BAC Information

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BAC

Clone NameB6Ng01-120O24
Chromosome16 (Build37)
Map Location 77,215,764 - 77,360,640
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039457, Nrip1, LOC100039316, 1700063K16Rik, LOC665120, Usp25
Downstream gene2810055G20Rik, LOC435483, LOC100039561, Cxadr, Btg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120O24.bB6Ng01-120O24.g
ACCDH924749DH924750
length1,1261,166
definitionDH924749|Mus musculus domesticus DNA, BAC clone: B6Ng01-120O24, 5' end.DH924750|Mus musculus domesticus DNA, BAC clone: B6Ng01-120O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,359,519 - 77,360,640)(77,215,764 - 77,216,939)
sequence
gaattcattcaggactctgactcaatatttcctttaaataaactgaaaaa
aaaccctgcaccccaaggctcctcttctttgttcacagtactttgaaaac
tttctgcgtgggaaagctgcactggaacgtttcactgtgatcagagaaaa
tcaatatcctcaaatctatgtgattttgtttactgcatgacccaatttat
aagtttagcaattatacctcttgtaaaaaatgcatttttaaggtagcaat
tgccaatatatttgtcaagcatttaaatgaaaccagaagaattttttttt
atcaataagtaatccttattttaaaatattgagaacaaggaaacaagaaa
aacttgtttggctgaactattaactcagagacaggactgtgaccagatgc
tgatgttccgcacttcaattcattgtccttccatggattattttaaaaca
cctttattaaggctctgatggatgccaagggctgaagtggacactgggga
ttcagtaatgaacaagatagatcaccggacttcatgaagcttaactctaa
tgatcttggctcattaaaatattgaccatgctttttacatctccttgatt
aatatagaataaaatgtaaccaggtaaagcgattgcagaatccagctgta
ctgggagccaagcctcatttcctgtgactatcttttctttagcctttgaa
gtatatttggctcacagagtgcttagtcaaacaaccaagtatctttgacc
tgtagctagacattttgctcaaggataaaacttacaaaacagaaaaaaaa
caaaacaaacaaacaaacaaacaaacaaaaacagaccccacacacacaca
ctggatgcctttaaattaatcttttatttgattgctgatctaaatcctgg
ttatcttccaagctcagtgtaaagtttgaaaaagtgctacagaagctaaa
agctccgggtgtgcaaagcggtactacgtgcaagagtaaatcaggaccca
gcctgcagatccagtcttaacttcctattctgtactgaactgagctcaat
gttcttgttttttactaggtattgggaaagaatgacattccaaaaacaca
aaggtgtactttccattattatctaa
gaattctcccctccatccactatccaagcaacacgctttgtaatcatcag
ttcaaacttgtataaagccagtgacaaagatgcacatggactgggtgttc
tggttgggtacccacaaacagacgtagattgtcatcgggcacttataaag
caaacggcaaagaagtgggtggactgggtatcatggctcaggtacctgca
agcagacatagtatttatttgccttttaacctattgttctcttgagcacc
cagtctttctaaacgctgtctgtacacttttgtttcttactcggtaattt
attccaggccctctgaacccattcactgttttcacagtacagcatagact
tgagacctgtccaaatcttactttcaattattctatatacttctttgagt
ttaactaactattttaattttactcttggacaatttcatacaagtttaca
atgatgcttgtaatcttctttttcttttcttatttctcctcctcctcctc
ctcctctttcttcttcattattttacttattcactttatattctgcttac
tgcccatccttcttgtcatgccttcccacaatcatttcctggtccccttc
tcctttgagcaggttggggaacccttggatatctcccatcctcaaacatc
aaatttctgtgaggctaagtgtcctcttcagggtgtgtgtgtgtgggata
ccaaattattttcttgattctaaatcatttttatttttttataaaatgtt
gttatgtatatgtacataaatatacattctattgatctttaaacttctca
atcaaatgtatttagaaacttttttatcataaaatactacttagatacgc
tcattacttatcaggaaggctaagggaaatgacatatttcaagtacatgt
tttgagctggacagcagtagaaatttgacttcatgtcatcatcacagtcc
acagtaagtttgttttgcgactgtgatgttctcctatatcctttgctggt
gactttatggcctttctgctcagagcacttcggttgaattaattgtaaag
aatgaaacaaggataagggagtacccttttcctggaactcaattacagaa
gggacggtacagaattacttccttggcctatacaagtgtgttcacatgtc
ctataaagctcgtcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_77359519_77360640
seq2: B6Ng01-120O24.b_50_1175 (reverse)

seq1  TTAGATAAT-ATGG-AAGTACAACCTTTGTGTTTT--GAATGTCATTCTT  46
      ||||||||| |||| |||||| |||||||||||||  |||||||||||||
seq2  TTAGATAATAATGGAAAGTAC-ACCTTTGTGTTTTTGGAATGTCATTCTT  49

seq1  TCCCAATACCTAGTATAAA--CAGGACATTGAGCTCAGTTCCAGTACAGA  94
      ||||||||||||||| |||   || ||||||||||||||| |||||||||
seq2  TCCCAATACCTAGTAAAAAACAAGAACATTGAGCTCAGTT-CAGTACAGA  98

seq1  ATAGG-AGTTAAGACTGGATCTGCAGGCTGGGTCCTTGATTTACTCTTGC  143
      ||||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATAGGAAGTTAAGACTGGATCTGCAGGCTGGGTCC-TGATTTACTCTTGC  147

seq1  ACGTAGTACCGCTTTGCACACCCGGAGCTTTTAGCTTCTGTAGCACTTTT  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAGTACCGCTTTGCACACCCGGAGCTTTTAGCTTCTGTAGCACTTTT  197

seq1  TCAAACTTTACACTGAGCTTGGAAGATAACCAGGATTTAGATCAGCAATC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTTACACTGAGCTTGGAAGATAACCAGGATTTAGATCAGCAATC  247

seq1  AAATAAAAGATTAATTTAAAGGCATCCAGTGTGTGTGTGTGGGGTCTGTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAGATTAATTTAAAGGCATCCAGTGTGTGTGTGTGGGGTCTGTT  297

seq1  TTTGTTTGTTTGTTTGTTTGTTTGTTTTGTTTTTTTTCTGTTTTGTAAGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTGTTTGTTTGTTTTGTTTTTTTTCTGTTTTGTAAGT  347

seq1  TTTATCCTTGAGCAAAATGTCTAGCTACAGGTCAAAGATACTTGGTTGTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCTTGAGCAAAATGTCTAGCTACAGGTCAAAGATACTTGGTTGTT  397

seq1  TGACTAAGCACTCTGTGAGCCAAATATACTTCAAAGGCTAAAGAAAAGAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAAGCACTCTGTGAGCCAAATATACTTCAAAGGCTAAAGAAAAGAT  447

seq1  AGTCACAGGAAATGAGGCTTGGCTCCCAGTACAGCTGGATTCTGCAATCG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGGAAATGAGGCTTGGCTCCCAGTACAGCTGGATTCTGCAATCG  497

seq1  CTTTACCTGGTTACATTTTATTCTATATTAATCAAGGAGATGTAAAAAGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCTGGTTACATTTTATTCTATATTAATCAAGGAGATGTAAAAAGC  547

seq1  ATGGTCAATATTTTAATGAGCCAAGATCATTAGAGTTAAGCTTCATGAAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCAATATTTTAATGAGCCAAGATCATTAGAGTTAAGCTTCATGAAG  597

seq1  TCCGGTGATCTATCTTGTTCATTACTGAATCCCCAGTGTCCACTTCAGCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGTGATCTATCTTGTTCATTACTGAATCCCCAGTGTCCACTTCAGCC  647

seq1  CTTGGCATCCATCAGAGCCTTAATAAAGGTGTTTTAAAATAATCCATGGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCATCCATCAGAGCCTTAATAAAGGTGTTTTAAAATAATCCATGGA  697

seq1  AGGACAATGAATTGAAGTGCGGAACATCAGCATCTGGTCACAGTCCTGTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAATGAATTGAAGTGCGGAACATCAGCATCTGGTCACAGTCCTGTC  747

seq1  TCTGAGTTAATAGTTCAGCCAAACAAGTTTTTCTTGTTTCCTTGTTCTCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTAATAGTTCAGCCAAACAAGTTTTTCTTGTTTCCTTGTTCTCA  797

seq1  ATATTTTAAAATAAGGATTACTTATTGATAAAAAAAAATTCTTCTGGTTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAAAATAAGGATTACTTATTGATAAAAAAAAATTCTTCTGGTTT  847

seq1  CATTTAAATGCTTGACAAATATATTGGCAATTGCTACCTTAAAAATGCAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAATGCTTGACAAATATATTGGCAATTGCTACCTTAAAAATGCAT  897

seq1  TTTTTACAAGAGGTATAATTGCTAAACTTATAAATTGGGTCATGCAGTAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACAAGAGGTATAATTGCTAAACTTATAAATTGGGTCATGCAGTAA  947

seq1  ACAAAATCACATAGATTTGAGGATATTGATTTTCTCTGATCACAGTGAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCACATAGATTTGAGGATATTGATTTTCTCTGATCACAGTGAAA  997

seq1  CGTTCCAGTGCAGCTTTCCCACGCAGAAAGTTTTCAAAGTACTGTGAACA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCAGTGCAGCTTTCCCACGCAGAAAGTTTTCAAAGTACTGTGAACA  1047

seq1  AAGAAGAGGAGCCTTGGGGTGCAGGGTTTTTTTTCAGTTTATTTAAAGGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGGAGCCTTGGGGTGCAGGGTTTTTTTTCAGTTTATTTAAAGGA  1097

seq1  AATATTGAGTCAGAGTCCTGAATGAATTC  1122
      |||||||||||||||||||||||||||||
seq2  AATATTGAGTCAGAGTCCTGAATGAATTC  1126

seq1: chr16_77215764_77216939
seq2: B6Ng01-120O24.g_68_1233

seq1  GAATTCTCCCCTCCATCCACTATCCAAGCAACACGCTTTGTAATCATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCCTCCATCCACTATCCAAGCAACACGCTTTGTAATCATCAG  50

seq1  TTCAAACTTGTATAAAGCCAGTGACAAAGATGCACATGGACTGGGTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTTGTATAAAGCCAGTGACAAAGATGCACATGGACTGGGTGTTC  100

seq1  TGGTTGGGTACCCACAAACAGACGTAGATTGTCATCGGGCACTTATAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGGTACCCACAAACAGACGTAGATTGTCATCGGGCACTTATAAAG  150

seq1  CAAACGGCAAAGAAGTGGGTGGACTGGGTATCATGGCTCAGGTACCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGGCAAAGAAGTGGGTGGACTGGGTATCATGGCTCAGGTACCTGCA  200

seq1  AGCAGACATAGTATTTATTTGCCTTTTAACCTATTGTTCTCTTGAGCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACATAGTATTTATTTGCCTTTTAACCTATTGTTCTCTTGAGCACC  250

seq1  CAGTCTTTCTAAACGCTGTCTGTACACTTTTGTTTCTTACTCGGTAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTCTAAACGCTGTCTGTACACTTTTGTTTCTTACTCGGTAATTT  300

seq1  ATTCCAGGCCCTCTGAACCCATTCACTGTTTTCACAGTACAGCATAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGGCCCTCTGAACCCATTCACTGTTTTCACAGTACAGCATAGACT  350

seq1  TGAGACCTGTCCAAATCTTACTTTCAATTATTCTATATACTTCTTTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCTGTCCAAATCTTACTTTCAATTATTCTATATACTTCTTTGAGT  400

seq1  TTAACTAACTATTTTAATTTTACTCTTGGACAATTTCATACAAGTTTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAACTATTTTAATTTTACTCTTGGACAATTTCATACAAGTTTACA  450

seq1  ATGATGCTTGTAATCTTCTTTTTCTTTTCTTATTTCTCCTCCTCCTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTTGTAATCTTCTTTTTCTTTTCTTATTTCTCCTCCTCCTCCTC  500

seq1  CTCCTCTTTCTTCTTCATTATTTTACTTATTCACTTTATATTCTGCTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTTCTTCTTCATTATTTTACTTATTCACTTTATATTCTGCTTAC  550

seq1  TGCCCATCCTTCTTGTCATGCCTTCCCACAATCATTTCCTGGTCCCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATCCTTCTTGTCATGCCTTCCCACAATCATTTCCTGGTCCCCTTC  600

seq1  TCCTTTGAGCAGGTTGGGGAACCCTTGGATATCTCCCATCCTCAAACATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGAGCAGGTTGGGGAACCCTTGGATATCTCCCATCCTCAAACATC  650

seq1  AAATTTCTGTGAGGCTAAGTGTCCTCTTCAGGGTGTGTGTGTGTGGGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTGTGAGGCTAAGTGTCCTCTTCAGGGTGTGTGTGTGTGGGATA  700

seq1  CCAAATTATTTTCTTGATTCTAAATCATTTTTATTTTTTTATAAAATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTATTTTCTTGATTCTAAATCATTTTTATTTTTTTATAAAATGTT  750

seq1  GTTATGTATATGTACATAAATATACATTCTATTGATCTTTAAACTTCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTATATGTACATAAATATACATTCTATTGATCTTTAAACTTCTCA  800

seq1  ATCAAATGTATTTAGAAACTTTTTTATCATAAAATACTACTTAGATACGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGTATTTAGAAACTTTTTTATCATAAAATACTACTTAGATACGC  850

seq1  TCATTACTTATCAGGAAGGCTAAGGGAAATGACATATTTCAAGTACATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACTTATCAGGAAGGCTAAGGGAAATGACATATTTCAAGTACATGT  900

seq1  TTTGAGCTGGACAGCAGGTAGAAATTTGACTTCATGTCATTCATCACAAG  950
      |||||||||||||||| |||||||||||||||||||||| ||||||| ||
seq2  TTTGAGCTGGACAGCA-GTAGAAATTTGACTTCATGTCA-TCATCAC-AG  947

seq1  TCCACAGTAAGTTTGTTTTGCGACTGTGATGTTCCTCCTATATTCCTTTG  1000
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  TCCACAGTAAGTTTGTTTTGCGACTGTGATGTT-CTCCTATA-TCCTTTG  995

seq1  CTGTTGACTTTATGGCCTTTCTGCTTCAGAAGCACTTC-GTTGATTATAT  1049
      ||| |||||||||||||||||||| |||| |||||||| ||||| |  ||
seq2  CTGGTGACTTTATGGCCTTTCTGC-TCAG-AGCACTTCGGTTGAATTAAT  1043

seq1  TGTAGAGAAATGAAC-AGGATAAGGGGAAGTACCCCTTTCTCTGATACTC  1098
      |||| ||||   ||| ||||||||||  ||||||| |||| |||  ||||
seq2  TGTAAAGAATGAAACAAGGATAAGGG--AGTACCCTTTTC-CTGGAACTC  1090

seq1  CA-TACAGAATAGGACAGTACAGATATTAACCTTCCCTGG-CTATCACAT  1146
       | |||||||  |||| ||||||| ||||  ||||| ||| |||| ||| 
seq2  AATTACAGAA-GGGACGGTACAGA-ATTA--CTTCCTTGGCCTAT-ACAA  1135

seq1  GT-TGTCCACATGTCCTATAAAAGCTC-TCGG  1176
      || ||| |||||||||||| ||||||| ||||
seq2  GTGTGTTCACATGTCCTAT-AAAGCTCGTCGG  1166