BAC Information

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BAC

Clone NameB6Ng01-123E23
Chromosome16 (Build37)
Map Location 30,980,122 - 31,142,247
singlet/doubletdoublet
Overlap geneAI480653, Centb2
Upstream geneLOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122
Downstream genePpp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123E23.bB6Ng01-123E23.g
ACCDH926509DH926510
length1,176460
definitionDH926509|Mus musculus domesticus DNA, BAC clone: B6Ng01-123E23, 5' end.DH926510|Mus musculus domesticus DNA, BAC clone: B6Ng01-123E23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,980,122 - 30,981,314)(31,141,782 - 31,142,247)
sequence
gaattctccaaaatacacactcaatttaaagtagaagtgaaatggcctga
cgctgcttcctgaggggaaatgtgtaaatatggctactatttacccgcct
acttgcgtagtttttgttcaaacagagcgtgcctgctgcatacgcagaga
aactgttgagactggctggagataccctcggaactgatatcttgcccgct
gtactcggcactacagttgctgcgtatgtgctgtgcaaatgcctcggtgc
cgagactaatccataatcagtaccagctcagccaatgtgagcgtggagtc
attgtgtcttaaagccgacaagaccatttctcactgagcagaggatggca
gcaaggctcaaaggtatctaggtacagcctggcaaaagccttgtgtgatc
cgtggaacactgggtcaacacgggctgaggctaactggatgccccagact
cctggaccatcagcccacatcaacccacactcctgagcaagacagaggca
gtccatgacgcccacccacttgccaggaacatgcacacatgaacacaggc
atgcacctctcggctccattaagcagagcatgagttttggagtctgatct
aacatcctggaaaagggactggtcccttttgagccttgcttcctgtatga
tgggaacacatctgggggttgctgagaaagagctctcaggtgccctcacg
cagggtctggccaaagttggttcttggtccatgggacttcctgatatttt
ctcttgccatagtaagggtagaatcttcccgagagaacctctgtctgact
agacacacaggatctaaacagaggtgaatttacagctggggctctgacaa
ccccacttctttctccacttctgacaagtctgtaagaagtcgatgtaatt
tctcctggaatagctggtctgctaagggacattacacttgctatgtgctg
agacttgttcagagttcttacacatttaatttcaatttttctacagaggg
ttatcatcctgactcctacctgaccgatgtggaaactgagtacaagacag
cctgttcaagctcagcattacgttgcattggagaaatgattcaggcagct
gtggagcccagcaactcatgtcctaccccagcgaatgctggttgtgaagc
ctctttctctctcctctcttctctct
aattcagccattgtttctggtcccaagtcttcccagtggaaactcccggc
tgggccaggcagagctgctgctgttcttagctggcgtggggaaagaggag
aaaggggtttgcgttgctgtgggttggcttccaaagtctgaagaggaatt
gaaattgtttgcttttctgtagtgaagaaagcaagttatttttgaggctc
gtagaattggctctaaactggcttcaatttcatatatcactttcatggtc
ttcagtaagaaatgaggtgtcattgaattgggtggggtgttgtcaagaca
acgtggtgtttacatcccattttctttctaacattcaaccttatgtttta
ctttctagattctgtttgaccaaacccagagatcaattaaggcccagctt
cagaactttgtcaaagagtaagtcttccatagttaagagggtggggtgaa
tggtgggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_30980122_30981314
seq2: B6Ng01-123E23.b_43_1218

seq1  GAATTCTCCAAAATACACACTCAATTTAAAGTAGAAGTGAAATGGCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAAAATACACACTCAATTTAAAGTAGAAGTGAAATGGCCTGA  50

seq1  CGCTGCTTCCTGAGGGGAAATGTGTAAATATGGCTACTATTTACCCGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCTTCCTGAGGGGAAATGTGTAAATATGGCTACTATTTACCCGCCT  100

seq1  ACTTGCGTAGTTTTTGTTCAAACAGAGCGTGCCTGCTGCATACGCAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCGTAGTTTTTGTTCAAACAGAGCGTGCCTGCTGCATACGCAGAGA  150

seq1  AACTGTTGAGACTGGCTGGAGATACCCTCGGAACTGATATCTTGCCCGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTGAGACTGGCTGGAGATACCCTCGGAACTGATATCTTGCCCGCT  200

seq1  GTACTCGGCACTACAGTTGCTGCGTATGTGCTGTGCAAATGCCTCGGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCGGCACTACAGTTGCTGCGTATGTGCTGTGCAAATGCCTCGGTGC  250

seq1  CGAGACTAATCCATAATCAGTACCAGCTCAGCCAATGTGAGCGTGGAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACTAATCCATAATCAGTACCAGCTCAGCCAATGTGAGCGTGGAGTC  300

seq1  ATTGTGTCTTAAAGCCGACAAGACCATTTCTCACTGAGCAGAGGATGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTCTTAAAGCCGACAAGACCATTTCTCACTGAGCAGAGGATGGCA  350

seq1  GCAAGGCTCAAAGGTATCTAGGTACAGCCTGGCAAAAGCCTTGTGTGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCTCAAAGGTATCTAGGTACAGCCTGGCAAAAGCCTTGTGTGATC  400

seq1  CGTGGAACACTGGGTCAACACGGGCTGAGGCTAACTGGATGCCCCAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAACACTGGGTCAACACGGGCTGAGGCTAACTGGATGCCCCAGACT  450

seq1  CCTGGACCATCAGCCCACATCAACCCACACTCCTGAGCAAGACAGAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACCATCAGCCCACATCAACCCACACTCCTGAGCAAGACAGAGGCA  500

seq1  GTCCATGACGCCCACCCACTTGCCAGGAACATGCACACATGAACACAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGACGCCCACCCACTTGCCAGGAACATGCACACATGAACACAGGC  550

seq1  ATGCACCTCTCGGCTCCATTAAGCAGAGCATGAGTTTTGGAGTCTGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCTCTCGGCTCCATTAAGCAGAGCATGAGTTTTGGAGTCTGATCT  600

seq1  AACATCCTGGAAAAGGGACTGGTCCCTTTTGAGCCTTGCTTCCTGTATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCTGGAAAAGGGACTGGTCCCTTTTGAGCCTTGCTTCCTGTATGA  650

seq1  TGGGAACACATCTGGGGGTTGCTGAGAAAGAGCTCTCAGGTGCCCTCACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACACATCTGGGGGTTGCTGAGAAAGAGCTCTCAGGTGCCCTCACG  700

seq1  CAGGGTCTGGCCAAAGTTGGTTCTTGGTCCATGGGACTTCCTGATATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTGGCCAAAGTTGGTTCTTGGTCCATGGGACTTCCTGATATTTT  750

seq1  CTCTTGCCATAGTAAGGGTAGAATCTTCCCGAGAGAACCTCTGTCTGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCATAGTAAGGGTAGAATCTTCCCGAGAGAACCTCTGTCTGACT  800

seq1  AGACACACAGGATCTAAACAGAGGTGAATTTACAGCTGGGGCTCTGACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACAGGATCTAAACAGAGGTGAATTTACAGCTGGGGCTCTGACAA  850

seq1  CCCCACTTCTTTCTCCACTTCTGACAAGTCTGTAAGAAGTCGATGTAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTTCTTTCTCCACTTCTGACAAGTCTGTAAGAAGTCGATGTAATT  900

seq1  TCTCCTGGAATAGCTGGTCTGCTAAGGGACATTAACACTTGCTATGTGCT  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTCCTGGAATAGCTGGTCTGCTAAGGGACATT-ACACTTGCTATGTGCT  949

seq1  GAGACTTGTTCAGAGGTTCTTACACATTTTAATTTTCAATTTTTCTACAA  1000
      |||||||||||||| ||||||||||||||  | ||||||||||||||| |
seq2  GAGACTTGTTCAGA-GTTCTTACACATTT--AATTTCAATTTTTCTAC-A  995

seq1  GAGGG-TATCATCCTGACTCCTACCTGACCGATGTGGAAACTGAAGTACA  1049
      ||||| ||||||||||||||||||||||||||||||||||||| ||||| 
seq2  GAGGGTTATCATCCTGACTCCTACCTGACCGATGTGGAAACTG-AGTAC-  1043

seq1  AAGACAGCCTGTCAAAGCCTCAGCATTACGTGGCAGTGGAGAATGGATTC  1099
      ||||||||||||  ||| ||||||||||||| ||| |||||||  |||||
seq2  AAGACAGCCTGTTCAAG-CTCAGCATTACGTTGCATTGGAGAAATGATTC  1092

seq1  AAGGGCAGGCTGTGAAGCCCCAGC-ACCCATGTCTTACCCCCAGCGCTGA  1148
      |  |||| |||||| || |||||| || |||||| || ||||||||   |
seq2  A--GGCA-GCTGTGGAG-CCCAGCAACTCATGTCCTA-CCCCAGCG--AA  1135

seq1  TGCTGTGTTTGTGAAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCT  1193
      |||  || ||||||||||||| |||||||| |||||| |||||||
seq2  TGC--TGGTTGTGAAGCCTCTTTCTCTCTC-CTCTCT-TCTCTCT  1176

seq1: chr16_31141782_31142247
seq2: B6Ng01-123E23.g_65_530 (reverse)

seq1  CCACCCACCATTCACCCCACCCTCTTAACTATGGAAGACTTACTCTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACCATTCACCCCACCCTCTTAACTATGGAAGACTTACTCTTTGA  50

seq1  CAAAGTTCTGAAGCTGGGCCTTAATTGATCTCTGGGTTTGGTCAAACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTCTGAAGCTGGGCCTTAATTGATCTCTGGGTTTGGTCAAACAGA  100

seq1  ATCTAGAAAGTAAAACATAAGGTTGAATGTTAGAAAGAAAATGGGATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAAAGTAAAACATAAGGTTGAATGTTAGAAAGAAAATGGGATGTA  150

seq1  AACACCACGTTGTCTTGACAACACCCCACCCAATTCAATGACACCTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCACGTTGTCTTGACAACACCCCACCCAATTCAATGACACCTCATT  200

seq1  TCTTACTGAAGACCATGAAAGTGATATATGAAATTGAAGCCAGTTTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTGAAGACCATGAAAGTGATATATGAAATTGAAGCCAGTTTAGAG  250

seq1  CCAATTCTACGAGCCTCAAAAATAACTTGCTTTCTTCACTACAGAAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCTACGAGCCTCAAAAATAACTTGCTTTCTTCACTACAGAAAAGC  300

seq1  AAACAATTTCAATTCCTCTTCAGACTTTGGAAGCCAACCCACAGCAACGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTTCAATTCCTCTTCAGACTTTGGAAGCCAACCCACAGCAACGC  350

seq1  AAACCCCTTTCTCCTCTTTCCCCACGCCAGCTAAGAACAGCAGCAGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCTTTCTCCTCTTTCCCCACGCCAGCTAAGAACAGCAGCAGCTCT  400

seq1  GCCTGGCCCAGCCGGGAGTTTCCACTGGGAAGACTTGGGACCAGAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCCCAGCCGGGAGTTTCCACTGGGAAGACTTGGGACCAGAAACAA  450

seq1  TGGCTGAATTGAATTC  466
      ||||||||||||||||
seq2  TGGCTGAATTGAATTC  466