BAC Information

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BAC

Clone NameB6Ng01-122H02
Chromosome13 (Build37)16 (Build37)
Map Location 76,154,838 - 76,155,96456,774,935 - 56,775,071
singlet/doubletsingletsinglet
Overlap geneRfesd
Upstream genePcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9
Downstream geneLOC100043008, Gpr150, Arsk, AK129128, Gm276, Mctp1, LOC666603, EG666607
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122H02.bB6Ng01-122H02.g
ACCDH925863DH925864
length1,108945
definitionDH925863|Mus musculus domesticus DNA, BAC clone: B6Ng01-122H02, 5' end.DH925864|Mus musculus domesticus DNA, BAC clone: B6Ng01-122H02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(76,154,838 - 76,155,964)(56,774,935 - 56,775,071)
sequence
gaattccatataaaactatttgttttagataagtggatggccccgacagt
tttaaacacctttctaatgtagataattcattcaagtataaagtcactga
agacaaaagacatgaaattaaaggtactcacactcatgtgtcactcctct
tgagcaatgactcagggactcttagagtggggacctggcccacaaattat
cacagtgcttatctccagggtgacaccctggcttttaggctcagggaagg
gaaatgctttagtcagtagcagtttgatgataataaatacatttgactag
ctacatttcactaccgcttggacactttgcgtgtaaatgttcattactcc
tcacaaaattaaatatctgtaagctcatatgttgcttggtgtaactttcg
tgtcactagcagccagcgatttataaaagaaaagaaacaaaaaacaaaaa
acatgtggcctgaaagaaaatcatcttgaaagtcacaaaaaccgttcggc
aaaaacgtatagagagttttatattcgcagtgcacacatgtatcggaaaa
gatggttctgaatgtttatgtaggaatgctaatgtacaagattgtcttca
caaatatctaaagtaaaacacttgcccaatttaatgaagccgtgcagctg
agcgaattactgccaatgtctggtattaaagatgacaaggcgtttcacca
gcgtctgaatcccggactgcttcctaagaggcctgtatcatagggtgtgc
agaggacaaccacgttaaggcacctctactctatacagctgggtgcaacc
gcaggaagcgcagcaaggctggtagccacccccatggctttagcagttct
caaaccagttttatttgctaagaagacaggccgcagctgctagattgagc
ggcgctagggacagcacggcaaccagcagtcgtcccgacggccatcccag
gagatatttggggtgcgtgggacgtcagagattcgctttcatagttatgg
cacagtgcgaaagcctatttaatgctgcagtcccgctgttggccactgtc
aaggcgaacagtcactgaggctctgcatgccagtcacgaaggtcaaacgc
tcctgctc
gaattcctttggtgatgaacaacagtatggaagtgtaagctgaataaacc
ctttcctccccaacttacttcttggtcatgatgtctgtgcaggaatagaa
accctgactaagacaaatggctactacatagtgagttcaaggctagtgtg
gactatatagaaagacactgtctcagaggcaaaaaggtcttatataaata
taaaacgagaagtctcatgagtttgaaggaaaaataagtcttacatattc
atcattcaacataataaagtaaatgccacaaattaactaggatatttgac
acactggatagataatacatataggatttctcacaattgataattaatta
tacctcgatgttttcagtcgcgaggtataacactcctaagttggtccacg
cagcagcattctaaaagacatataaaaacaaacaggtctcattcagggac
gcttctttttacagtaggcagcagttaatacagactcacaactagtgaaa
ctggtaaaaaaaaaaaaaaaatatatatatatatatatatagtggctgtt
cagtgttcagccctaaatagggcatctacagcacaccctccaaggctcag
gaaatacatgtcagaggacagcagaaagatcgtaagagttggaggatggg
aggggatgctcaggcttctgcacaggacaacgctggctgttgcactcatg
aagtcacagcagctacggttccctgcacaagatctgtacaagactgagca
catcagcatcctactgtgcagctgcgagggagctaactgctaggctaagg
agaacagaacggggaggccttttttctacagtggagtagctactgttagc
atgtcaacactccacaagtaacccccatccatgctcacacaagcaatcca
attaaactcagtagttcttttaaagaagaagagaagaggacagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_76154838_76155964
seq2: B6Ng01-122H02.b_45_1152

seq1  GAATTCCATATAAAACTATTTGTTTTAGATAAGTGGATGGCCCCGACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATAAAACTATTTGTTTTAGATAAGTGGATGGCCCCGACAGT  50

seq1  TTTAAACACCTTTCTAATGTAGATAATTCATTCAAGTATAAAGTCACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACACCTTTCTAATGTAGATAATTCATTCAAGTATAAAGTCACTGA  100

seq1  AGACAAAAGACATGAAATTAAAGGTACTCACACTCATGTGTCACTCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAGACATGAAATTAAAGGTACTCACACTCATGTGTCACTCCTCT  150

seq1  TGAGCAATGACTCAGGGACTCTTAGAGTGGGGACCTGGCCCACAAATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAATGACTCAGGGACTCTTAGAGTGGGGACCTGGCCCACAAATTAT  200

seq1  CACAGTGCTTATCTCCAGGGTGACACCCTGGCTTTTAGGCTCAGGGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCTTATCTCCAGGGTGACACCCTGGCTTTTAGGCTCAGGGAAGG  250

seq1  GAAATGCTTTAGTCAGTAGCAGTTTGATGATAATAAATACATTTGACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCTTTAGTCAGTAGCAGTTTGATGATAATAAATACATTTGACTAG  300

seq1  CTACATTTCACTACCGCTTGGACACTTTGCGTGTAAATGTTCATTACTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTCACTACCGCTTGGACACTTTGCGTGTAAATGTTCATTACTCC  350

seq1  TCACAAAATTAAATATCTGTAAGCTCATATGTTGCTTGGTGTAACTTTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAATTAAATATCTGTAAGCTCATATGTTGCTTGGTGTAACTTTCG  400

seq1  TGTCACTAGCAGCCAGCGATTTATAAAAGAAAAGAAACAAAAAACAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTAGCAGCCAGCGATTTATAAAAGAAAAGAAACAAAAAACAAAAA  450

seq1  ACATGTGGCCTGAAAGAAAATCATCTTGAAAGTCACAAAAACCGTTCGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGCCTGAAAGAAAATCATCTTGAAAGTCACAAAAACCGTTCGGC  500

seq1  AAAAACGTATAGAGAGTTTTATATTCGCAGTGCACACATGTATCGGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACGTATAGAGAGTTTTATATTCGCAGTGCACACATGTATCGGAAAA  550

seq1  GATGGTTCTGAATGTTTATGTAGGAATGCTAATGTACAAGATTGTCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTCTGAATGTTTATGTAGGAATGCTAATGTACAAGATTGTCTTCA  600

seq1  CAAATATCTAAAGTAAAACACTTGCCCAATTTAATGAAGCCGTGCAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATCTAAAGTAAAACACTTGCCCAATTTAATGAAGCCGTGCAGCTG  650

seq1  AGCGAATTACTGCCAATGTCTGGTATTAAAGATGACAAGGCGTTTCACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAATTACTGCCAATGTCTGGTATTAAAGATGACAAGGCGTTTCACCA  700

seq1  GCGTCTGAATCCCGGACTGCTTCCTAAGAGGCCTGTATCATAGGGTGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTGAATCCCGGACTGCTTCCTAAGAGGCCTGTATCATAGGGTGTGC  750

seq1  AGAGGACAACCACGTTAAGGCACCTCTACTCTATACAGCTGGGTGCAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACAACCACGTTAAGGCACCTCTACTCTATACAGCTGGGTGCAACC  800

seq1  GCAGGAAGCGCAGCAAGGCTGGTAGCCACCCCCATGGCTTTAGCAGTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAGCGCAGCAAGGCTGGTAGCCACCCCCATGGCTTTAGCAGTTCT  850

seq1  CAAACCAGTTTTATTTGCTAAGAAGACAGGCCGCAGCTGCTAGATTGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGTTTTATTTGCTAAGAAGACAGGCCGCAGCTGCTAGATTGAGC  900

seq1  GGCGCTAGGGACAGCACGGCAACCAGCAGTCGTCCCGACGGCCATCCCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTAGGGACAGCACGGCAACCAGCAGTCGTCCCGACGGCCATCCCAG  950

seq1  GAGAATATTTGGGGTGCGTGGGACGTCAGAAGGATTCGCTTTCATAGTTT  1000
      ||| ||||||||||||||||||||||||||  ||||||||||||||| ||
seq2  GAG-ATATTTGGGGTGCGTGGGACGTCAGA--GATTCGCTTTCATAG-TT  996

seq1  ATGGCACAAGTGCGGAAAAGCCTATTTAAATGGCTGCAGGTCCCGGCTGT  1050
      ||||||| ||||||  |||||||||||||   |||||| ||||| |||||
seq2  ATGGCAC-AGTGCG--AAAGCCTATTTAA--TGCTGCA-GTCCC-GCTGT  1039

seq1  GGCCCAACTGTCAAGGCGAACAGTTCACTGAGGCTCTTGCCAATGCCAGT  1100
       | || ||||||||||||||||| |||||||||||| |||  ||||||||
seq2  TGGCC-ACTGTCAAGGCGAACAG-TCACTGAGGCTC-TGC--ATGCCAGT  1084

seq1  CCACGAGGGTCCAAACGCTCCCTGCTC  1127
       ||||| ||| |||||||| |||||||
seq2  -CACGAAGGT-CAAACGCT-CCTGCTC  1108

seq1: chr16_56774935_56775071
seq2: B6Ng01-122H02.g_77_394

seq1  GTGATGAACAGCAATGTGGAAATGTAAGCTGAATAAACCCTTTCCTCCAC  50
      |||||||||| || | ||||| |||||||||||||||||||||||||| |
seq2  GTGATGAACAACAGTATGGAAGTGTAAGCTGAATAAACCCTTTCCTCCCC  50

seq1  AACTTGCTTCTTGGTCATGATGTTTGGGCAGGAATAGAAACCCTGACTAA  100
      ||||| ||||||||||||||||| || |||||||||||||||||||||||
seq2  AACTTACTTCTTGGTCATGATGTCTGTGCAGGAATAGAAACCCTGACTAA  100

seq1  GACA----------ACATAATAAG---AAGTTTTAAT----AC-ATATAG  132
      ||||          ||||| | ||   |||   || |    || ||||||
seq2  GACAAATGGCTACTACATAGTGAGTTCAAG-GCTAGTGTGGACTATATAG  149

seq1  GATTT---------------------------------------------  137
       |                                                
seq2  AA---AGACACTGTCTCAGAGGCAAAAAGGTCTTATATAAATATAAAACG  196

seq1  --------------------------------------------------  137
                                                        
seq2  AGAAGTCTCATGAGTTTGAAGGAAAAATAAGTCTTACATATTCATCATTC  246

seq1  --------------------------------------------------  137
                                                        
seq2  AACATAATAAAGTAAATGCCACAAATTAACTAGGATATTTGACACACTGG  296

seq1  ----------------------  137
                            
seq2  ATAGATAATACATATAGGATTT  318