BAC Information

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BAC

Clone NameB6Ng01-123M09
Chromosome16 (Build37)
Map Location 31,458,729 - 31,580,168
singlet/doubletdoublet
Overlap genenone
Upstream geneTmem44, Lsg1, BC022623, LOC100043122, AI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1
Downstream geneGm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123M09.bB6Ng01-123M09.g
ACCDH926850DH926851
length1,122852
definitionDH926850|Mus musculus domesticus DNA, BAC clone: B6Ng01-123M09, 5' end.DH926851|Mus musculus domesticus DNA, BAC clone: B6Ng01-123M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,458,729 - 31,459,854)(31,579,656 - 31,580,168)
sequence
gaattcagcctgccggtttgggcttttaacccctctggatacaaacagag
gtgcactgttctagctcctgtcttcaaagcaaagtagatagggcctgaga
gggaaggtgagagggagccagggccccagggtccacgaatttacctgaca
gcgggatgcatttgtactgcagagcctgcctcctgctggcgtctttcagt
ggcattttacaccttgggagaatttgtatccgtgtttaataaagagattg
gtcataacactcgcagagtggcttggaattacactcagtacatccatcca
tcactgagaaccggaagggggctggaggtgacacatacttgagtcctgct
tcgcactaaactgtaaacgaggactgcctagtcaggctgttaagatttat
tttatttacagctagttgttgactatcttgctggccttgatttttagtct
ttattctagtaactgaaaagtggtggcacactcgtttaatcccagaattt
cataggcagaggcagtgagatctctgtaaattcaaggtcagcctggtctg
catagtgagttccaagattgcctgggctacatgataagaccccgcctcag
aaaacaaaagtccagggtaccttctttccaaataatctcaatggtaattg
aaacctcccacttaccctcacttgctgcaactaccagcctgcttgtccac
agaactacctttgatctttatgaaacagatgaggtgggcagatcacaggc
tgttcccattttatagatcatataactgaggcccagtagaggaaagtgac
tcacccagcatcagtgggtgggggcagaatgtccagcctccagaattatg
tgagcatgttttttgtatgttgttgcttaatcctctatgatggcatgttg
ttctaactgccaagctgaccaatatagccaggagcctagcagtctttgtc
ttactgactgctttcttgtggcctttcaggtagggagaggatcttagagt
ggtgtactgcatcccacctgtcaaacctttgtttgtaccttggagcttca
ttggtgccacagtacacaggcaagatgagagaaagcaaacctttgagcag
ggggtggatataggtggctgga
gaattctcagcctcagagtgatgggaattccatttggggctcttttccta
gccatgagttgctaaacccagagtcactcaatgccagaatgttagtaaag
acccttagagcccagtgggtctagtgccattgcttaatggaagaggaaca
gaagcctgaagttccccaaggtttaaaagtgatctactccaggttaccga
gcaaagtggccgcacagttgtcttagtatggtttcattactgtgacgagt
cacagtgaccaaggcaactcttatagaagcaaacatttaattggggctgg
cttacaggttcagaggttcagcccattatcatcatggcaggaagcatggc
aatgcccaagcagacatggtgctggaggagccgagagttctacatcttga
tccatagacaacagaaagggactatcttctgcaggcagccaaggcgaggc
tttcttttgttggagcttgagcaccaggagacctcaaagcccacctacac
agtgacacacttcctccaacaaggccacagctattccagcaagaccacac
ctcctcacagtgccatgtcccatgggccaagcctatttaaaccaccacag
cagttacagctaagatgatgatcctctgactttagtgtggcatagaggtg
gctttttcacattgctgtccccaaatacctgacaagacgaatcctggggg
taaaaaaggcagggtccagtcaggaagcagagagaaataactgctgatgt
cagctgtcttttccattttccttttacagtctggagcccaagctcaggga
atgatgcctctttcatttgagtgggtctccccctctgctcatctcttctg
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_31458729_31459854
seq2: B6Ng01-123M09.b_47_1168

seq1  GAATTCAGCCTGCCGGTTTGGGCTTTTAACCCCTCTGGATACAAACAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTGCCGGTTTGGGCTTTTAACCCCTCTGGATACAAACAGAG  50

seq1  GTGCACTGTTCTAGCTCCTGTCTTCAAAGCAAAGTAGATAGGGCCTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTGTTCTAGCTCCTGTCTTCAAAGCAAAGTAGATAGGGCCTGAGA  100

seq1  GGGAAGGTGAGAGGGAGCCAGGGCCCCAGGGTCCACGAATTTACCTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGTGAGAGGGAGCCAGGGCCCCAGGGTCCACGAATTTACCTGACA  150

seq1  GCGGGATGCATTTGTACTGCAGAGCCTGCCTCCTGCTGGCGTCTTTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGATGCATTTGTACTGCAGAGCCTGCCTCCTGCTGGCGTCTTTCAGT  200

seq1  GGCATTTTACACCTTGGGAGAATTTGTATCCGTGTTTAATAAAGAGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTACACCTTGGGAGAATTTGTATCCGTGTTTAATAAAGAGATTG  250

seq1  GTCATAACACTCGCAGAGTGGCTTGGAATTACACTCAGTACATCCATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAACACTCGCAGAGTGGCTTGGAATTACACTCAGTACATCCATCCA  300

seq1  TCACTGAGAACCGGAAGGGGGCTGGAGGTGACACATACTTGAGTCCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAGAACCGGAAGGGGGCTGGAGGTGACACATACTTGAGTCCTGCT  350

seq1  TCGCACTAAACTGTAAACGAGGACTGCCTAGTCAGGCTGTTAAGATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCACTAAACTGTAAACGAGGACTGCCTAGTCAGGCTGTTAAGATTTAT  400

seq1  TTTATTTACAGCTAGTTGTTGACTATCTTGCTGGCCTTGATTTTTAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTACAGCTAGTTGTTGACTATCTTGCTGGCCTTGATTTTTAGTCT  450

seq1  TTATTCTAGTAACTGAAAAGTGGTGGCACACTCGTTTAATCCCAGAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTAGTAACTGAAAAGTGGTGGCACACTCGTTTAATCCCAGAATTT  500

seq1  CATAGGCAGAGGCAGTGAGATCTCTGTAAATTCAAGGTCAGCCTGGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCAGAGGCAGTGAGATCTCTGTAAATTCAAGGTCAGCCTGGTCTG  550

seq1  CATAGTGAGTTCCAAGATTGCCTGGGCTACATGATAAGACCCCGCCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGAGTTCCAAGATTGCCTGGGCTACATGATAAGACCCCGCCTCAG  600

seq1  AAAACAAAAGTCCAGGGTACCTTCTTTCCAAATAATCTCAATGGTAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAGTCCAGGGTACCTTCTTTCCAAATAATCTCAATGGTAATTG  650

seq1  AAACCTCCCACTTACCCTCACTTGCTGCAACTACCAGCCTGCTTGTCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCCCACTTACCCTCACTTGCTGCAACTACCAGCCTGCTTGTCCAC  700

seq1  AGAACTACCTTTGATCTTTATGAAACAGATGAGGTGGGCAGATCACAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTACCTTTGATCTTTATGAAACAGATGAGGTGGGCAGATCACAGGC  750

seq1  TGTTCCCATTTTATAGATCATATAACTGAGGCCCAGTAGAGGAAAGTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCATTTTATAGATCATATAACTGAGGCCCAGTAGAGGAAAGTGAC  800

seq1  TCACCCAGCATCAGTGGGTGGGGGCAGAATGTCCAGCCTCCAGAATTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAGCATCAGTGGGTGGGGGCAGAATGTCCAGCCTCCAGAATTATG  850

seq1  TGAGCATGTTTTTTGTATGTTGTTGCTTAATCCTCTATGATGGCATGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGTTTTTTGTATGTTGTTGCTTAATCCTCTATGATGGCATGTTG  900

seq1  TTCTAACTGCCAAGCTGACCAATATAGCCAGGAGCCTAGCAGTCTTTGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACTGCCAAGCTGACCAATATAGCCAGGAGCCTAGCAGTCTTTGTC  950

seq1  TTACTGACTGCTTTCTTGTGGCCTTTCAGGTAGGGAGAGGATCTAGGAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  TTACTGACTGCTTTCTTGTGGCCTTTCAGGTAGGGAGAGGATCTTAGAGT  1000

seq1  -GTGTACTGCATCCCACCTGTCAAAACCTTTGTTTGTACCCTGGAGCCTC  1049
       ||||||||||||||||||||| ||||||||||||||||| |||||| ||
seq2  GGTGTACTGCATCCCACCTGTC-AAACCTTTGTTTGTACCTTGGAGCTTC  1049

seq1  AGTTGGTGCCACAGTACCACAGGCAAGATGAGAGAAAGCAAACCTTTGAG  1099
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  A-TTGGTGCCACAGTA-CACAGGCAAGATGAGAGAAAGCAAACCTTTGAG  1097

seq1  CAGGGGGTGGA-ATGCAGGGTGGCTGGA  1126
      ||||||||||| ||    ||||||||||
seq2  CAGGGGGTGGATAT---AGGTGGCTGGA  1122

seq1: chr16_31579656_31580168
seq2: B6Ng01-123M09.g_69_581 (reverse)

seq1  GAAGTGTGTCACTGTGTAGGTGGGCTTTGAGGTCTCCTGGTGCTCAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTGTCACTGTGTAGGTGGGCTTTGAGGTCTCCTGGTGCTCAAGCT  50

seq1  CCAACAAAAGAAAGCCTCGCCTTGGCTGCCTGCAGAAGATAGTCCCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAAAGAAAGCCTCGCCTTGGCTGCCTGCAGAAGATAGTCCCTTTC  100

seq1  TGTTGTCTATGGATCAAGATGTAGAACTCTCGGCTCCTCCAGCACCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTATGGATCAAGATGTAGAACTCTCGGCTCCTCCAGCACCATGT  150

seq1  CTGCTTGGGCATTGCCATGCTTCCTGCCATGATGATAATGGGCTGAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGGGCATTGCCATGCTTCCTGCCATGATGATAATGGGCTGAACCT  200

seq1  CTGAACCTGTAAGCCAGCCCCAATTAAATGTTTGCTTCTATAAGAGTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCTGTAAGCCAGCCCCAATTAAATGTTTGCTTCTATAAGAGTTGC  250

seq1  CTTGGTCACTGTGACTCGTCACAGTAATGAAACCATACTAAGACAACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCACTGTGACTCGTCACAGTAATGAAACCATACTAAGACAACTGT  300

seq1  GCGGCCACTTTGCTCGGTAACCTGGAGTAGATCACTTTTAAACCTTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCCACTTTGCTCGGTAACCTGGAGTAGATCACTTTTAAACCTTGGGG  350

seq1  AACTTCAGGCTTCTGTTCCTCTTCCATTAAGCAATGGCACTAGACCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAGGCTTCTGTTCCTCTTCCATTAAGCAATGGCACTAGACCCACT  400

seq1  GGGCTCTAAGGGTCTTTACTAACATTCTGGCATTGAGTGACTCTGGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTAAGGGTCTTTACTAACATTCTGGCATTGAGTGACTCTGGGTTT  450

seq1  AGCAACTCATGGCTAGGAAAAGAGCCCCAAATGGAATTCCCATCACTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTCATGGCTAGGAAAAGAGCCCCAAATGGAATTCCCATCACTCTG  500

seq1  AGGCTGAGAATTC  513
      |||||||||||||
seq2  AGGCTGAGAATTC  513