BAC Information

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BAC

Clone NameB6Ng01-124A24
Chromosome16 (Build37)
Map Location 73,002,110 - 73,143,930
singlet/doubletdoublet
Overlap geneRobo1
Upstream genenone
Downstream geneLOC100039310, LOC100039318, LOC100039326, Robo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124A24.bB6Ng01-124A24.g
ACCDH927067DH927068
length7611,049
definitionDH927067|Mus musculus domesticus DNA, BAC clone: B6Ng01-124A24, 5' end.DH927068|Mus musculus domesticus DNA, BAC clone: B6Ng01-124A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,002,110 - 73,002,860)(73,142,887 - 73,143,930)
sequence
gaattccaaataagaattgttttccattccttttctgtattgttttcatt
taggccgggactcctcaacattagtgaacctgccacgcagccatggctgg
cagacacgtggcccaacacaggcaacaaccacaatgactgctccatcaac
tgctgcacggccggcaatggcaacagcgacagcaacctgacaacctacag
tcgcccaggttagggacacgcacggctagagcccaaaatgcatcatcagc
cttaccaggagttagccagagaaagtcatgtgtccatcctgaatgaggag
gaaactggttaacaatcttaggaaatcataaatatgttactaactagcct
gctcaaatatcttctccatccctgaacagaacatacaaattctagaatca
tggaagataaaattatgaaaaaaatcatagtatttatatttctaattttt
attatgacaattttagggccaaagaattgatttcaaaacaaaacagattt
ttcagtggcaacaacactgataatcacctacagtaataaaggtttttgat
gagaatgaactaaacttttagatcagaattcacaatagaaaaaacaaatt
ctcaggctacagaggtgctcacggtgtatacacacataagcacagagcag
aaatatctgcctacttttttattgcatattgtataaaacttcacctaaaa
ctgttcaaattggaatgtggaaatctttacagggctaaaagaaggaaaag
tttagaaattc
gaattcatttgtagaataattttaatttcaccatacttaagactattatg
tgatgttttgtgttaagttccttctattcacattgaatataaggacattt
ggttttgagagacaactcaatttaaaaggaatggaattcgatcagatcca
aatcatgactgtaaatcttatttaaaaccctttgtttctatccattgaca
aacgccattaattctatatatgcctcccttcagcagaaatgcctttgaca
gagacaaacatttagtatgtaaggaagccgtgtttagtatacagtctttc
aacgctgaataaataacttgggaatagcacaatcgttgtttaacggctcc
attcctgtaaagttttctccgggtgggagggggtgtctgtatttcttctt
cagggctaaaatatcttcttctcctgaggcaacctctgcatcagtgacac
cagggacttcaacacgctgttgggagagagtcttgaccaagtttcagact
gcgcactcttcacttccggtcctctttcatttcctgaaggctgccttcac
tcttgcctctgttcattgtcgtaatctcctcacattttccttcagaaaaa
atggtctgccctgggctttgcaaaatgtgctgccgcgggctctgcctttc
ctctgcccaagtcacccggtcgacctaaaccatgttctctttaactcaat
ttttgaaactcctgctggggttgggacattctgtttccttcaaagtctaa
aaccctatttgaaactatccaggctgtgatcaaaatactgtaggtttttt
ctttaaatttgcttagaatttaccatgataaacttgtagatgatatgtat
taaaatatttttatggtgggaaaactttgatcttgaccagacagctcagt
gtgcatccaacaatcattagacagagcttccacacaaacaatcactgatt
ggctgtcagttataccattcatattcacattctgttgacattcagaatga
gaaaatatttttaaaagagacttgtttcatatatattaaataccttaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_73002110_73002860
seq2: B6Ng01-124A24.b_38_799

seq1  GGAATTCCAAATAAGAATTGTTTTCCATTCCTTTTCTGTATTGTTTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCCAAATAAGAATTGTTTTCCATTCCTTTTCTGTATTGTTTTCAT  50

seq1  TTAGGCCGGGACTCCTCAACATTAGTGAACCTGCCACGCAGCCATGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCCGGGACTCCTCAACATTAGTGAACCTGCCACGCAGCCATGGCTG  100

seq1  GCAGACACGTGGCCCAACACAGGCAACAACCACAATGACTGCTCCATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACACGTGGCCCAACACAGGCAACAACCACAATGACTGCTCCATCAA  150

seq1  CTGCTGCACGGCCGGCAATGGCAACAGCGACAGCAACCTGACAACCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCACGGCCGGCAATGGCAACAGCGACAGCAACCTGACAACCTACA  200

seq1  GTCGCCCAGGTTAGGGACACGCACGGCTAGAGCCCAAAATGCATCATCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCCCAGGTTAGGGACACGCACGGCTAGAGCCCAAAATGCATCATCAG  250

seq1  CCTTACCAGGAGTTAGCCAGAGAAAGTCATGTGTCCATCCTGAATGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCAGGAGTTAGCCAGAGAAAGTCATGTGTCCATCCTGAATGAGGA  300

seq1  GGAAACTGGTTAACAATCTTAGGAAATCATAAATATGTTACTAACTAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTGGTTAACAATCTTAGGAAATCATAAATATGTTACTAACTAGCC  350

seq1  TGCTCAAATATCTTCTCCATCCCTGAACAGAACATACAAATTCTAGAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAATATCTTCTCCATCCCTGAACAGAACATACAAATTCTAGAATC  400

seq1  ATGGAAGATAAAATTATGAAAAAAATCATAGTATTTATAATTCTAATTTT  450
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGGAAGATAAAATTATGAAAAAAATCATAGTATTTATATTTCTAATTTT  450

seq1  TATTATGACAATTTTAGGGCCAAAGAATTGATTTCAAAACAAAACAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGACAATTTTAGGGCCAAAGAATTGATTTCAAAACAAAACAGATT  500

seq1  TTTCAGTGGCAACAACACTGATAATCACCTACAGTAATAAAGGTTTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGGCAACAACACTGATAATCACCTACAGTAATAAAGGTTTTTGA  550

seq1  TGAGAATGAACTAAACTTTTAGATCAGAATTCACAATAG-AAAAACAAAT  599
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGAGAATGAACTAAACTTTTAGATCAGAATTCACAATAGAAAAAACAAAT  600

seq1  TCTCAGGCTACAGAGGTGCTCACGGTGTATACACACATAAGCACAGAGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGCTACAGAGGTGCTCACGGTGTATACACACATAAGCACAGAGCA  650

seq1  GAAATATCTGCCTAC--TTTTATTGCATATTGTAT-AAACTTCACCT-AA  695
      |||||||||||||||  |||||||||||||||||| ||||||||||| ||
seq2  GAAATATCTGCCTACTTTTTTATTGCATATTGTATAAAACTTCACCTAAA  700

seq1  ACTG-TCAAAATGGAATGTGG-AATC-TTACA-GGCT-AAAGAAGG-AAA  739
      |||| ||||| |||||||||| |||| ||||| |||| |||||||| |||
seq2  ACTGTTCAAATTGGAATGTGGAAATCTTTACAGGGCTAAAAGAAGGAAAA  750

seq1  GTTTAGAAATTC  751
      ||||||||||||
seq2  GTTTAGAAATTC  762

seq1: chr16_73142887_73143930
seq2: B6Ng01-124A24.g_60_1108 (reverse)

seq1  CTTAAGTTATATTTAATATTATATGAAAACAAGTCTCTTTTAAAAATAAT  50
      ||||||   ||||||||| |||||| |||||||||||||||||||||| |
seq2  CTTAAG--GTATTTAATA-TATATG-AAACAAGTCTCTTTTAAAAATATT  46

seq1  TTCTCA-TCTGAATAGTCAACAGAAATGTGAAATATGAATGGTATAACTG  99
      |||||| ||||||| |||||||| |||||| |||||||||||||||||||
seq2  TTCTCATTCTGAAT-GTCAACAG-AATGTG-AATATGAATGGTATAACTG  93

seq1  ACAG-CAATCTGTGATTGTTTGTGTGGAAGCTCTGTCTAATGAATTGTTT  148
      |||| ||||| ||||||||||||||||||||||||||||||| |||||| 
seq2  ACAGCCAATCAGTGATTGTTTGTGTGGAAGCTCTGTCTAATG-ATTGTTG  142

seq1  GATGCACACTGAGCTGTCT-GTC-AGATCAAAGTTTT-CCAACATAAAAA  195
      ||||||||||||||||||| ||| ||||||||||||| ||| ||||||||
seq2  GATGCACACTGAGCTGTCTGGTCAAGATCAAAGTTTTCCCACCATAAAAA  192

seq1  TATTTTTAATACATATCATCTACAAGTTTATCAT-GTTAATTCTAAGCAA  244
      || ||||||||||||||||||||||||||||||| || ||||||||||||
seq2  TA-TTTTAATACATATCATCTACAAGTTTATCATGGTAAATTCTAAGCAA  241

seq1  TTTTAAAG-AAAAACCTACAGTATTTTGATCACAGCCTGGATAGTTTCAA  293
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGAAAAAACCTACAGTATTTTGATCACAGCCTGGATAGTTTCAA  291

seq1  ATAGGGCTTTAGACTTTGAAGGAAACAGAATGTCC--AACCCAGCAGGAG  341
      |||||| ||||||||||||||||||||||||||||  | |||||||||||
seq2  ATAGGGTTTTAGACTTTGAAGGAAACAGAATGTCCCAACCCCAGCAGGAG  341

seq1  TTTCAAAAATTGAGTTAAAGAGAACATGGTTTAGGTCGACCGGGTGACTT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAATTGAGTTAAAGAGAACATGGTTTAGGTCGACCGGGTGACTT  391

seq1  GGGCAGAGG-AAGGCAGAG-CCGCGGCAGCACATTTTGCAAAG-CCAGGG  438
      ||||||||| ||||||||| ||||||||||||||||||||||| ||||||
seq2  GGGCAGAGGAAAGGCAGAGCCCGCGGCAGCACATTTTGCAAAGCCCAGGG  441

seq1  CAGACCA-TTTTTCTGAAGG-AAATGTGAGGAGATTACGACAATGAACAG  486
      ||||||| |||||||||||| |||||||||||||||||||||||||||||
seq2  CAGACCATTTTTTCTGAAGGAAAATGTGAGGAGATTACGACAATGAACAG  491

seq1  AGGCAAGAGTGAAGGCAGCCTTCAGGAAATGAAAGAGGACCGGAAGTGAA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGAGTGAAGGCAGCCTTCAGGAAATGAAAGAGGACCGGAAGTGAA  541

seq1  GAGTGCGCAGTCTGAAACTTGGTCAAGACTCTCTCCCAACAGCGTGTTGA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCGCAGTCTGAAACTTGGTCAAGACTCTCTCCCAACAGCGTGTTGA  591

seq1  AGTCCCTGGTGTCACTGATGCAGAGGTTGCCTCAGGAGAAGAAGATATTT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTGGTGTCACTGATGCAGAGGTTGCCTCAGGAGAAGAAGATATTT  641

seq1  TAGCCCTGAAGAAGAAATACAGACACCCCCTCCCACCCGGAGAAAACTTT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGAAGAAGAAATACAGACACCCCCTCCCACCCGGAGAAAACTTT  691

seq1  ACAGGAATGGAGCCGTTAAACAACGATTGTGCTATTCCCAAGTTATTTAT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATGGAGCCGTTAAACAACGATTGTGCTATTCCCAAGTTATTTAT  741

seq1  TCAGCGTTGAAAGACTGTATACTAAACACGGCTTCCTTACATACTAAATG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGTTGAAAGACTGTATACTAAACACGGCTTCCTTACATACTAAATG  791

seq1  TTTGTCTCTGTCAAAGGCATTTCTGCTGAAGGGAGGCATATATAGAATTA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCTGTCAAAGGCATTTCTGCTGAAGGGAGGCATATATAGAATTA  841

seq1  ATGGCGTTTGTCAATGGATAGAAACAAAGGGTTTTAAATAAGATTTACAG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGTTTGTCAATGGATAGAAACAAAGGGTTTTAAATAAGATTTACAG  891

seq1  TCATGATTTGGATCTGATCGAATTCCATTCCTTTTAAATTGAGTTGTCTC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATTTGGATCTGATCGAATTCCATTCCTTTTAAATTGAGTTGTCTC  941

seq1  TCAAAACCAAATGTCCTTATATTCAATGTGAATAGAAGGAACTTAACACA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACCAAATGTCCTTATATTCAATGTGAATAGAAGGAACTTAACACA  991

seq1  AAACATCACATAATAGTCTTAAGTATGGTGAAATTAAAATTATTCTACAA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCACATAATAGTCTTAAGTATGGTGAAATTAAAATTATTCTACAA  1041

seq1  ATGAATTC  1044
      ||||||||
seq2  ATGAATTC  1049