BAC Information

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BAC

Clone NameB6Ng01-125A14
Chromosome16 (Build37)
Map Location 97,109,309 - 97,222,426
singlet/doubletdoublet
Overlap geneDscam
Upstream geneLOC100040997, Dscr2, Brwd1, LOC100041318, Hmgn1, Wrb, 4921526F01Rik, Sh3bgr, B3galt5, Jam4, Itgb2l, Pcp4
Downstream geneBace2, Mx1, ORF9, EG668559, LOC100041436, Mx2, Tmprss2, Ripk4, Prdm15, 5830404H04Rik, Zfp295, LOC100041502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125A14.bB6Ng01-125A14.g
ACCDH927787DH927788
length1,1541,108
definitionDH927787|Mus musculus domesticus DNA, BAC clone: B6Ng01-125A14, 5' end.DH927788|Mus musculus domesticus DNA, BAC clone: B6Ng01-125A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,109,309 - 97,110,477)(97,221,350 - 97,222,426)
sequence
gaattctggtccctagcagccatgaaaaatctgggtaagccgtgtgtgac
tatacttcagcacttgggcaaacacagtggatctctggagttctctgacc
agccagattggctgaatcagtgagctcccggttcaatgagagactctgtc
tcacaaactaacatggagagaaacagatgcctgaagtcaatctcagctac
cacactcatgcacatgttccacacacataagcatacacatgtgatcttat
gtacacacatgtaacatgcaatgaataaaataattatacttatctcaatg
agcttaaatttatgtaaagcatgaaatacactacgtgactgccaatagaa
tgttccaggttttattcccatatactgtatggtgttctgttccaacagtc
aatctgggtcactctgcccaaggcctcggtctgtgggaacctccactagt
gggagagaagtgaaacaacatcaggattgtcttgacttttgttctcctct
ttcctttggatgcacaaggcaaacagcttcctgtcagagctggcactgag
taacccagctgcaaagaatgtctgagctaggatctgtgccaaatgttata
ctagatgcaagagaaatgacagaaatctgcaaaatcctggcttgggttga
aattagtagcttgtgtttcagtagaattagatataatcagataattccat
attaaactcagagtgagattggaaataaattctgatatttgtgatagttt
ctgtgttagagggaaacatggcttttctactagcttttgaatactaagag
ctttgtgggtgtgcatgtgtgtgtatatgtgcatgtgtgtgtgcacgtgt
gcatatgtgtgtgggttcatgtgcacactatcaaacatattgttgtcatg
taggatgaagctcagcctgtcagttgtgtatctagtttttagttcaggac
ccacagatgataacagcctccctctcttcagaggcttgctgtctgaggag
agagaggacatcactgagaacaccctcacagtctgtcatgctgtctcagt
gtgacaaatctccctggtgtgttactctagaaagccactcttgacaagct
agagttgcatgcttgcagatttgcatgtcattgaatacgaccttcatttt
ctcc
gaattctcttctgtgcctcatctattcaggttttatcatagatgttcatc
gtgccaatgtgatgtgttgtttgtcgatttgtagctattaaaccatcctt
gtacccctagggtaattcttgtttgctcatggcaaatatatttttaaatg
tgctattggatttggtttgctaacttcctgagaatttttttcaccaatgt
tcattgaggatattggctgacaactttctgtcttcttgtgtttttctctg
atttgtgtgtcaatggtagtgctggccttctgggatctatttgcaaaaac
tcacagttgtgttaatttaagtagaactggtattactttgctttcaatga
ttagttgaattaaacagagaaattatctggtttgggtactttggggggat
aaatttaaattactgtgtcaattattacttgttatcaattttgccttcat
tcatggtttagcctcatgttaatggagtatgtgtccaggaacctgtcagt
ttctttttgctcattaaatttcgtggcatttagctgttcgtatgagctgt
ttaaaaatagtttccagttcaaatttaatcttacaataaagaaagatttg
ttgactatagaagtcttcatggccacatttgtaacacttacagatatgat
ggaaaatgaatttctagagctgattattttgtagccttattataagtaga
aatttaataaagtgctaatgaaaacaagacacaatgggctcactgaaaat
aagttatgcaaacaaacctaatttcctttcttttaaataattaatttcat
tatatattggggtaatttaagagatataatattttacttcatacttgtga
aaatggagaatgttcattatataaaatagagtgaattacattttatttaa
aatcactgttcccaggctcagcatggtagtacatgcctgtaaccctggct
attcatagagcagttattgcaagatcaggctagcctgggctacactataa
aatatgaaggtctcattgaacagaaaaaataataaatgtaacaacaatca
aaataacaacagacccagcagctttgttactcccgacagtgatttttttt
gagcctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_97109309_97110477
seq2: B6Ng01-125A14.b_47_1200

seq1  GAATTCTGGTCCCTAGCAGCCATGAAAAATCTGGGTAAGCCGTGTGTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTCCCTAGCAGCCATGAAAAATCTGGGTAAGCCGTGTGTGAC  50

seq1  TATACTTCAGCACTTGGGCAAACACAGTGGATCTCTGGAGTTCTCTGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTCAGCACTTGGGCAAACACAGTGGATCTCTGGAGTTCTCTGACC  100

seq1  AGCCAGATTGGCTGAATCAGTGAGCTCCCGGTTCAATGAGAGACTCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGATTGGCTGAATCAGTGAGCTCCCGGTTCAATGAGAGACTCTGTC  150

seq1  TCACAAACTAACATGGAGAGAAACAGATGCCTGAAGTCAATCTCAGCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAACTAACATGGAGAGAAACAGATGCCTGAAGTCAATCTCAGCTAC  200

seq1  CACACTCATGCACATGTTCCACACACATAAGCATACACATGTGATCTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCATGCACATGTTCCACACACATAAGCATACACATGTGATCTTAT  250

seq1  GTACACACATGTAACATGCAATGAATAAAATAATTATACTTATCTCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACACATGTAACATGCAATGAATAAAATAATTATACTTATCTCAATG  300

seq1  AGCTTAAATTTATGTAAAGCATGAAATACACTACGTGACTGCCAATAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAAATTTATGTAAAGCATGAAATACACTACGTGACTGCCAATAGAA  350

seq1  TGTTCCAGGTTTTATTCCCATATACTGTATGGTGTTCTGTTCCAACAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAGGTTTTATTCCCATATACTGTATGGTGTTCTGTTCCAACAGTC  400

seq1  AATCTGGGTCACTCTGCCCAAGGCCTCGGTCTGTGGGAACCTCCACTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGGTCACTCTGCCCAAGGCCTCGGTCTGTGGGAACCTCCACTAGT  450

seq1  GGGAGAGAAGTGAAACAACATCAGGATTGTCTTGACTTTTGTTCTCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGAAGTGAAACAACATCAGGATTGTCTTGACTTTTGTTCTCCTCT  500

seq1  TTCCTTTGGATGCACAAGGCAAACAGCTTCCTGTCAGAGCTGGCACTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGGATGCACAAGGCAAACAGCTTCCTGTCAGAGCTGGCACTGAG  550

seq1  TAACCCAGCTGCAAAGAATGTCTGAGCTAGGATCTGTGCCAAATGTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCAGCTGCAAAGAATGTCTGAGCTAGGATCTGTGCCAAATGTTATA  600

seq1  CTAGATGCAAGAGAAATGACAGAAATCTGCAAAATCCTGGCTTGGGTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGCAAGAGAAATGACAGAAATCTGCAAAATCCTGGCTTGGGTTGA  650

seq1  AATTAGTAGCTTGTGTTTCAGTAGAATTAGATATAATCAGATAATTCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTAGCTTGTGTTTCAGTAGAATTAGATATAATCAGATAATTCCAT  700

seq1  ATTAAACTCAGAGTGAGATTGGAAATAAATTCTGATATTTGTGATAGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACTCAGAGTGAGATTGGAAATAAATTCTGATATTTGTGATAGTTT  750

seq1  CTGTGTTAGAGGGAAACATGGCTTTTCTACTAGCTTTTGAATACTAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTAGAGGGAAACATGGCTTTTCTACTAGCTTTTGAATACTAAGAG  800

seq1  CTTTGTGGGTGTGCATGTGTGTGTATATGTGCATGTGTGTGTGCACGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGGTGTGCATGTGTGTGTATATGTGCATGTGTGTGTGCACGTGT  850

seq1  GCATATGTGTGTGGGTTCATGTGCACACTATCAAACATATTGTTGTCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGTGTGTGGGTTCATGTGCACACTATCAAACATATTGTTGTCATG  900

seq1  TAGGATGAAGCTCAGCCTGTCAGTTGTGTATCTAGTTTTTAAGTTCAGGG  950
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  TAGGATGAAGCTCAGCCTGTCAGTTGTGTATCTAGTTTTT-AGTTCA-GG  948

seq1  ACCCACAGATGATAAACAGCCTCCCTCTCCTTCAGGAGGCTTGCTGTCCT  1000
      ||||||||||||| |||||||||||||| ||||| |||||||||||| ||
seq2  ACCCACAGATGAT-AACAGCCTCCCTCT-CTTCA-GAGGCTTGCTGT-CT  994

seq1  GAGGAGAGAGAGGACATCCACTGAGAAACAACCCTCACAGTCCTGTCATG  1050
      ||||||||||||||||| |||||||||   ||||||||||| ||||||||
seq2  GAGGAGAGAGAGGACAT-CACTGAGAA--CACCCTCACAGT-CTGTCATG  1040

seq1  CTGTCTCAGTGTGACAAAATCTCCCCTGGTGTGTTACTCTAGAACAGGCC  1100
      ||||||||||||||| |||||| ||||||||||||||||||||  | |||
seq2  CTGTCTCAGTGTGAC-AAATCT-CCCTGGTGTGTTACTCTAGA--AAGCC  1086

seq1  ACTC-TGACAAGCTAGAGTGTGCAATGCTGGCAGATTTTGCATGTCCATT  1149
      |||| |||||||||||||| ||| ||||| ||||| ||||||||| ||||
seq2  ACTCTTGACAAGCTAGAGT-TGC-ATGCTTGCAGA-TTTGCATGT-CATT  1132

seq1  GATAACGA-CTTCA-TTTCTCC  1169
      ||  |||| ||||| |||||||
seq2  GAATACGACCTTCATTTTCTCC  1154

seq1: chr16_97221350_97222426
seq2: B6Ng01-125A14.g_110_1171 (reverse)

seq1  ACAGGCTCAAAAAAAATCACTGTCGGGGAGTAACAAGGCTGGCTGGGTTC  50
      |||||||||||||||||||||||| ||||||||||| ||| |||||||  
seq2  ACAGGCTCAAAAAAAATCACTGTC-GGGAGTAACAAAGCT-GCTGGGT--  46

seq1  TTGTTGTTATTTTGGTTTTGTTTGTATCATTTTATTTATTTTTTCTGTTT  100
       ||||||||||||| ||    ||||  |||||   |||||||||||| ||
seq2  CTGTTGTTATTTTGATT---GTTGTTACATTT--ATTATTTTTTCTG-TT  90

seq1  CAATGAGAACTTCATATTTTATAGTGTAG-CCAGGCTAGCCTGGATCTTG  149
      |||||||| |||||||||||||||||||| |||||||||||| |||||||
seq2  CAATGAGACCTTCATATTTTATAGTGTAGCCCAGGCTAGCCT-GATCTTG  139

seq1  CAATAACCTGCTCTATGAATAGCCAGGGTTACAGGCATGTACTACCATGC  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAA-CTGCTCTATGAATAGCCAGGGTTACAGGCATGTACTACCATGC  188

seq1  TGAGCCTGGGAACAGTGATTTTTAAATAAAATGTAATTCACTCTATTTTT  249
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  TGAGCCTGGGAACAGTGA-TTTTAAATAAAATGTAATTCACTCTA-TTTT  236

seq1  ATATAATGAACATTTCTCCATTTTTCACAAGTATGAAGTAAAATATTATA  299
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  ATATAATGAACA-TTCTCCA-TTTTCACAAGTATGAAGTAAAATATTATA  284

seq1  TCTCTTAAATTACCCCAATATATAATGAAATTAATTATTTAAAAGAAAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAAATTACCCCAATATATAATGAAATTAATTATTTAAAAGAAAGG  334

seq1  AAATTAGGTTTGTTTGCATAACTTATTTTCAGTGAGCCCATTGTGTCTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGGTTTGTTTGCATAACTTATTTTCAGTGAGCCCATTGTGTCTTG  384

seq1  TTTTCATTAGCACTTTATTAAATTTCTACTTATAATAAGGCTACAAAATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTAGCACTTTATTAAATTTCTACTTATAATAAGGCTACAAAATA  434

seq1  ATCAGCTCTAGAAATTCATTTTCCATCATATCTGTAAGTGTTACAAATGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTCTAGAAATTCATTTTCCATCATATCTGTAAGTGTTACAAATGT  484

seq1  GGCCATGAAGACTTCTATAGTCAACAAATCTTTCTTTATTGTAAGATTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGAAGACTTCTATAGTCAACAAATCTTTCTTTATTGTAAGATTAA  534

seq1  ATTTGAACTGGAAACTATTTTTAAACAGCTCATACGAACAGCTAAATGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACTGGAAACTATTTTTAAACAGCTCATACGAACAGCTAAATGCC  584

seq1  ACGAAATTTAATGAGCAAAAAGAAACTGACAGGTTCCTGGACACATACTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAATTTAATGAGCAAAAAGAAACTGACAGGTTCCTGGACACATACTC  634

seq1  CATTAACATGAGGCTAAACCATGAATGAAGGCAAAATTGATAACAAGTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACATGAGGCTAAACCATGAATGAAGGCAAAATTGATAACAAGTAA  684

seq1  TAATTGACACAGTAATTTAAATTTATCCCCCCAAAGTACCCAAACCAGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGACACAGTAATTTAAATTTATCCCCCCAAAGTACCCAAACCAGAT  734

seq1  AATTTCTCTGTTTAATTCAACTAATCATTGAAAGCAAAGTAATACCAGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCTGTTTAATTCAACTAATCATTGAAAGCAAAGTAATACCAGTT  784

seq1  CTACTTAAATTAACACAACTGTGAGTTTTTGCAAATAGATCCCAGAAGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAAATTAACACAACTGTGAGTTTTTGCAAATAGATCCCAGAAGGC  834

seq1  CAGCACTACCATTGACACACAAATCAGAGAAAAACACAAGAAGACAGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTACCATTGACACACAAATCAGAGAAAAACACAAGAAGACAGAAA  884

seq1  GTTGTCAGCCAATATCCTCAATGAACATTGGTGAAAAAAATTCTCAGGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAGCCAATATCCTCAATGAACATTGGTGAAAAAAATTCTCAGGAA  934

seq1  GTTAGCAAACCAAATCCAATAGCACATTTAAAAATATATTTGCCATGAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCAAACCAAATCCAATAGCACATTTAAAAATATATTTGCCATGAGC  984

seq1  AAACAAGAATTACCCTAGGGGTACAAGGATGGTTTAATAGCTACAAATCG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAATTACCCTAGGGGTACAAGGATGGTTTAATAGCTACAAATCG  1034

seq1  ACAAACAACACATCACATTGGCACGATG  1077
      ||||||||||||||||||||||||||||
seq2  ACAAACAACACATCACATTGGCACGATG  1062