BAC Information

Click to search

BAC

Clone NameB6Ng01-123G15
Chromosome16 (Build37)
Map Location 73,680,897 - 73,681,861
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream geneRobo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123G15.bB6Ng01-123G15.g
ACCDH926584DH926585
length999627
definitionDH926584|Mus musculus domesticus DNA, BAC clone: B6Ng01-123G15, 5' end.DH926585|Mus musculus domesticus DNA, BAC clone: B6Ng01-123G15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccaaagcacatcttattcacacaaagaaacgaaacagataaaca
aaaccactgtggagcttgttgtaagctgttcagatgtgaatctttgagtg
cttatggatgcgtaacaagttagactgttttactttcacgaccctttagg
aaagagagccattttaactgtaaaatatagtaagacctgtgcaataagaa
cgtacattttgcgttgacttggcgcatgtcttgcttcacgttgcttactt
aatgagtaattcacattaagacatagcaattcctctgctgctgctctctt
cctagttattctgataaactaagatatatgcaaattctgtaaggtttcca
atctgtggttttcacttgccgaataaagttgagcggaactaatttttgaa
attgtacattttcaaaatatcaatattcggccaacatcttaagaaaagat
ctttttaaaaaccagacctatatcttgggtatccatagtttcttggctaa
tatccacttatcagtgagtacatattgtgagagttcctttgtgattgggt
tacctctctcaggatgatgccctccaggtccatccatttgcctaggatac
ccaagatataagatacaatttgctaaacacatgaaattcaagaagaacga
agaccaaagtgtggacactttgcccttcttagaaatgggaacaggatctt
ggtccgggacccgccgaacttaggaaattagtctgaacaggtgagagggt
gcgccagagaacctgacagcttctggaacaggcggaagcacagaggcgct
gaggcagcaccctttgtgggccggggacagccagccaccgtccggaccgg
aggacaggtgcccgcccggctggggaggcggcctaagccacagcagcagc
ggtcgccatcttggtccgagacccgccgaacttaggaaattagtctgaac
aggtgagaggtgcgcagagacctgacagcttctggaacagcagaagcac

gaattcttttgggtaattacatcttttgaaatctattttcctctgtctga
cagtgtgggcccaaagcagtgagttctacatttaggtgttaaaaggaacg
ttagtgaaagggtgaaatccaacaagaggaatccaaagacaaagtctatc
actaaggaaatgacatccacaccatccagagactgccccacatggggctc
catctcacagacagtcaccaaacccagacactattgtggatgccaacaag
tgcttgctgataggagcctgatatagctgtctcctgagaggctccaccag
tgcctgacaagtacagggggctgagcatagggtccccaatgaaggcgcta
gagaaaggactgaaggagctgaaggggttagcagccccataggaggaata
atgatataaaccaaccagtactcctagagctccctgggactaaaccacca
agcaaagagtacacatggtaggactcattgctccagttgcatatgtagcc
gatggcctagtcagttatcagtgggaggagaggccctttgtcctatgaaa
ggctctatgccccagtgtaggggaatgccagggccaggaagcagaagtgg
gtgggttggtgagcagggggggagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_73680897_73681861
seq2: B6Ng01-123G15.b_43_1006

seq1  GAATTCCCAAAGCACATCTTATTCACACAAAGAAACGAAACAGATAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAAGCACATCTTATTCACACAAAGAAACGAAACAGATAAACA  50

seq1  AAACCACTGTGGAGCTTGTTGTAAGCTGTTCAGATGTGAATCTTTGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACTGTGGAGCTTGTTGTAAGCTGTTCAGATGTGAATCTTTGAGTG  100

seq1  CTTATGGATGCGTAACAAGTTAGACTGTTTTACTTTCACGACCCTTTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGATGCGTAACAAGTTAGACTGTTTTACTTTCACGACCCTTTAGG  150

seq1  AAAGAGAGCCATTTTAACTGTAAAATATAGTAAGACCTGTGCAATAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGCCATTTTAACTGTAAAATATAGTAAGACCTGTGCAATAAGAA  200

seq1  CGTACATTTTGCGTTGACTTGGCGCATGTCTTGCTTCACGTTGCTTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACATTTTGCGTTGACTTGGCGCATGTCTTGCTTCACGTTGCTTACTT  250

seq1  AATGAGTAATTCACATTAAGACATAGCAATTCCTCTGCTGCTGCTCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTAATTCACATTAAGACATAGCAATTCCTCTGCTGCTGCTCTCTT  300

seq1  CCTAGTTATTCTGATAAACTAAGATATATGCAAATTCTGTAAGGTTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTATTCTGATAAACTAAGATATATGCAAATTCTGTAAGGTTTCCA  350

seq1  ATCTGTGGTTTTCACTTGCCGAATAAAGTTGAGCGGAACTAATTTTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGGTTTTCACTTGCCGAATAAAGTTGAGCGGAACTAATTTTTGAA  400

seq1  ATTGTACATTTTCAAAATATCAATATTCGGCCAACATCTTAAGAAAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACATTTTCAAAATATCAATATTCGGCCAACATCTTAAGAAAAGAT  450

seq1  CTTTTTAAAAACCAGACCTATATCTTGGGTATCCATAGTTTCTTGGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAAAACCAGACCTATATCTTGGGTATCCATAGTTTCTTGGCTAA  500

seq1  TATCCACTTATCAGTGAGTACATATTGTGAGAGTTCCTTTGTGATTGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACTTATCAGTGAGTACATATTGTGAGAGTTCCTTTGTGATTGGGT  550

seq1  TACCTCTCTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTCTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGATAC  600

seq1  CCAAGATATAAGATACAATTTGCTAAACACATGAAATTCAAGAAGAACGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATATAAGATACAATTTGCTAAACACATGAAATTCAAGAAGAACGA  650

seq1  AGACCAAAGTGTGGACACTTTGCCCTTCTTAGAAATGGGAACAGGATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAAAGTGTGGACACTTTGCCCTTCTTAGAAATGGGAACAGGATCTT  700

seq1  GGTCCGGGACCCGCCGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCGGGACCCGCCGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGT  750

seq1  GCGCCAGAGAACCTGACAGCTTCTGGAACAGGCGGAAGCACAGAGGCGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCAGAGAACCTGACAGCTTCTGGAACAGGCGGAAGCACAGAGGCGCT  800

seq1  GAGGCAGCACCCTTTGTGGGCCGGGGACAGCCAGCCACCGTCCGGACCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGCACCCTTTGTGGGCCGGGGACAGCCAGCCACCGTCCGGACCGG  850

seq1  AGGACAGGTGCCCGCCCGGCTGGGGAGGCGGCCTAAGCCACAGCAGCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGGTGCCCGCCCGGCTGGGGAGGCGGCCTAAGCCACAGCAGCAGC  900

seq1  GGTCGCCATCTTGGTCCGAGACCCGCCGAACTTAGGAAATTAGTCTGAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGCCATCTTGGTCCGAGACCCGCCGAACTTAGGAAATTAGTCTGAAC  950

seq1  AGGTGAGAGGGTGCG  965
      |||||||| ||||||
seq2  AGGTGAGA-GGTGCG  964


| Home | SequenceCutter | Blast | Download |