BAC Information

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BAC

Clone NameB6Ng01-124L10
Chromosome16 (Build37)
Map Location 33,659,344 - 33,796,015
singlet/doubletdoublet
Overlap geneSlc12a8, 4632417D23Rik, Heg1, Muc13
Upstream geneTnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4, Zfp148
Downstream geneItgb5, Umps, Kalrn, LOC100043670, Ropn1, Ccdc14, Mylk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124L10.bB6Ng01-124L10.g
ACCDH927550DH927551
length959998
definitionDH927550|Mus musculus domesticus DNA, BAC clone: B6Ng01-124L10, 5' end.DH927551|Mus musculus domesticus DNA, BAC clone: B6Ng01-124L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,795,055 - 33,796,015)(33,659,344 - 33,660,341)
sequence
gaattctctaacctctagccatttccccaagccttcccagcaaaggattc
ccttctcagtacccttatgtcttacagaaggcatttcttcttcatggtga
ctccagaaaatcacgtagatcttatcagttctaattgggacctgaagact
tggccacagcacccaggcttggcagaggagatctggtgaggcctaccctc
ctcttaggacagctcttctcccccaatcttaaaagcagatcaaaaaaaaa
atattggtccagggaataaagaaagaagtttgcttatggatagtattaaa
tatccattaatgatatttttagggtatgaaaggatatgaatataaaagtt
gaacacatttttaatgttatttgattctcaaaatactcaatattattaat
gtgtttgatgtataaaatgcatttaaataataaaaaaattaagaagaaaa
aaaagaaagaaagaaaagaagcctgctgccaaggctggccggctgtgttc
aatctcactcagggggtgggaggagagaaaccactttctgggagttgtcc
gatgtcctccacatgtatggtaattaaatgtagtaagaggtttcaaaagc
tcctatcttgccatgtatgttggctcatacctataacccagcactccaag
gcagttggatcagaagttcatctactgtatggagagttcagtttaacctt
ggtagcacgagatttcatcccccaaacaaagcaagtcaagtggtccttta
cattgaactcaatttctcttcccccttccactgcctccaatgccttattc
ctttcttgcatttgacgtctagatctggatttctctcagaatggggtggg
gtggggggacaaaatcctacctactcaaatccagataaactctccctagt
ccagtagaagaaccctgtaggggctcaaacctccactgggatgcctcttt
ttggcagag
gaattcttttgctctctttgtgtctccccacctctaagtttttttttttt
aattgtggtaagacacacataacataatcttaattatctgtaagtgtata
ttcatggtgttaaataaaaccatattgtcatatagccattatcatcactc
atctgcagagctgaaactccatgtccattgagctgtagctctgcattccc
ttgcatgctttggtttttaaattatgtgtatcggagagcaaagtatatgg
gtgtaggtgccctaggaggctggagttgttagatttctctggagctggag
ttacaggcaaagttgtaagctgtctaacttgggtgccaggaagagaactc
aggtcctccgccagagcggtactttctcttcacctctgagccatgtctcc
ggcccataccccagcatccttttgaggtagctctttgcaaatagtgacaa
tctgttcaagttggcacaagaagtgagatttggtgctggagcttgagatg
acaaagaccagggtgtagaggtgtggaaacaaagggaggggccgagagag
ctgaggggccagggatggaggaggggaatcgcctaaaaatgctttcaact
gcattacctgtccttggagctgtggtaaatatgggataacccctgcctcc
catcttgtctgaggcatgaggctgggtggctcaggtcacagaatatctac
atagatttttttccccctccccaacctaggactgacagaaagtagattaa
gtggaattaggttgggcacagaaagctgcctacaaaagtctgagcttcaa
atgggtggggtgggggatatctggcataatctggtttacgagaatatatt
tagtcatttcctggcttgaagcttaaaagatgaccacaggtttcagccgg
ctcctggagctgtctctgatttcctggaatggccctccaggtctcgaagg
taccgttttggatggtgttctgggaaaaggaccccttgattgaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_33795055_33796015
seq2: B6Ng01-124L10.b_47_1005 (reverse)

seq1  CTCTGGCCAAAAAGAGCAATCCCAGTGGGGGTTAGAGCCCCTACAGGTGT  50
      |||| |||||||||||  |||||||||| |||| ||||||||||||| ||
seq2  CTCT-GCCAAAAAGAGGCATCCCAGTGGAGGTTTGAGCCCCTACAGG-GT  48

seq1  TCTTCTTCTGGACTAGGGAGAGTTTATCTGGGTTTGAGTAGGTAAGGAAT  100
      |||||| |||||||||||||||||||||||| ||||||||||| |||| |
seq2  TCTTCTACTGGACTAGGGAGAGTTTATCTGGATTTGAGTAGGT-AGGATT  97

seq1  TTGT-CCCCCACCCCACCCCATTCTGAGAGAAATCCAGATCTAGACGTCA  149
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCCCCACCCCACCCCATTCTGAGAGAAATCCAGATCTAGACGTCA  147

seq1  AATGCAAGAAAGGAATAAGGCATTGGAGGCAGTGGAAGGGGGAAGAGAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAGAAAGGAATAAGGCATTGGAGGCAGTGGAAGGGGGAAGAGAAA  197

seq1  TTGAGTTCAATGTAAAGGACCACTTGACTTGCTTTGTTTGGGGGATGGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGAGTTCAATGTAAAGGACCACTTGACTTGCTTTGTTTGGGGGATGAAA  247

seq1  TCTCGTGCTACCAAGGTTAAACTGAACTCTCCATACAGTAGATGAACTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTGCTACCAAGGTTAAACTGAACTCTCCATACAGTAGATGAACTTC  297

seq1  TGATCCAACTGCCTTGGAGTGCTGGGTTATAGGTATGAGCCAACATACAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCAACTGCCTTGGAGTGCTGGGTTATAGGTATGAGCCAACATACAT  347

seq1  GGCAAGATAGGAGCTTTTGAAACCTCTTACTACATTTAATTACCATACAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGATAGGAGCTTTTGAAACCTCTTACTACATTTAATTACCATACAT  397

seq1  GTGGAGGACATCGGACAACTCCCAGAAAGTGGTTTCTCTCCTCCCACCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGACATCGGACAACTCCCAGAAAGTGGTTTCTCTCCTCCCACCCC  447

seq1  CTGAGTGAGATTGAACACAGCCGGCCAGCCTTGGCAGCAGGCTTCTTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGAGATTGAACACAGCCGGCCAGCCTTGGCAGCAGGCTTCTTTTC  497

seq1  TTTCTTTCTTTTTTTTCTTCTTAATTTTTTTATTATTTAAATGCATTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTTTTTTCTTCTTAATTTTTTTATTATTTAAATGCATTTTA  547

seq1  TACATCAAACACATTAATAATATTGAGTATTTTGAGAATCAAATAACATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCAAACACATTAATAATATTGAGTATTTTGAGAATCAAATAACATT  597

seq1  AAAAATGTGTTCAACTTTTATATTCATATCCTTTCATACCCTAAAAATAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTGTTCAACTTTTATATTCATATCCTTTCATACCCTAAAAATAT  647

seq1  CATTAATGGATATTTAATACTATCCATAAGCAAACTTCTTTCTTTATTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATGGATATTTAATACTATCCATAAGCAAACTTCTTTCTTTATTCC  697

seq1  CTGGACCAATATTTTTTTTTTGATCTGCTTTTAAGATTGGGGGAGAAGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCAATATTTTTTTTTTGATCTGCTTTTAAGATTGGGGGAGAAGAG  747

seq1  CTGTCCTAAGAGGAGGGTAGGCCTCACCAGATCTCCTCTGCCAAGCCTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTAAGAGGAGGGTAGGCCTCACCAGATCTCCTCTGCCAAGCCTGG  797

seq1  GTGCTGTGGCCAAGTCTTCAGGTCCCAATTAGAACTGATAAGATCTACGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGGCCAAGTCTTCAGGTCCCAATTAGAACTGATAAGATCTACGT  847

seq1  GATTTTCTGGAGTCACCATGAAGAAGAAATGCCTTCTGTAAGACATAAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTGGAGTCACCATGAAGAAGAAATGCCTTCTGTAAGACATAAGG  897

seq1  GTACTGAGAAGGGAATCCTTTGCTGGGAAGGCTTGGGGAAATGGCTAGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGAGAAGGGAATCCTTTGCTGGGAAGGCTTGGGGAAATGGCTAGAG  947

seq1  GTTAGAGAATTC  961
      ||||||||||||
seq2  GTTAGAGAATTC  959

seq1: chr16_33659344_33660341
seq2: B6Ng01-124L10.g_70_1061

seq1  GAATTCTTTTGCTCTCTTTGTGTCTCCCCACCTCTAAGTTTTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGCTCTCTTTGTGTCTCCCCACCTCTAAGTTTTTTTTTTTT  50

seq1  AATTGTGGTAAGACACACATAACATAATCTTAATTATCTGTAAGTGTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGGTAAGACACACATAACATAATCTTAATTATCTGTAAGTGTATA  100

seq1  TTCATGGTGTTAAATAAAACCATATTGTCATATAGCCATTATCATCACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGTGTTAAATAAAACCATATTGTCATATAGCCATTATCATCACTC  150

seq1  ATCTGCAGAGCTGAAACTCCATGTCCATTGAGCTGTAGCTCTGCATTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAGAGCTGAAACTCCATGTCCATTGAGCTGTAGCTCTGCATTCCC  200

seq1  TTGCATGCTTTGGTTTTTAAATTATGTGTATCGGAGAGCAAAGTATATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGCTTTGGTTTTTAAATTATGTGTATCGGAGAGCAAAGTATATGG  250

seq1  GTGTAGGTGCCCTAGGAGGCTGGAGTTGTTAGATTTCTCTGGAGCTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGTGCCCTAGGAGGCTGGAGTTGTTAGATTTCTCTGGAGCTGGAG  300

seq1  TTACAGGCAAAGTTGTAAGCTGTCTAACTTGGGTGCCAGGAAGAGAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGCAAAGTTGTAAGCTGTCTAACTTGGGTGCCAGGAAGAGAACTC  350

seq1  AGGTCCTCCGCCAGAGCGGTACTTTCTCTTCACCTCTGAGCCATGTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTCCGCCAGAGCGGTACTTTCTCTTCACCTCTGAGCCATGTCTCC  400

seq1  GGCCCATACCCCAGCATCCTTTTGAGGTAGCTCTTTGCAAATAGTGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATACCCCAGCATCCTTTTGAGGTAGCTCTTTGCAAATAGTGACAA  450

seq1  TCTGTTCAAGTTGGCACAAGAAGTGAGATTTGGTGCTGGAGCTTGAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCAAGTTGGCACAAGAAGTGAGATTTGGTGCTGGAGCTTGAGATG  500

seq1  ACAAAGACCAGGGTGTAGAGGTGTGGAAACAAAGGGAGGGGCCGAGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACCAGGGTGTAGAGGTGTGGAAACAAAGGGAGGGGCCGAGAGAG  550

seq1  CTGAGGGGCCAGGGATGGAGGAGGGGAATCGCCTAAAAATGCTTTCAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGGCCAGGGATGGAGGAGGGGAATCGCCTAAAAATGCTTTCAACT  600

seq1  GCATTACCTGTCCTTGGAGCTGTGGTAAATATGGGATAACCCCTGCCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACCTGTCCTTGGAGCTGTGGTAAATATGGGATAACCCCTGCCTCC  650

seq1  CATCTTGTCTGAGGCATGAGGCTGGGTGGCTCAGGTCACAGAATATCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGTCTGAGGCATGAGGCTGGGTGGCTCAGGTCACAGAATATCTAC  700

seq1  ATAGATTTTTTTCCCCCTCCCCAACCTAGGACTGACAGAAAGTAGATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTTTTTTCCCCCTCCCCAACCTAGGACTGACAGAAAGTAGATTAA  750

seq1  GTGGAATTAGGTTTGGCACAG-AAGCTGCCTACAAAAGTCTGAGCTTCAA  799
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  GTGGAATTAGGTTGGGCACAGAAAGCTGCCTACAAAAGTCTGAGCTTCAA  800

seq1  ATGTGTGGG--TGGGGATATCTGGCATAATCTGATTTACGAGAATATATT  847
      ||| |||||   ||||||||||||||||||||| ||||||||||||||||
seq2  ATGGGTGGGGTGGGGGATATCTGGCATAATCTGGTTTACGAGAATATATT  850

seq1  TAGTCATTT-CTGGCTTGAAAGCCTAAAAGAGTGACCACAGGGTTCAGCA  896
      ||||||||| |||||||| |||| ||||||| |||||||||| |||||| 
seq2  TAGTCATTTCCTGGCTTG-AAGCTTAAAAGA-TGACCACAGGTTTCAGC-  897

seq1  CGGCTCCTTGAGCTGTACTCTGATTTCCTGGAATGTCACCTCCAAGGTCA  946
      |||||||| ||||||| |||||||||||||||||| | ||||| ||||| 
seq2  CGGCTCCTGGAGCTGT-CTCTGATTTCCTGGAATGGC-CCTCC-AGGTCT  944

seq1  CTGAGGTCACTGTTTTGGAGGGTGTTCCTGGGAAAAGGCAACGCTTTGAT  996
      |  |||| || |||||||| |||||| |||||||||||  || | |||||
seq2  CGAAGGT-ACCGTTTTGGATGGTGTT-CTGGGAAAAGG--ACCCCTTGAT  990

seq1  TG  998
      ||
seq2  TG  992