BAC Information

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BAC

Clone NameB6Ng01-122H24
Chromosome16 (Build37)
Map Location 89,224,005 - 89,276,206
singlet/doubletdoublet
Overlap geneEG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425
Upstream geneGrik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935
Downstream geneLOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122H24.bB6Ng01-122H24.g
ACCDH925907DH925908
length1,1161,099
definitionDH925907|Mus musculus domesticus DNA, BAC clone: B6Ng01-122H24, 5' end.DH925908|Mus musculus domesticus DNA, BAC clone: B6Ng01-122H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,275,067 - 89,276,206)(89,224,005 - 89,225,118)
sequence
gaattccagataccagcttgcatgtttctacctcattatgtaaggtggag
agcaaatgagaaaggtcgaagcccccacatgaaacccctcctacgggagt
acactgcacatgatcatacacacatacttgttcacatgaacacatagaag
acacacacacacacacacacacacacacacacacacgaacttaagaaata
tatacaaaagaataaaaaactttgaaatagaaaacttttcagagatccag
ctaaaaaaagttctgaagaacaaaaaacacagtataaaaaggtgtttcaa
acaaatgaaaatgagtatatcgtgaagattattaatgcagaaatatgagt
gtgttgtgataaacataactaaactctccagccaaaagaatataaacaga
tgctaaataagcagaggtttagaacaggtatttttcaaaggaatagatac
agttggacaactggacacaatagtgttctacttcactaacaccccagaga
tatgaatcaaaaacaagatgacatttcagtccacaactgttagatactta
atattgtagagaaaaagatcaatagaagagagcacccttctcaattgttg
atgggaatgaaacttggtgtagctatgagaaaagtagcatgtggcctgtt
ttcaaacacacagagaagtgagagataacctagaagtcgcactgcttctt
atacaatgagatgaaaatcagtgaatcttaaagaactatgtaccctacca
aggctattgttacaaccttaataatagtcatgctagaaatacaagaaaaa
gaacatctgtatttgaacactcgcaataattgtttccttctctctctaac
ttcctctccccttccatatttccctccccttttcttcccaatgtctgtct
cctaaaatatcttcctcattttaactcccctcacacattcccacaactac
ttccacatgcgtgaacaatcagtacaaaagcacagaacatgcaaattatt
tgtagagttattattactatttgatgatacacacatcatttaaacatggg
cagagttatatatatatatgtacagcgtatgatgaagaataacataaagc
atcatctagtctaaat
gaattcaaattctgatactgcaaagaacaggagaatggagtctctgtgtt
tgaatggtctattgaaacttcaaagccaacatcattaattcaaagtatta
aatttagtctcagatagattttcagaaaaagctgacacattgtttgccaa
aatatcacaagaatgatctctatatcatttaattatattcttctcctctg
aaaactcttgaactaggcagtcataatccacattgctcttagcaccacta
tcttccacactcctactaagtcagcctaataagcgactcttaaagcattc
acctgttttgctaatccaaagtctatcatctgtgaacatgctccattttt
ggatgaggggccagataccattaccatgggacaacgaagaagagcagcag
gagcagtgcagtgcagcctgccaatgcacagaagacaagctgcagctgtg
tgtactgcagagaacagagttagagaagggactaaagtgtatacaggagt
taagaaattgaaagtggtacctcaggatgcttctcaccatggtacctgag
gtaccatggtgaagagcaactaggatgatggcatcatttcatccaagcaa
aaagggaagacacatgacgcatatcacagatcacaatgttcaaacagagg
tagctgcagccaaggccgtggttacaggataaagaattgcttctgcctct
gcagagcatgctctaagtggagagaggaatagtcaagtattggacgaagc
aagagttccaacacaagttcaaatgaataccaaagtgcccagtttctatg
gccagttcatgaccatatatatggcaagctttaaagaaagtaataatatc
cctggcagtggaggaatgatttataataattttgatgaatatcagctacc
acctatctgttggatcttcagtaagaacacaggatccgtgatacatgtca
cattgatataataagaataatcacttcaccttaaaagtcaaaatatcaat
ttatcattaatagaaataagcacaaggcaagtagtggtaactgctctttc
aacactttaattctcaataaaattaatggtttggaaatgactaataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89275067_89276206
seq2: B6Ng01-122H24.b_50_1165 (reverse)

seq1  ATTTAGACTATGATGATGCTTTATGTTA-TCTTCATCATACGCTGTACAA  49
      |||||||||| ||||||||||||||||| |||||||||||||||||||  
seq2  ATTTAGACTA-GATGATGCTTTATGTTATTCTTCATCATACGCTGTAC--  47

seq1  TATTTATTTATTTATTTATTTAACTCTTGCCCAATGTTTTAAAATGATGT  99
               || ||| ||| |||||| ||||| ||||||  |||||||| 
seq2  ---------ATATATATATATAACTC-TGCCC-ATGTTT--AAATGATG-  83

seq1  TGTGTATCATCAAATAAGTAAATAAATAAACTCTACAAATTAATTTTTGC  149
      ||||||||||||||| ||| |||||   |||||||||||| |   |||||
seq2  TGTGTATCATCAAAT-AGT-AATAA--TAACTCTACAAATAA---TTTGC  126

seq1  ATGTTCTGTGCTTTTGTACTTGATTGTTCACGCATGTGGAAGTAGTTGTG  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGTTCTGTGCTTTTGTAC-TGATTGTTCACGCATGTGGAAGTAGTTGTG  175

seq1  GGAATGTGTGAGGGGAGTTAAAATGAGGAAGATATTTTAGGAGACAGACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTGTGAGGGGAGTTAAAATGAGGAAGATATTTTAGGAGACAGACA  225

seq1  TTGGGAAGAAAAGGGGAGGGAAATATGGAAGGGGAGAGGAAGTTAGAGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGAAAAGGGGAGGGAAATATGGAAGGGGAGAGGAAGTTAGAGAG  275

seq1  AGAAGGAAACAATTATTGCGAGTGTTCAAATACAGATGTTCTTTTTCTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAACAATTATTGCGAGTGTTCAAATACAGATGTTCTTTTTCTTG  325

seq1  TATTTCTAGCATGACTATTATTAAGGTTGTAACAATAGCCTTGGTAGGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAGCATGACTATTATTAAGGTTGTAACAATAGCCTTGGTAGGGT  375

seq1  ACATAGTTCTTTAAGATTCACTGATTTTCATCTCATTGTATAAGAAGCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTTCTTTAAGATTCACTGATTTTCATCTCATTGTATAAGAAGCAG  425

seq1  TGCGACTTCTAGGTTATCTCTCACTTCTCTGTGTGTTTGAAAACAGGCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGACTTCTAGGTTATCTCTCACTTCTCTGTGTGTTTGAAAACAGGCCA  475

seq1  CATGCTACTTTTCTCATAGCTACACCAAGTTTCATTCCCATCAACAATTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTACTTTTCTCATAGCTACACCAAGTTTCATTCCCATCAACAATTG  525

seq1  AGAAGGGTGCTCTCTTCTATTGATCTTTTTCTCTACAATATTAAGTATCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGTGCTCTCTTCTATTGATCTTTTTCTCTACAATATTAAGTATCT  575

seq1  AACAGTTGTGGACTGAAATGTCATCTTGTTTTTGATTCATATCTCTGGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTGTGGACTGAAATGTCATCTTGTTTTTGATTCATATCTCTGGGG  625

seq1  TGTTAGTGAAGTAGAACACTATTGTGTCCAGTTGTCCAACTGTATCTATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTGAAGTAGAACACTATTGTGTCCAGTTGTCCAACTGTATCTATT  675

seq1  CCTTTGAAAAATACCTGTTCTAAACCTCTGCTTATTTAGCATCTGTTTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAAAAATACCTGTTCTAAACCTCTGCTTATTTAGCATCTGTTTAT  725

seq1  ATTCTTTTGGCTGGAGAGTTTAGTTATGTTTATCACAACACACTCATATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTGGCTGGAGAGTTTAGTTATGTTTATCACAACACACTCATATT  775

seq1  TCTGCATTAATAATCTTCACGATATACTCATTTTCATTTGTTTGAAACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTAATAATCTTCACGATATACTCATTTTCATTTGTTTGAAACAC  825

seq1  CTTTTTATACTGTGTTTTTTGTTCTTCAGAACTTTTTTTAGCTGGATCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATACTGTGTTTTTTGTTCTTCAGAACTTTTTTTAGCTGGATCTC  875

seq1  TGAAAAGTTTTCTATTTCAAAGTTTTTTATTCTTTTGTATATATTTCTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTTTTCTATTTCAAAGTTTTTTATTCTTTTGTATATATTTCTTA  925

seq1  AGTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTCTATGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTCTATGT  975

seq1  GTTCATGTGAACAAGTATGTGTGTATGATCATGTGCAGTGTACTCCCGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGTGAACAAGTATGTGTGTATGATCATGTGCAGTGTACTCCCGTA  1025

seq1  GGAGGGGTTTCATGTGGGGGCTTCGACCTTTCTCATTTGCTCTCCACCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGTTTCATGTGGGGGCTTCGACCTTTCTCATTTGCTCTCCACCTT  1075

seq1  ACATAATGAGGTAGAAACATGCAAGCTGGTATCTGGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATGAGGTAGAAACATGCAAGCTGGTATCTGGAATTC  1116

seq1: chr16_89224005_89225118
seq2: B6Ng01-122H24.g_65_1163

seq1  GAATTCAAATTCTGATACTGCAAAGAACAGGAGAATGGAGTCTCTGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTCTGATACTGCAAAGAACAGGAGAATGGAGTCTCTGTGTT  50

seq1  TGAATGGTCTATTGAAACTTCAAAGCCAACATCATTAATTCAAAGTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGTCTATTGAAACTTCAAAGCCAACATCATTAATTCAAAGTATTA  100

seq1  AATTTAGTCTCAGATAGATTTTCAGAAAAAGCTGACACATTGTTTGCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGTCTCAGATAGATTTTCAGAAAAAGCTGACACATTGTTTGCCAA  150

seq1  AATATCACAAGAATGATCTCTATATCATTTAATTATATTCTTCTCCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCACAAGAATGATCTCTATATCATTTAATTATATTCTTCTCCTCTG  200

seq1  AAAACTCTTGAACTAGGCAGTCATAATCCACATTGCTCTTAGCACCACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTTGAACTAGGCAGTCATAATCCACATTGCTCTTAGCACCACTA  250

seq1  TCTTCCACACTCCTACTAAGTCAGCCTAATAAGCGACTCTTAAAGCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCACACTCCTACTAAGTCAGCCTAATAAGCGACTCTTAAAGCATTC  300

seq1  ACCTGTTTTGCTAATCCAAAGTCTATCATCTGTGAACATGCTCCATTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTTTGCTAATCCAAAGTCTATCATCTGTGAACATGCTCCATTTTT  350

seq1  GGATGAGGGGCCAGATACCATTACCATGGGACAACGAAGAAGAGCAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGGGGCCAGATACCATTACCATGGGACAACGAAGAAGAGCAGCAG  400

seq1  GAGCAGTGCAGTGCAGCCTGCCAATGCACAGAAGACAAGCTGCAGCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTGCAGTGCAGCCTGCCAATGCACAGAAGACAAGCTGCAGCTGTG  450

seq1  TGTACTGCAGAGAACAGAGTTAGAGAAGGGACTAAAGTGTATACAGGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGCAGAGAACAGAGTTAGAGAAGGGACTAAAGTGTATACAGGAGT  500

seq1  TAAGAAATTGAAAGTGGTACCTCAGGATGCTTCTCACCATGGTACCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATTGAAAGTGGTACCTCAGGATGCTTCTCACCATGGTACCTGAG  550

seq1  GTACCATGGTGAAGAGCAACTAGGATGATGGCATCATTTCATCCAAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATGGTGAAGAGCAACTAGGATGATGGCATCATTTCATCCAAGCAA  600

seq1  AAAGGGAAGACACATGACGCATATCACAGATCACAATGTTCAAACAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAGACACATGACGCATATCACAGATCACAATGTTCAAACAGAGG  650

seq1  TAGCTGCAGCCAAGGCCGTGGTTACAGGATAAAGAATTGCTTCTGCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCAGCCAAGGCCGTGGTTACAGGATAAAGAATTGCTTCTGCCTCT  700

seq1  GCAGAGCATGCTCTAAGTGGAGAGAGGAATAGTCAAGTATTGGACGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCATGCTCTAAGTGGAGAGAGGAATAGTCAAGTATTGGACGAAGC  750

seq1  AAGAGTTCCAACACAAGTTCAAATGAATACCAAAGTGCCCAGTTTCTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTCCAACACAAGTTCAAATGAATACCAAAGTGCCCAGTTTCTATG  800

seq1  GCCAGTTCATGACCATATATATGGCAAGCTTTAAAGAAAGTAATAATATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTCATGACCATATATATGGCAAGCTTTAAAGAAAGTAATAATATC  850

seq1  CCTGGCAGTGGAGGAATGATTTATAATAATTTTGATGAATATCAGCTACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAGTGGAGGAATGATTTATAATAATTTTGATGAATATCAGCTACC  900

seq1  ACCTATCTGTTGGATCTTCAGTTAAAGAACACAGGATCCGTTGATACATG  950
      ||||||||||||||||||||||  |||||||||||||||| |||||||||
seq2  ACCTATCTGTTGGATCTTCAGT--AAGAACACAGGATCCG-TGATACATG  947

seq1  TCACATTGAATTATAATAAGAATTAATCACTTCACCTTAAAAAGTCAAAA  1000
      |||||||||  ||||||||||| ||||||||||||||| |||||||||||
seq2  TCACATTGA--TATAATAAGAA-TAATCACTTCACCTT-AAAAGTCAAAA  993

seq1  TATCAAATGTATTCAATTTAATAGAAATAAAGCACAAAGGCAAGTTAGTG  1050
      |||| ||| || |||  ||||||||||| |||||| |||||||| |||||
seq2  TATC-AATTTA-TCA--TTAATAGAAAT-AAGCAC-AAGGCAAG-TAGTG  1036

seq1  GTAAACTGCTCTTTCAAACAACTTTAAATCTCAATAAA--TTATTGTTTG  1098
      || ||||||||||||||   ||||||| ||||||||||  | || |||||
seq2  GT-AACTGCTCTTTCAA--CACTTTAATTCTCAATAAAATTAATGGTTTG  1083

seq1  AAAATGACTAATAAAA  1114
       |||||||||||||||
seq2  GAAATGACTAATAAAA  1099