BAC Information

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BAC

Clone NameB6Ng01-125J23
Chromosome16 (Build37)
Map Location 52,709,943 - 52,847,291
singlet/doubletdoublet
Overlap genenone
Upstream geneCblb, Alcam
Downstream geneLOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125J23.bB6Ng01-125J23.g
ACCDH928207DH928208
length1,152136
definitionDH928207|Mus musculus domesticus DNA, BAC clone: B6Ng01-125J23, 5' end.DH928208|Mus musculus domesticus DNA, BAC clone: B6Ng01-125J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,709,943 - 52,711,100)(52,847,156 - 52,847,291)
sequence
gaattctctggtttcaaagcttgagtctccctggtatggtagtacatgct
gttaatgctggcactcagtacacagcagcagttggatctctaagaatggt
caaagttccaggccatcctagacaataaagcaagaacctgtctcaaatta
attaaacaaaacaaacaagcaaaaccatatttctcagaagataatacaga
gttaacaagctggagagatggttcagcagttaagagaacttgttactctt
gcataagacttgggttcagtgtcagtttccaactttcacacagtgtcttt
aactccacaaccccagttccagaggatccaacaacttctgatctctatga
gcagagaatacatgtggtgcacacatgcacacatgcagtaaacaaaccca
caaaaacaaacacaaataacctttaatttataaagagaaagataatatag
aactggaatattgtttccaaaacttggaggttaatgcagattcttctcta
aagggaggctagataaagtcctgataagaaaaaactgaaattcctgggtc
gaagttgagcaagtgtacttggtccagtcaatgaaatgtgtaaaaaggat
gtctagattcatgtagaacttcatctttaatgcatagctaatttctataa
aaaggaagtctggttgcaaaaaagaaggaagaacaatacataagacaaag
taaacttttccagttgtaatatagaatgcttttgataattcattttctta
ttctctcacattgtcttgaggagattcagcaaagctttatattttgttca
gcttctaaaaaagcttatattttaatagtggatatgaaaaatcaaatttt
attttttttctaggtcaaggttttttatttggataatttttcttaagaat
agtatgttttcatggttctaatgactgctatatccagaagaagccattca
tagcactcttcacattctccaatgggaacaatttttcacagtcttctcac
ttgagcagatgtgagctttttttgttttcgtttgttttttgtttttgttt
tgagacaggctttcactgtatagctggaatgttctggactcaattgtaga
caaactgccttgaactcaagaaatctggctgccctgcaatccgaagtgct
gg
tgttatttttagtttaaaaacacatatatgtgtaaacacacacacacata
tatatgttgtgtaaatgtatatatatgtgtgtgtgtatatatatatgtgt
gtgtgtatatatatatgtgtgtgtgtgtgagtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_52709943_52711100
seq2: B6Ng01-125J23.b_48_1199

seq1  GAATTCTCTGGTTTCAAAGCTTGAGTCTCCCTGGTATGGTAGTACATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGTTTCAAAGCTTGAGTCTCCCTGGTATGGTAGTACATGCT  50

seq1  GTTAATGCTGGCACTCAGTACACAGCAGCAGTTGGATCTCTAAGAATGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGCTGGCACTCAGTACACAGCAGCAGTTGGATCTCTAAGAATGGT  100

seq1  CAAAGTTCCAGGCCATCCTAGACAATAAAGCAAGAACCTGTCTCAAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTCCAGGCCATCCTAGACAATAAAGCAAGAACCTGTCTCAAATTA  150

seq1  ATTAAACAAAACAAACAAGCAAAACCATATTTCTCAGAAGATAATACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACAAAACAAACAAGCAAAACCATATTTCTCAGAAGATAATACAGA  200

seq1  GTTAACAAGCTGGAGAGATGGTTCAGCAGTTAAGAGAACTTGTTACTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACAAGCTGGAGAGATGGTTCAGCAGTTAAGAGAACTTGTTACTCTT  250

seq1  GCATAAGACTTGGGTTCAGTGTCAGTTTCCAACTTTCACACAGTGTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGACTTGGGTTCAGTGTCAGTTTCCAACTTTCACACAGTGTCTTT  300

seq1  AACTCCACAACCCCAGTTCCAGAGGATCCAACAACTTCTGATCTCTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCACAACCCCAGTTCCAGAGGATCCAACAACTTCTGATCTCTATGA  350

seq1  GCAGAGAATACATGTGGTGCACACATGCACACATGCAGTAAACAAACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAATACATGTGGTGCACACATGCACACATGCAGTAAACAAACCCA  400

seq1  CAAAAACAAACACAAATAACCTTTAATTTATAAAGAGAAAGATAATATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAAACACAAATAACCTTTAATTTATAAAGAGAAAGATAATATAG  450

seq1  AACTGGAATATTGTTTCCAAAACTTGGAGGTTAATGCAGATTCTTCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAATATTGTTTCCAAAACTTGGAGGTTAATGCAGATTCTTCTCTA  500

seq1  AAGGGAGGCTAGATAAAGTCCTGATAAGAAAAAACTGAAATTCCTGGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGGCTAGATAAAGTCCTGATAAGAAAAAACTGAAATTCCTGGGTC  550

seq1  GAAGTTGAGCAAGTGTACTTGGTCCAGTCAATGAAATGTGTAAAAAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGAGCAAGTGTACTTGGTCCAGTCAATGAAATGTGTAAAAAGGAT  600

seq1  GTCTAGATTCATGTAGAACTTCATCTTTAATGCATAGCTAATTTCTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGATTCATGTAGAACTTCATCTTTAATGCATAGCTAATTTCTATAA  650

seq1  AAAGGAAGTCTGGTTGCAAAAAAGAAGGAAGAACAATACATAAGACAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGTCTGGTTGCAAAAAAGAAGGAAGAACAATACATAAGACAAAG  700

seq1  TAAACTTTTCCAGTTGTAATATAGAATGC-TTTGATAATTCATTTTCTTA  749
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAAACTTTTCCAGTTGTAATATAGAATGCTTTTGATAATTCATTTTCTTA  750

seq1  TTCTCTCACATTGTCTTGAGGAGATTCAGCAAAGCTTTATATTTTGTTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCACATTGTCTTGAGGAGATTCAGCAAAGCTTTATATTTTGTTCA  800

seq1  GCTTCTAAAAAAGCTTATATTTTAATAGTGGATATGAAAAATCAAATTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAAAAAAGCTTATATTTTAATAGTGGATATGAAAAATCAAATTTT  850

seq1  A-TTTTTTTCTAGGTCAAGGTTTTTTATTTGGATAATTTTTCTTAAGAAT  898
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTCTAGGTCAAGGTTTTTTATTTGGATAATTTTTCTTAAGAAT  900

seq1  AGTATGTTTTCATGGTTCTAATGACTGCTATATCCAGAAGAAAGCCATTC  948
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGTATGTTTTCATGGTTCTAATGACTGCTATATCCAGAAG-AAGCCATTC  949

seq1  ATAGCACTCTTCCACATTCTCCAATGGGAACAATTTTTCCACAGTCTTCT  998
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  ATAGCACTCTT-CACATTCTCCAATGGGAACAATTTTT-CACAGTCTTCT  997

seq1  CACTTGAGCAGATGTGAGCTTTTTTTGTTTTTCGTTTG-TTTTTGTTTTT  1047
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  CACTTGAGCAGATGTGAGCTTTTTTTG-TTTTCGTTTGTTTTTTGTTTTT  1046

seq1  GTTTTTGAGACAGGGTTTCACTGTATAGGCCTGG-ATGTCCTGGAACTCA  1096
      | |||||||||||| |||||||||||||  |||| |||| |||| |||||
seq2  G-TTTTGAGACAGGCTTTCACTGTATAG--CTGGAATGTTCTGG-ACTCA  1092

seq1  CTTTGTAGACCAGACTGGCCTTGAACTC-AGAAATCTGCCTGCCTCTGC-  1144
        ||||||| || ||| ||||||||||| ||||||||| ||||| |||| 
seq2  -ATTGTAGA-CAAACT-GCCTTGAACTCAAGAAATCTGGCTGCC-CTGCA  1138

seq1  ATCCCGAGTGCTGG  1158
      ||||  ||||||||
seq2  ATCCGAAGTGCTGG  1152

seq1: chr16_52847156_52847291
seq2: B6Ng01-125J23.g_72_207 (reverse)

seq1  ACACACACACACACACACACATATATATATACACACACACATATATATAT  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCACACACACACACATATATATATACACACACACATATATATAT  50

seq1  ACACACACACATATATATACATTTACACAACATATATATGTGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACATATATATACATTTACACAACATATATATGTGTGTGTGTG  100

seq1  TTTACACATATATGTGTTTTTAAACTAAAAATAACA  136
      ||||||||||||||||||||||||||||||||||||
seq2  TTTACACATATATGTGTTTTTAAACTAAAAATAACA  136