BAC Information

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BAC

Clone NameB6Ng01-122J19
Chromosome16 (Build37)
Map Location 27,497,267 - 27,601,547
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043057, Il1rap, Gm606, Ostn, Uts2d, Ccdc50
Downstream geneFgf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122J19.bB6Ng01-122J19.g
ACCDH925992DH925993
length1,1651,051
definitionDH925992|Mus musculus domesticus DNA, BAC clone: B6Ng01-122J19, 5' end.DH925993|Mus musculus domesticus DNA, BAC clone: B6Ng01-122J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,497,267 - 27,498,443)(27,600,482 - 27,601,547)
sequence
gaattccttgaactctgcttttgtctctttaactgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgcattcttgtgcatacacttgattatgtgtgattgt
agctagaatgtgggtgatctgagaggtaatatcagcaactaagattggat
taaataaacccatgtttctttttttcttaagatactcaagattacttaga
aaattgctgtcaactcaacagttatagtttgtaaatttattttcattaag
cgatttcatgcattgtggaaagacacagatgtgatcatctatttgcaatt
gaattgatgctataatgaccttcctaatagatttacttaggaaacattaa
gcaatacaagtagaatttagctaggggagtgctgcccccaaaagtcccca
aagataactactatgctaatgaactccatttcacatcagggaaacttagg
atgttaggcttctaatgtttgttcactaagacagacctccaattaggctc
cattctcgtaacaaaataagaagaccctgacttaaaactggccattaggt
tcctattcatatcaaagaacatatctaaggaacagctgaagtgggcaaca
gggtcataaccacgattaagtactgctctaccattaagtcccttgtgtgc
ttattagaaaaagaaccctataattctatcaggtaggcaagttgaatctg
gctaatttctactatttgaaaaaaaaaaaaaaagcactggtgtacttaag
aaattatgtggtgatatatttgctatataaattttccatcttcccaaacg
atcagacttacagtctcttgtctttttaaaaattgctcaaagaataatct
ggggctaggacctgaaagagatttaaggatgaccgtgtgtaggtactaca
caagcctaaactgtttataagttcacaaatcttcaatccatacctggctc
ttccctgagcactaggtagaactagagtgagctatttaaagatggagtga
tttttcactgggaaagcatttactataattaaatgagtgggagtactctt
agaataaaaggagaagataaattctcttctacaaaaaacaaaaaagcata
ctggggttgaaattaattttttcagttaaggattgccttcaatccaatcc
aatctgaggaaagac
gaattcttcccccaaaaaatgtgatatgcataattttgtttaatcttgtt
aaaaattttgagaacaagattataaatttgaggagatataaacttagaaa
atattaaggtgggaaaggcaaatggcttggcaacaataaaatcccctgat
actcttgggacttctagattatctttccaattaactattgtgaagatgtt
atttctgagagaaactaagccattatggagttcactgaggagtcttctac
agggaagaaagagggggcatcaaatgatgaggactggagcgggggaggga
attgaaaggccagatggatggcgagtgtgagattatgacacagaccactg
ggcaattgggtattctcctctgggctacttcaattttgaagaaggaaata
aagtaaattgcatttcattattatttatttatttgctcaaactaggttaa
gggaagacaaatgaaaagtgctgtagaacataaaaccaagtgccataaaa
agcttttaaaggagtggaggttgtaatgtctttcctttgaaatatagata
taaaagttgccatctttgtaggtttttcaatccacccacctacacctatt
cagaaacatctgttttattataaaatggaaactgaaaaaaaattaaaaga
ctggctaataataacatatggtgagggggaacttgtttatttcatcctca
tttttctgggctaaaaaaggtaatttttagaatatgtaattagtatatag
gctcaggtatgcatatatgagtctctcctgttctgcttcaagctcctgat
aactttgaatatgctgctctggttaacatatcagtgttttatataaccta
tagatgtgtttagtctggtattttattccagatttaactcattgcatttt
tacatatgtatggtactcattctttctgatctactaggctgaattatttc
ttttaggtgtacagtaaccataacatcaaagtactgtcatttagatcaac
atgatctaggaacagtatcagctaagtagcagtctgacttaagagcaaac
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_27497267_27498443
seq2: B6Ng01-122J19.b_49_1213

seq1  GAATTCCTTGAACTCTGCTTTTGTCTCTTTAACTGTGTGTGTGTGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGAACTCTGCTTTTGTCTCTTTAACTGTGTGTGTGTGTGTGT  50

seq1  GTGTGTGTGTGTGTGCATTCTTGTGCATACACTTGATTATGTGTGATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGCATTCTTGTGCATACACTTGATTATGTGTGATTGT  100

seq1  AGCTAGAATGTGGGTGATCTGAGAGGTAATATCAGCAACTAAGATTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAATGTGGGTGATCTGAGAGGTAATATCAGCAACTAAGATTGGAT  150

seq1  TAAATAAACCCATGTTTCTTTTTTTCTTAAGATACTCAAGATTACTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAACCCATGTTTCTTTTTTTCTTAAGATACTCAAGATTACTTAGA  200

seq1  AAATTGCTGTCAACTCAACAGTTATAGTTTGTAAATTTATTTTCATTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCTGTCAACTCAACAGTTATAGTTTGTAAATTTATTTTCATTAAG  250

seq1  CGATTTCATGCATTGTGGAAAGACACAGATGTGATCATCTATTTGCAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTCATGCATTGTGGAAAGACACAGATGTGATCATCTATTTGCAATT  300

seq1  GAATTGATGCTATAATGACCTTCCTAATAGATTTACTTAGGAAACATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGATGCTATAATGACCTTCCTAATAGATTTACTTAGGAAACATTAA  350

seq1  GCAATACAAGTAGAATTTAGCTAGGGGAGTGCTGCCCCCAAAAGTCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACAAGTAGAATTTAGCTAGGGGAGTGCTGCCCCCAAAAGTCCCCA  400

seq1  AAGATAACTACTATGCTAATGAACTCCATTTCACATCAGGGAAACTTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAACTACTATGCTAATGAACTCCATTTCACATCAGGGAAACTTAGG  450

seq1  ATGTTAGGCTTCTAATGTTTGTTCACTAAGACAGACCTCCAATTAGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGGCTTCTAATGTTTGTTCACTAAGACAGACCTCCAATTAGGCTC  500

seq1  CATTCTCGTAACAAAATAAGAAGACCCTGACTTAAAACTGGCCATTAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCGTAACAAAATAAGAAGACCCTGACTTAAAACTGGCCATTAGGT  550

seq1  TCCTATTCATATCAAAGAACATATCTAAGGAACAGCTGAAGTGGGCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTCATATCAAAGAACATATCTAAGGAACAGCTGAAGTGGGCAACA  600

seq1  GGGTCATAACCACGATTAAGTACTGCTCTACCATTAAGTCCCTTGTGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATAACCACGATTAAGTACTGCTCTACCATTAAGTCCCTTGTGTGC  650

seq1  TTATTAGAAAAAGAACCCTATAATTCTATCAGGTAGGCAAGTTGAATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGAAAAAGAACCCTATAATTCTATCAGGTAGGCAAGTTGAATCTG  700

seq1  GCTAATTTCTACTATTTG-AAAAAAAAAAAAAAGCACTGGTGTACTTAAG  749
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCTAATTTCTACTATTTGAAAAAAAAAAAAAAAGCACTGGTGTACTTAAG  750

seq1  AAATTATGTGGTGATATATTTGCTATATAAATTTTCCATCTTCCCAAACG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGTGGTGATATATTTGCTATATAAATTTTCCATCTTCCCAAACG  800

seq1  ATCAGACTTACAGTCTCTTGTCTTTTTAAAAATTGCTCAAAGAATAATCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACTTACAGTCTCTTGTCTTTTTAAAAATTGCTCAAAGAATAATCT  850

seq1  GGGGCTAGGACCTGAAAGAGATTTAAGGATGACCGTGTGTAGGTACTACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTAGGACCTGAAAGAGATTTAAGGATGACCGTGTGTAGGTACTACA  900

seq1  CAAGCCTAAACTGTTTATAAGTTCACAAAATCTTCAATCCATACCTGGCT  949
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAAGCCTAAACTGTTTATAAGTTCAC-AAATCTTCAATCCATACCTGGCT  949

seq1  CTTCCCTGAGCACTAGGTAGAACTAGAAGTGAGCTATATCAAAGAATGGA  999
      |||||||||||||||||||||||||| |||||||||| | |||| |||||
seq2  CTTCCCTGAGCACTAGGTAGAACTAG-AGTGAGCTAT-TTAAAG-ATGGA  996

seq1  GTGATTTTTCACTGGGAAAGCATTTTACTATTAATTAAATGAGTGGGAAG  1049
      |||||||||||||||||||||| ||||||| |||||||||||||||||  
seq2  GTGATTTTTCACTGGGAAAGCA-TTTACTA-TAATTAAATGAGTGGGA--  1042

seq1  TTACTACTTTAGATAAAAGGGAGAGATAAATTCTCTTCTACAAAAAAAAC  1099
       |||| |||   ||||||||   ||||||||||||||||||  |||||||
seq2  GTACT-CTTAGAATAAAAGGAGAAGATAAATTCTCTTCTAC--AAAAAAC  1089

seq1  AAAAAAGCATACTGGGTTTAGAGATT-ATTTTTTCAGTTAGGGA-TGCCT  1147
      |||||||||||||||| || || ||| ||||||||||||| ||| |||||
seq2  AAAAAAGCATACTGGGGTT-GAAATTAATTTTTTCAGTTAAGGATTGCCT  1138

seq1  TCAAATGCTAATCATATCTGAGGAAGAGAC  1177
      ||||   | ||||  |||||||||| ||||
seq2  TCAA--TCCAATCCAATCTGAGGAA-AGAC  1165

seq1: chr16_27600482_27601547
seq2: B6Ng01-122J19.g_66_1116 (reverse)

seq1  CGTTTGCTTCTTTAGTCAGACTGCTTACCTGAGCTGATACTGTTTCCTAG  50
      ||||||| |||| ||||||||||||   || ||||||||||| |||||||
seq2  CGTTTGC-TCTTAAGTCAGACTGCT--ACTTAGCTGATACTG-TTCCTAG  46

seq1  ATTCATTGTTGATCTAAATGACAGTTACTTTGGATTGTTATGGTTACTGT  100
      | ||| |||||||||||||||||| |||||||   |||||||||||||||
seq2  A-TCA-TGTTGATCTAAATGACAG-TACTTTG--ATGTTATGGTTACTGT  91

seq1  ACACCTAAAAGAAATAATTCAGCCTAGTTAGATTCAGAAAGAATGAGTTA  150
      ||||||||||||||||||||||||||| |||| |||||||||||||| ||
seq2  ACACCTAAAAGAAATAATTCAGCCTAG-TAGA-TCAGAAAGAATGAG-TA  138

seq1  CCATACATATGTAAAAATGCAATGAGTTAAAATCTGGAATAAAATAACCA  200
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  CCATACATATGTAAAAATGCAATGAGTT-AAATCTGGAATAAAAT-ACCA  186

seq1  GACTAAACACATCTATAGGTTATATAAAAACACTGATATGTTAACCAGAG  250
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GACTAAACACATCTATAGGTTATAT-AAAACACTGATATGTTAACCAGAG  235

seq1  CAGCATATTCAAAGTTATCAGGAGCTTGAAGCAGAACAGGAGAGACTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATATTCAAAGTTATCAGGAGCTTGAAGCAGAACAGGAGAGACTCAT  285

seq1  ATATGCATACCTGAGCCTATATACTAATTACATATTCTAAAAATTACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATACCTGAGCCTATATACTAATTACATATTCTAAAAATTACCTT  335

seq1  TTTTAGCCCAGAAAAATGAGGATGAAATAAACAAGTTCCCCCTCACCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCCCAGAAAAATGAGGATGAAATAAACAAGTTCCCCCTCACCATA  385

seq1  TGTTATTATTAGCCAGTCTTTTAATTTTTTTTCAGTTTCCATTTTATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTATTAGCCAGTCTTTTAATTTTTTTTCAGTTTCCATTTTATAAT  435

seq1  AAAACAGATGTTTCTGAATAGGTGTAGGTGGGTGGATTGAAAAACCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGATGTTTCTGAATAGGTGTAGGTGGGTGGATTGAAAAACCTACA  485

seq1  AAGATGGCAACTTTTATATCTATATTTCAAAGGAAAGACATTACAACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCAACTTTTATATCTATATTTCAAAGGAAAGACATTACAACCTC  535

seq1  CACTCCTTTAAAAGCTTTTTATGGCACTTGGTTTTATGTTCTACAGCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTTTAAAAGCTTTTTATGGCACTTGGTTTTATGTTCTACAGCACT  585

seq1  TTTCATTTGTCTTCCCTTAACCTAGTTTGAGCAAATAAATAAATAATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTGTCTTCCCTTAACCTAGTTTGAGCAAATAAATAAATAATAAT  635

seq1  GAAATGCAATTTACTTTATTTCCTTCTTCAAAATTGAAGTAGCCCAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCAATTTACTTTATTTCCTTCTTCAAAATTGAAGTAGCCCAGAGG  685

seq1  AGAATACCCAATTGCCCAGTGGTCTGTGTCATAATCTCACACTCGCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACCCAATTGCCCAGTGGTCTGTGTCATAATCTCACACTCGCCATC  735

seq1  CATCTGGCCTTTCAATTCCCTCCCCCGCTCCAGTCCTCATCATTTGATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGCCTTTCAATTCCCTCCCCCGCTCCAGTCCTCATCATTTGATGC  785

seq1  CCCCTCTTTCTTCCCTGTAGAAGACTCCTCAGTGAACTCCATAATGGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTTTCTTCCCTGTAGAAGACTCCTCAGTGAACTCCATAATGGCTT  835

seq1  AGTTTCTCTCAGAAATAACATCTTCACAATAGTTAATTGGAAAGATAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCTCAGAAATAACATCTTCACAATAGTTAATTGGAAAGATAATC  885

seq1  TAGAAGTCCCAAGAGTATCAGGGGATTTTATTGTTGCCAAGCCATTTGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTCCCAAGAGTATCAGGGGATTTTATTGTTGCCAAGCCATTTGCC  935

seq1  TTTCCCACCTTAATATTTTCTAAGTTTATATCTCCTCAAATTTATAATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACCTTAATATTTTCTAAGTTTATATCTCCTCAAATTTATAATCT  985

seq1  TGTTCTCAAAATTTTTAACAAGATTAAACAAAATTATGCATATCACATTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCAAAATTTTTAACAAGATTAAACAAAATTATGCATATCACATTT  1035

seq1  TTTGGGGGAAGAATTC  1066
      ||||||||||||||||
seq2  TTTGGGGGAAGAATTC  1051