BAC Information

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BAC

Clone NameB6Ng01-125A18
Chromosome16 (Build37)
Map Location 49,678,367 - 49,823,276
singlet/doubletdoublet
Overlap geneIft57, LOC667796, LOC100043767
Upstream geneTrat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061, EG216818, LOC628903
Downstream geneCd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125A18.bB6Ng01-125A18.g
ACCDH927795DH927796
length1,0891,124
definitionDH927795|Mus musculus domesticus DNA, BAC clone: B6Ng01-125A18, 5' end.DH927796|Mus musculus domesticus DNA, BAC clone: B6Ng01-125A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,822,213 - 49,823,276)(49,678,367 - 49,679,494)
sequence
gaattccacaaccaacaacatttattatctaattttagctgaagtttttg
ctagagacattttcatgtctaagccagttataaggttgtttgcacgtgga
acattaggcagatcaagttgccttgtcctgtttggttttcttgtattttt
cttttctgtagccaagatcttcaggggtcttccccatcatctgatccatt
tcactctggaagagacccaaagcctcttctccttttctgttcacacaaat
acaatgcctctttccccaaatagcatacccttggtccagtaactcgcaat
catttaaggtgcagttcgatttaatttagcagcttgactgctcttccaga
ggtttttttttaatatcataaataccacaaaacttataatcatcttcatt
ttgataattaaaacaatttaaagcaatctaaacaattattattatctttt
gagacaaggcttcttcaccacctcctgccttgacctatatgagatcaagg
cctaagtttctactatctgtctgaaataagggccttctccttacctgctg
cttctaacctacaatttgatcaaaagcctcaaattatttatctatgcata
tttaaatcctctcttcgaggaagattaatatctctgtagatacatatgtc
tcctttctctttatataacttgaattaacctaagtttctactatctgtct
gatataaggccctcctccttatctcctgctcctggccaacagttttgatc
aaaaacctctagttattcatctatgtatttaactttaaattccctctact
tactgtgtaagcctatttctaggctctaaatttgttataccaggctgaac
aattccaaaaatccagtgtagaccacactcaaagatcttgagtattgctc
tggcagacttttggggttttttttgtgttgttgttgttttcattttatcc
aaattatggggattttattattttactgatatttaattatttgcatttaa
atgtattcccctttcagtttcccttcacaaacctctatcccttccccttc
ccctgctctatgagggtgctcccaccaccaatccactca
gaattcttctgtaaagaatgaagcaggattttttaaaagaagcttccttt
aaaaagaaaaaaaagtgtattttctccctgaattaaattcacttggtcca
taaatgattacatttgggagagaatagaaaccctgggaaaaggcaataaa
gaaaaagaaaaaaagcaaccaaatctattacaacccaaaaaagaatgtca
ggagcatcataaagtgtgccaggtcctaaggaaacctcaacaaaacagtt
gcattcgggtgccagatattccaccatggtgagagacagttgggactggt
aggaggttcagcacacctcagaagctcaggaagggaagcatagcgacaga
ctaaacaatgcagatgtggtttcaggaaactagctattactaaaaccaat
aaaggactgcttcaggaagttaaaattagacttgcagaaaatagcaataa
agacaagaccgatccccttgctcaaagaataagatgttttaaaaagccat
tgagtgaaagaaggcagaggcacttgattttattttgagttcttccttca
gaaggaaaaattgttttacggtaaggtggaacgctcaagattgatggagc
caaatggttgttaagggaataccatttacatcttgtggtatcacagggct
gggtagttaaacaagcaagcagtattcctgaacaggatggtagttatgat
ttcttatccataacagcaagatgctagatagaggcagtaaccagtaacat
tcttgggaggatggcgtaactcctagctacatgtggaactcagctgtagc
aactttaagcatgtatttaaacagactccatccaaacactgtaagttaga
atatccttacagattgatgggatcagacgtctgcatagcacaagacactt
agcctgcatgtctaataagacagaactaacctgaactctgtggctctcaa
atacggaccactatcaaaggagcatatggaggctgaagctagcaccctca
acacacacatatgtagcagatacacagctacttcttcatggtggtcccaa
acaataaggaattccaagctgtttgcctgtctggttgaatatgatatctt
taactgggctggctttggctggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_49822213_49823276
seq2: B6Ng01-125A18.b_88_1131 (reverse)

seq1  TGAGTGGATGGGTGGGTGGGGAAGCACCCTCATAGAAGCAGGGGGAGGGG  50
      ||||||||| ||| ||||||  ||||||||||||| |||||||| |||||
seq2  TGAGTGGATTGGT-GGTGGG--AGCACCCTCATAG-AGCAGGGGAAGGGG  46

seq1  AAAGGGGATAGGAGGTTTGTGAAGGGGAAACTGAAAGGGGGAATAACATT  100
      ||  |||||| |||||||||||| |||||||||||| ||||||| |||||
seq2  AA--GGGATA-GAGGTTTGTGAA-GGGAAACTGAAA-GGGGAAT-ACATT  90

seq1  TAAAATGCAAATAAATAAAATAATCAGTAAAAAATAAAATAAAATCCCCA  150
      | |||||||||||| ||||   |||||||||    | |||||||||||||
seq2  T-AAATGCAAATAATTAAA--TATCAGTAAA----ATAATAAAATCCCCA  133

seq1  TAATTTGGATAAAATGAAAAACAACAACAACAACAAAAAAAACCCCAAAA  200
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  TAATTTGGATAAAATG-AAAACAACAACAAC-ACAAAAAAAACCCCAAAA  181

seq1  GTCTTGCCAGAGCAATACTCAAGATCTTTGAGTGTGGTCTACACTGGATT  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTC-TGCCAGAGCAATACTCAAGATCTTTGAGTGTGGTCTACACTGGATT  230

seq1  TTTGGAATTGTTCAGCCTGGTATAACAAATTTAGAGCCTAGAAATAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATTGTTCAGCCTGGTATAACAAATTTAGAGCCTAGAAATAGGCT  280

seq1  TACACAGTAAGTAGAGGGAATTTAAAGTTAAATACATAGATGAATAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGTAAGTAGAGGGAATTTAAAGTTAAATACATAGATGAATAACTA  330

seq1  GAGGTTTTTGATCAAAACTGTTGGCCAGGAGCAGGAGATAAGGAGGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTTTGATCAAAACTGTTGGCCAGGAGCAGGAGATAAGGAGGAGGG  380

seq1  CCTTATATCAGACAGATAGTAGAAACTTAGGTTAATTCAAGTTATATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATATCAGACAGATAGTAGAAACTTAGGTTAATTCAAGTTATATAAA  430

seq1  GAGAAAGGAGACATATGTATCTACAGAGATATTAATCTTCCTCGAAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGAGACATATGTATCTACAGAGATATTAATCTTCCTCGAAGAGA  480

seq1  GGATTTAAATATGCATAGATAAATAATTTGAGGCTTTTGATCAAATTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAAATATGCATAGATAAATAATTTGAGGCTTTTGATCAAATTGTA  530

seq1  GGTTAGAAGCAGCAGGTAAGGAGAAGGCCCTTATTTCAGACAGATAGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGAAGCAGCAGGTAAGGAGAAGGCCCTTATTTCAGACAGATAGTAG  580

seq1  AAACTTAGGCCTTGATCTCATATAGGTCAAGGCAGGAGGTGGTGAAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAGGCCTTGATCTCATATAGGTCAAGGCAGGAGGTGGTGAAGAAG  630

seq1  CCTTGTCTCAAAAGATAATAATAATTGTTTAGATTGCTTTAAATTGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCTCAAAAGATAATAATAATTGTTTAGATTGCTTTAAATTGTTTT  680

seq1  AATTATCAAAATGAAGATGATTATAAGTTTTGTGGTATTTATGATATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCAAAATGAAGATGATTATAAGTTTTGTGGTATTTATGATATTAA  730

seq1  AAAAAAACCTCTGGAAGAGCAGTCAAGCTGCTAAATTAAATCGAACTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCTCTGGAAGAGCAGTCAAGCTGCTAAATTAAATCGAACTGCA  780

seq1  CCTTAAATGATTGCGAGTTACTGGACCAAGGGTATGCTATTTGGGGAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAATGATTGCGAGTTACTGGACCAAGGGTATGCTATTTGGGGAAAG  830

seq1  AGGCATTGTATTTGTGTGAACAGAAAAGGAGAAGAGGCTTTGGGTCTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTGTATTTGTGTGAACAGAAAAGGAGAAGAGGCTTTGGGTCTCTT  880

seq1  CCAGAGTGAAATGGATCAGATGATGGGGAAGACCCCTGAAGATCTTGGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTGAAATGGATCAGATGATGGGGAAGACCCCTGAAGATCTTGGCT  930

seq1  ACAGAAAAGAAAAATACAAGAAAACCAAACAGGACAAGGCAACTTGATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAGAAAAATACAAGAAAACCAAACAGGACAAGGCAACTTGATCT  980

seq1  GCCTAATGTTCCACGTGCAAACAACCTTATAACTGGCTTAGACATGAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATGTTCCACGTGCAAACAACCTTATAACTGGCTTAGACATGAAAA  1030

seq1  TGTCTCTAGCAAAA  1064
      ||||||||||||||
seq2  TGTCTCTAGCAAAA  1044

seq1: chr16_49678367_49679494
seq2: B6Ng01-125A18.g_67_1190

seq1  GAATTCTTCTGTAAAGAATGAAGCAGGATTTTTTAAAAGAAGCTTCCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGTAAAGAATGAAGCAGGATTTTTTAAAAGAAGCTTCCTTT  50

seq1  AAAAAGAAAAAAAAGTGTATTTTCTCCCTGAATTAAATTCACTTGGTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAAAAAAGTGTATTTTCTCCCTGAATTAAATTCACTTGGTCCA  100

seq1  TAAATGATTACATTTGGGAGAGAATAGAAACCCTGGGAAAAGGCAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATTACATTTGGGAGAGAATAGAAACCCTGGGAAAAGGCAATAAA  150

seq1  GAAAAAGAAAAAAAGCAACCAAATCTATTACAACCCAAAAAAGAATGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAAAAAAAGCAACCAAATCTATTACAACCCAAAAAAGAATGTCA  200

seq1  GGAGCATCATAAAGTGTGCCAGGTCCTAAGGAAACCTCAACAAAACAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATCATAAAGTGTGCCAGGTCCTAAGGAAACCTCAACAAAACAGTT  250

seq1  GCATTCGGGTGCCAGATATTCCACCATGGTGAGAGACAGTTGGGACTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCGGGTGCCAGATATTCCACCATGGTGAGAGACAGTTGGGACTGGT  300

seq1  AGGAGGTTCAGCACACCTCAGAAGCTCAGGAAGGGAAGCATAGCGACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTTCAGCACACCTCAGAAGCTCAGGAAGGGAAGCATAGCGACAGA  350

seq1  CTAAACAATGCAGATGTGGTTTCAGGAAACTAGCTATTACTAAAACCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAATGCAGATGTGGTTTCAGGAAACTAGCTATTACTAAAACCAAT  400

seq1  AAAGGACTGCTTCAGGAAGTTAAAATTAGACTTGCAGAAAATAGCAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACTGCTTCAGGAAGTTAAAATTAGACTTGCAGAAAATAGCAATAA  450

seq1  AGACAAGACCGATCCCCTTGCTCAAAGAATAAGATGTTTTAAAAAGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGACCGATCCCCTTGCTCAAAGAATAAGATGTTTTAAAAAGCCAT  500

seq1  TGAGTGAAAGAAGGCAGAGGCACTTGATTTTATTTTGAGTTCTTCCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAAAGAAGGCAGAGGCACTTGATTTTATTTTGAGTTCTTCCTTCA  550

seq1  GAAGGAAAAATTGTTTTACGGTAAGGTGGAACGCTCAAGATTGATGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAAATTGTTTTACGGTAAGGTGGAACGCTCAAGATTGATGGAGC  600

seq1  CAAATGGTTGTTAAGGGAATACCATTTACATCTTGTGGTATCACAGGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGTTGTTAAGGGAATACCATTTACATCTTGTGGTATCACAGGGCT  650

seq1  GGGTAGTTAAACAAGCAAGCAGTATTCCTGAACAGGATGGTAGTTATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGTTAAACAAGCAAGCAGTATTCCTGAACAGGATGGTAGTTATGAT  700

seq1  TTCTTATCCATAACAGCAAGATGCTAGATAGAGGCAGTAACCAGTAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATCCATAACAGCAAGATGCTAGATAGAGGCAGTAACCAGTAACAT  750

seq1  TCTTGGGAGGATGGCGTAACTCCTAGCTACATGTGGAACTCAGCTGTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGAGGATGGCGTAACTCCTAGCTACATGTGGAACTCAGCTGTAGC  800

seq1  AACTTTAAGCATGTATTTAAACAGACTCCATCCAAACACTGTAAGTTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAAGCATGTATTTAAACAGACTCCATCCAAACACTGTAAGTTAGA  850

seq1  ATATCCTTACAGATTGATGGGATCAGACGTCTGCATAGCAACAAGACACT  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATATCCTTACAGATTGATGGGATCAGACGTCTGCATAGC-ACAAGACACT  899

seq1  TAGCCTGCATGTCTAATAAGACAGAACTAACCTGAACCCTTGTGGCTCTC  950
      ||||||||||||||||||||||||||||||||||||| | ||||||||||
seq2  TAGCCTGCATGTCTAATAAGACAGAACTAACCTGAACTC-TGTGGCTCTC  948

seq1  AAATACGGAACCACTAATCAAA-GAGCATATGGAGGCTGAAGCTAGCCAC  999
      |||||||| |||||| |||||| ||||||||||||||||||||||| |||
seq2  AAATACGG-ACCACT-ATCAAAGGAGCATATGGAGGCTGAAGCTAG-CAC  995

seq1  CCCCAACACACACATATGTAGCAGATACACAGCTACTTCTTCATGTGGGT  1049
      || ||||||||||||||||||||||||||||||||||||||||||  |||
seq2  CCTCAACACACACATATGTAGCAGATACACAGCTACTTCTTCATGGTGGT  1045

seq1  CCCAAACAATAAGGGAAATCCCAAAAGCTG-TTGCCTGTCT-GTTGGATA  1097
      ||||||||||||||  ||| ||  |||||| |||||||||| |||| |||
seq2  CCCAAACAATAAGG--AATTCC--AAGCTGTTTGCCTGTCTGGTTGAATA  1091

seq1  TGATCT-TTTAGCTGGGCT-GCCTTGGCTGGCC  1128
      |||| | |||| ||||||| || ||||||||||
seq2  TGATATCTTTAACTGGGCTGGCTTTGGCTGGCC  1124