaggcaggcgctgtagagt
attaatagggtaagcctgtaggatagcagaggagagcctatagctagtct
ggcttctgctggtttttttttggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_17986049_17987127
seq2: B6Ng01-120I03.b_45_1115 (reverse)

seq1  GCATG-CCCACACCCACTCGTACGAATGAGCGTGTGCACACACACGTAGA  49
      ||||| |||||||||||||| |||||||||||||||||| | | ||| ||
seq2  GCATGTCCCACACCCACTCG-ACGAATGAGCGTGTGCAC-CCCCCGTTGA  48

seq1  TACACACAAAATATATACACATACCATAAACACACACACAAGAACTGCCT  99
      | ||| | ||||||||||||||| ||||||||||||||||||||||| ||
seq2  T-CAC-CCAAATATATACACATA-CATAAACACACACACAAGAACTG-CT  94

seq1  TCGTACTGAGAACATGCTTCAATCCCAGCTCTGAGGAGAAGGAGGCAGGA  149
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  TCGTACTGAG-ACATGCTTCAATCCCAGCTCTGA-GAGAAGGAGGCAGGA  142

seq1  ATCCTAGACCAACCTGGTCTCAAAGAAAACACCCCGAACCTGTACAACAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGACCAACCTGGTCTCAAAGAAAACACCCCGAACCTGTACAACAG  192

seq1  ACAACAAACCTCTCAAAATTCTCCACTTCACTGACAACTTAGCTGCTTTG  249
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAC-AACCTCTCAAAATTCTCCACTTCACTGACAACTTAGCTGCTTTG  241

seq1  AGGGACTATTTGAATAGCAAAGGCAGGGTAAGCATTGGACTCTCTTCTCG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTATTTGAATAGCAAAGGCAGGGTAAGCATTGGACTCTCTTCTCG  291

seq1  TTCATTTATCAACTCTAGTGAGTGTATAAACCGGGGCAGAACTGCTCCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTATCAACTCTAGTGAGTGTATAAACCGGGGCAGAACTGCTCCAA  341

seq1  GGTGTGGTTGAGGGGAAGGTTTTTATTGCAGAAATGAGGGAGAGAAAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGTTGAGGGGAAGGTTTTTATTGCAGAAATGAGGGAGAGAAAAGC  391

seq1  CAGAGGCATCTGCAGGAGTCCACAGCAGAGGGGGAAAGCAGTGGACTGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCATCTGCAGGAGTCCACAGCAGAGGGGGAAAGCAGTGGACTGAC  441

seq1  ACTGGTCAGCAGACTGGACCAGGCTGTGGCAAGAGAACAAGAGAGTGTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCAGCAGACTGGACCAGGCTGTGGCAAGAGAACAAGAGAGTGTGG  491

seq1  GCAAGAGAGAGACCAAGAGAGGGAGAGAGGGAAGGGGCCAAGACAGGAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGAGAGACCAAGAGAGGGAGAGAGGGAAGGGGCCAAGACAGGAAG  541

seq1  ACAGGGAGAGAGTACAGCTGAAATAACTGGGTTATAAGGGAAGAAGCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAGAGAGTACAGCTGAAATAACTGGGTTATAAGGGAAGAAGCTGG  591

seq1  GGGAGAGAAGCCCGGGAGCTGGAGAAGTTGAGTGTGGGGGAGGGGGCGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGAAGCCCGGGAGCTGGAGAAGTTGAGTGTGGGGGAGGGGGCGAG  641

seq1  AAGCAATGTGAGGAGCCACAGGTACTTGTGGTTCTGAGTGATCCTGAAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATGTGAGGAGCCACAGGTACTTGTGGTTCTGAGTGATCCTGAAGT  691

seq1  CAACAAGCGCTTTGGCAGGTTACCAGTGGGCGCCACAGATAGTCATTTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGCGCTTTGGCAGGTTACCAGTGGGCGCCACAGATAGTCATTTGT  741

seq1  CCTAACAGTGTAGAGAATGGAGTCATTGTCCTTTTCTTAGCAACAGACTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAGTGTAGAGAATGGAGTCATTGTCCTTTTCTTAGCAACAGACTT  791

seq1  GAGAGAAAAGTAAAAATAGATACATTCCGTGTTTTTCTTAAAGAGATATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAAGTAAAAATAGATACATTCCGTGTTTTTCTTAAAGAGATATA  841

seq1  ACCAAGTGAAAGAAGCCCACGCTTGTACATTGGTAAAATCAAAGTCACCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTGAAAGAAGCCCACGCTTGTACATTGGTAAAATCAAAGTCACCC  891

seq1  AGACCGCATGAGCCAATAAGGTGGAAAAGTCAAACATGCAGGTTTGCAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGCATGAGCCAATAAGGTGGAAAAGTCAAACATGCAGGTTTGCAAC  941

seq1  TCTCAACAGCTCTGGGGAGGCAAAGGAGTTTAGCGCCCTCTCCTGGTCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACAGCTCTGGGGAGGCAAAGGAGTTTAGCGCCCTCTCCTGGTCAC  991

seq1  CCTGTAGAGCAGAGCCATACAGCATGTGGGGAACAAAGACGCTCCAGGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGAGCAGAGCCATACAGCATGTGGGGAACAAAGACGCTCCAGGTA  1041

seq1  GAATTCTTTAGAGGTTCCAAGAGTGAATTC  1079
      ||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGAGGTTCCAAGAGTGAATTC  1071

seq1: chr16_17928630_17929359
seq2: B6Ng01-120I03.g_66_795

seq1  GAATTCAGTCTTCTGAATTATTGTAATAACAGAGCTTGGCCTTCGTGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTTCTGAATTATTGTAATAACAGAGCTTGGCCTTCGTGCAC  50

seq1  CCTCCCGGGCAGTGCGATGATCACTCTGCCCTTCCCGGATTCGTCCGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCGGGCAGTGCGATGATCACTCTGCCCTTCCCGGATTCGTCCGGAA  100

seq1  ACAGAATTTTCCTAGGCAGGTTCCCCCGACAAATGCAGGTTTCCCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTTTCCTAGGCAGGTTCCCCCGACAAATGCAGGTTTCCCTTCCT  150

seq1  TTCAGTTTCTAGCGAATCTTTGAAGGGCCTATTAAGTTGGCCTTTGTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTCTAGCGAATCTTTGAAGGGCCTATTAAGTTGGCCTTTGTCCC  200

seq1  GCCTACCCACACAATCACCAGGCAGAGCTGCTTTGCTCTGATAAACATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACCCACACAATCACCAGGCAGAGCTGCTTTGCTCTGATAAACATGT  250

seq1  TTTAATATTTATGGTCGGCAGGAGGCTCAAAGTCTTGAGAAGTCTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATTTATGGTCGGCAGGAGGCTCAAAGTCTTGAGAAGTCTTTGTT  300

seq1  GCCACACATATCCTCAAAGCCGCCTGGAGGGGGCAGCCCTAGCCGGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACATATCCTCAAAGCCGCCTGGAGGGGGCAGCCCTAGCCGGCTTG  350

seq1  GGGTGAAGCTCCCAGGAGTCTTTGCAGACCTTTGGAGGCCTAAGGGTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAAGCTCCCAGGAGTCTTTGCAGACCTTTGGAGGCCTAAGGGTCCA  400

seq1  CCTCCCTGCTGTCTGAAAGGAAGCAGTCGCTGGGGGTGGTCAGTGATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGCTGTCTGAAAGGAAGCAGTCGCTGGGGGTGGTCAGTGATCTC  450

seq1  CCCCAGCTCTGGGTTGGCTCAGAAGCTATCACAGGGCTTTAGCTAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCTCTGGGTTGGCTCAGAAGCTATCACAGGGCTTTAGCTAAAACA  500

seq1  GAGTGCCCAGATATTGTACCTCCCAGTTGGAGTCCTTTGTGATTCCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCCAGATATTGTACCTCCCAGTTGGAGTCCTTTGTGATTCCTTTC  550

seq1  CCAGAAAAGGTTAAATGGGTTGAGGGTTGGGTGTGGACACATTACCCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAAGGTTAAATGGGTTGAGGGTTGGGTGTGGACACATTACCCAGT  600

seq1  ATAAACAAAAGCACTCAAAGGAGGCTCCTTGTAGGCAGGCGCTGTAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAAAGCACTCAAAGGAGGCTCCTTGTAGGCAGGCGCTGTAGAGT  650

seq1  ATTAATAGGGTAAGCCTGTAGGATAGCAGAGGAGAGCCTATAGCTAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAGGGTAAGCCTGTAGGATAGCAGAGGAGAGCCTATAGCTAGTCT  700

seq1  GGCTTCTGCTGGTTTTTTTTGGGGGGGGGG  730
      |||||||||||||||||||| |||||||||
seq2  GGCTTCTGCTGGTTTTTTTTTGGGGGGGGG  730