BAC Information

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BAC

Clone NameB6Ng01-123M12
Chromosome16 (Build37)
Map Location 52,880,365 - 53,032,261
singlet/doubletdoublet
Overlap geneLOC100043430, LOC667895
Upstream geneCblb, Alcam
Downstream geneLOC433027
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123M12.bB6Ng01-123M12.g
ACCDH926856DH926857
length442995
definitionDH926856|Mus musculus domesticus DNA, BAC clone: B6Ng01-123M12, 5' end.DH926857|Mus musculus domesticus DNA, BAC clone: B6Ng01-123M12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,880,365 - 52,880,812)(53,031,266 - 53,032,261)
sequence
caaggtcagagtttctgaggctggtctaagtaaaagtgaactcaatagtt
atctgggaattctccttcttaaaactgaaatggggaagttggtgaactat
gaactgataatttattcacttggtctgaagatagttcatcagatgaacca
gagtggcacatgcctttaatcccagcatttcggaggcagagacaggtgga
tttctgagttcgaggccagcctggtctacaaagttagttccaggacagcc
aggactatacagagaaaccctgtctcaaaaaaataaccaaaccaaccaac
caaacaaacaaacaaaaaggtaggacagccacttgaaaggaaagagagta
tattagaaagagacatatatattttttcaaaccaaaccatatgtgtgtgt
ataatttatatatatgtgtgtgtgtttgtgtgtgtgtgtgtg
gaattcatagctttcagcttttattttaaaaatgcatgtaatgcttacaa
ctaagagattaaaaaatttatcaatggataactatttgtagaaaaattaa
cttaataaattaatcaaactttcaattaattcagtttttttttcttctta
ctgtggtgacttaaagaatgtcaccataggctcatatagttgaatgggat
ttttcccagttggtggtctcttttggaaggattagcatgtgtggccttat
tagagaaggtgtttcactagggtagacttcaagattttaaaaggccacag
taggttcattctatggatcaggatctaagctctctgtctattgctattgg
tcatgcaagaccacctgtggccatgtttcctactaggccatcccttaacc
atttgaaactataagcaaaccccaattgagctttcttcaatagattgttt
ggctgtgtcatctctcttcagcaaaaagatagtaactaagatattttgat
ttaatttggtactgtagtttcatagtgtggtttcaagtcatttttggaga
tctatggtattgaaagtttaaagaagataaacctgccaaaaagaatcatt
aacagaaaactgtaaatctcttcataaaaatgtacataattacactattg
aaaagcccaaaatacacttaaaagataatttagctacaagtatcaaactg
cagcatgcttttgacattattacatgaatttttaaaaatgatgtcatgaa
tcagtatcttattttaaaacatcatttttataatgtatacaatagtatat
ttccattttgaaaggtttctcacattgtaatcattacatgattctctatt
tccagatttagctgcattttctctacacttaatgaatgataatctctgtt
aaaaaaattcattgttcctagaaaaacagactcaatcaccagcagataga
ttcatcagttgatctcacagtaagaggatattcctcattactgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_52880365_52880812
seq2: B6Ng01-123M12.b_49_496

seq1  GAATTCCAAGGTCAGAGTTTCTGAGGCTGGTCTAAGTAAAAGTGAACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGTCAGAGTTTCTGAGGCTGGTCTAAGTAAAAGTGAACTCA  50

seq1  ATAGTTATCTGGGAATTCTCCTTCTTAAAACTGAAATGGGGAAGTTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTATCTGGGAATTCTCCTTCTTAAAACTGAAATGGGGAAGTTGGTG  100

seq1  AACTATGAACTGATAATTTATTCACTTGGTCTGAAGATAGTTCATCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGAACTGATAATTTATTCACTTGGTCTGAAGATAGTTCATCAGAT  150

seq1  GAACCAGAGTGGCACATGCCTTTAATCCCAGCATTTCGGAGGCAGAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGAGTGGCACATGCCTTTAATCCCAGCATTTCGGAGGCAGAGACA  200

seq1  GGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTTAGTTCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTTAGTTCCAGG  250

seq1  ACAGCCAGGACTATACAGAGAAACCCTGTCTCAAAAAAATAACCAAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGGACTATACAGAGAAACCCTGTCTCAAAAAAATAACCAAACCA  300

seq1  ACCAACCAAACAAACAAACAAAAAGGTAGGACAGCCACTTGAAAGGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCAAACAAACAAACAAAAAGGTAGGACAGCCACTTGAAAGGAAAG  350

seq1  AGAGTATATTAGAAAGAGACATATATATTTTTTCAAACCAAACCATATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATATTAGAAAGAGACATATATATTTTTTCAAACCAAACCATATGT  400

seq1  GTGTGTATAATTTATATATATGTGTGTGTGTTTGTGTGTGTGTGTGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATAATTTATATATATGTGTGTGTGTTTGTGTGTGTGTGTGTG  448

seq1: chr16_53031266_53032261
seq2: B6Ng01-123M12.g_68_1062 (reverse)

seq1  TTCAGTAATTGAGAATATCCTCTTACTGTGAGATC-ACTGATGATTCTAT  49
      |||||||||   ||||||||||||||||||||||| |||||||| |||||
seq2  TTCAGTAATGAGGAATATCCTCTTACTGTGAGATCAACTGATGAATCTAT  50

seq1  CTTGCTGGTGATTGAGTCTGTTTTTCTAGGAACAATGAATTTTTTTTAAC  99
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  C-TGCTGGTGATTGAGTCTGTTTTTCTAGGAACAATGAA-TTTTTTTAAC  98

seq1  AGAGATTATCATTCATTAAGTGTAGAGAAAATGCAGCTAAATTCTGGAAA  149
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGAGATTATCATTCATTAAGTGTAGAGAAAATGCAGCTAAA-TCTGGAAA  147

seq1  TAGAGAATCATGTAATGATTACAATGTGAGAAACCTTTC-AAATGGAAAT  198
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAGAGAATCATGTAATGATTACAATGTGAGAAACCTTTCAAAATGGAAAT  197

seq1  ATACTATTGTATACATTATAAAAATGATGTTTTAAAATAAGATACTGATT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATTGTATACATTATAAAAATGATGTTTTAAAATAAGATACTGATT  247

seq1  CATGACATCATTTTTAAAAATTCATGTAATAATGTCAAAAGCATGCTGCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACATCATTTTTAAAAATTCATGTAATAATGTCAAAAGCATGCTGCA  297

seq1  GTTTGATACTTGTAGCTAAATTATCTTTTAAGTGTATTTTGGGCTTTTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATACTTGTAGCTAAATTATCTTTTAAGTGTATTTTGGGCTTTTCA  347

seq1  ATAGTGTAATTATGTACATTTTTATGAAGAGATTTACAGTTTTCTGTTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTAATTATGTACATTTTTATGAAGAGATTTACAGTTTTCTGTTAA  397

seq1  TGATTCTTTTTGGCAGGTTTATCTTCTTTAAACTTTCAATACCATAGATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTTTTGGCAGGTTTATCTTCTTTAAACTTTCAATACCATAGATC  447

seq1  TCCAAAAATGACTTGAAACCACACTATGAAACTACAGTACCAAATTAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAATGACTTGAAACCACACTATGAAACTACAGTACCAAATTAAAT  497

seq1  CAAAATATCTTAGTTACTATCTTTTTGCTGAAGAGAGATGACACAGCCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATCTTAGTTACTATCTTTTTGCTGAAGAGAGATGACACAGCCAA  547

seq1  ACAATCTATTGAAGAAAGCTCAATTGGGGTTTGCTTATAGTTTCAAATGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTATTGAAGAAAGCTCAATTGGGGTTTGCTTATAGTTTCAAATGG  597

seq1  TTAAGGGATGGCCTAGTAGGAAACATGGCCACAGGTGGTCTTGCATGACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGATGGCCTAGTAGGAAACATGGCCACAGGTGGTCTTGCATGACC  647

seq1  AATAGCAATAGACAGAGAGCTTAGATCCTGATCCATAGAATGAACCTACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAATAGACAGAGAGCTTAGATCCTGATCCATAGAATGAACCTACT  697

seq1  GTGGCCTTTTAAAATCTTGAAGTCTACCCTAGTGAAACACCTTCTCTAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTTTTAAAATCTTGAAGTCTACCCTAGTGAAACACCTTCTCTAAT  747

seq1  AAGGCCACACATGCTAATCCTTCCAAAAGAGACCACCAACTGGGAAAAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCACACATGCTAATCCTTCCAAAAGAGACCACCAACTGGGAAAAAT  797

seq1  CCCATTCAACTATATGAGCCTATGGTGACATTCTTTAAGTCACCACAGTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCAACTATATGAGCCTATGGTGACATTCTTTAAGTCACCACAGTA  847

seq1  AGAAGAAAAAAAAACTGAATTAATTGAAAGTTTGATTAATTTATTAAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAAAAAAACTGAATTAATTGAAAGTTTGATTAATTTATTAAGTT  897

seq1  AATTTTTCTACAAATAGTTATCCATTGATAAATTTTTTAATCTCTTAGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTACAAATAGTTATCCATTGATAAATTTTTTAATCTCTTAGTT  947

seq1  GTAAGCATTACATGCATTTTTAAAATAAAAGCTGAAAGCTATGAATTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCATTACATGCATTTTTAAAATAAAAGCTGAAAGCTATGAATTC  995