BAC Information

Click to search

BAC

Clone NameB6Ng01-125M03
Chromosome16 (Build37)
Map Location 68,589,462 - 68,711,555
singlet/doubletdoublet
Overlap genenone
Upstream geneCadm2, EG626609
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125M03.bB6Ng01-125M03.g
ACCDH928303DH928304
length1,233978
definitionDH928303|Mus musculus domesticus DNA, BAC clone: B6Ng01-125M03, 5' end.DH928304|Mus musculus domesticus DNA, BAC clone: B6Ng01-125M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,589,462 - 68,590,802)(68,710,572 - 68,711,555)
sequence
gaattcactctatagagcaggctggcctcgaactcataaatccacctgcc
tctgctacccaactgctggaattaaaggtgtgtaccaccactgcccggca
aggttgatttttaaatttggcataagaagaaatttaatccagtatcattg
ctgttctgatcactctaggtcagtgtgatcaagctggaatagagacatga
cgttagtacacatctttaatccaaaacactgtcatctaattgagggaaac
agaaataaacaaattggagatttgataggataggatatccccaactctca
tgagaacagtacaaggaagataggacttaacagcagtgcagtgaaaaaga
gttaattttgtgggtttcagagagagatttccaagcagagcaattcattc
agaagctaagagaagccaacttgaatcagtcagcttagagagaagtctga
accagaacaactgagttgaagcagccagttagaatttggaaaggatgaac
ttattcagcagtaagcctctgagatgaagattgcataagacaaattactt
ttacagcttaatcagcagaccaatttgttttcaaaataatcataagaatg
tagttattttgatatatttactttacccctttgtttcttatggaataact
tagttatgctcctggaccactgtgaactaataatgaataaatggtgaaaa
tcctttcacctggacactggagaaactgagatgacaacagtcatatattt
gtgtaactatatttaaactcccataagcatatattataaataagcatata
ttatatagtatatattatgtatatacttattgcctaaactagagagctaa
tataataaatatgaagaaattaatattgcactatagtctatatataatca
agtcctaaaataaacttaaagaatttgctcagtaaaagctagtggtaatg
ttcatcaacttaataataaaaaaaaaacttattctataaaaaatatgtca
aaacactaggaaatagttttagtatatagggaaagaggatgtctcaatag
tatcagtgagatattgctatttcaagatggcatgaattgtgctaatcttt
caattatatattggtgaaacccgagtttaacttaggtatgtgaatttagc
ttgaacagggaggttctattcactccttcatatagagaactggagtctag
accgtggacactctacttttttaaaattatgaa
gaattcctttagtaatcataagctattgcaaattaagattctctgctgat
agttgagagatgcaatctcattcaaatggaaaggaaaataactgtagaaa
gtggtcttggtgttttatttttagtcatgaattcctctttctcctccttt
atgagtcaacttgatactttttaaataatagttttagcaactactaatga
taagaggtactagatgtttcccctacttatgatttaatttgtcattttta
ccattatgaatgtttttaatattacaaatgtacttgatccaaactatgaa
actgaaaaaaagtaaacaacttaactgatgacatgttttacagctaagaa
accagtaattgtgagtaagaaattacttaggttttggtgcatgtaacagg
aaactccaagtttcaatgaatgtcaactatctatacatacattttattaa
ggattaacattcatattttagaataatatttggataatggaaattcccac
aaagacaggtatagcattttttttgaaaatcttaaatattttccatagag
attttccaagaatcttttggcataatgttagtgctgtttcagaaaacaga
ctagtatattattagaagcggtattgtaatatatgtaatccaatttttgt
gattattaggaataatagagtttaactaacaaagattaataaataacact
ccacttgttaattgatatatatacatagtactaatgctaactcagttctt
gagatacaaaataagttcctaagtaaaccatttcactcttaatacatggg
caggagggcaagtactaaaagcaaggaagtagctttgtgtgaatatgagt
gtgtgtctgtgtgtgcatgtcccgacaggttaaacctatgctctataacc
tcaaggcatttattttaatgaaaacaaggaatcatgtatgtatgtgtgta
tattatatatatatatatatataatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_68589462_68590802
seq2: B6Ng01-125M03.b_51_1283

seq1  GAATTCACTCTATAGAGCAGGCTGGCCTCGAACTCATAAATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTATAGAGCAGGCTGGCCTCGAACTCATAAATCCACCTGCC  50

seq1  TCTGCTACCCAACTGCTGGAATTAAAGGTGTGTACCACCACTGCCCGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTACCCAACTGCTGGAATTAAAGGTGTGTACCACCACTGCCCGGCA  100

seq1  AGGTTGATTTTTAAATTTGGCATAAGAAGAAATTTAATCCAGTATCATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGATTTTTAAATTTGGCATAAGAAGAAATTTAATCCAGTATCATTG  150

seq1  CTGTTCTGATCACTCTAGGTCAGTGTGATCAAGCTGGAATAGAGACATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGATCACTCTAGGTCAGTGTGATCAAGCTGGAATAGAGACATGA  200

seq1  CGTTAGTACACATCTTTAATCCAAAACACTGTCATCTAATTGAGGGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGTACACATCTTTAATCCAAAACACTGTCATCTAATTGAGGGAAAC  250

seq1  AGAAATAAACAAATTGGAGATTTGATAGGATAGGATATCCCCAACTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAACAAATTGGAGATTTGATAGGATAGGATATCCCCAACTCTCA  300

seq1  TGAGAACAGTACAAGGAAGATAGGACTTAACAGCAGTGCAGTGAAAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACAGTACAAGGAAGATAGGACTTAACAGCAGTGCAGTGAAAAAGA  350

seq1  GTTAATTTTGTGGGTTTCAGAGAGAGATTTCCAAGCAGAGCAATTCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTTGTGGGTTTCAGAGAGAGATTTCCAAGCAGAGCAATTCATTC  400

seq1  AGAAGCTAAGAGAAGCCAACTTGAATCAGTCAGCTTAGAGAGAAGTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTAAGAGAAGCCAACTTGAATCAGTCAGCTTAGAGAGAAGTCTGA  450

seq1  ACCAGAACAACTGAGTTGAAGCAGCCAGTTAGAATTTGGAAAGGATGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAACAACTGAGTTGAAGCAGCCAGTTAGAATTTGGAAAGGATGAAC  500

seq1  TTATTCAGCAGTAAGCCTCTGAGATGAAGATTGCATAAGACAAATTACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGCAGTAAGCCTCTGAGATGAAGATTGCATAAGACAAATTACTT  550

seq1  TTACAGCTTAATCAGCAGACCAATTTGTTTTCAAAATAATCATAAGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCTTAATCAGCAGACCAATTTGTTTTCAAAATAATCATAAGAATG  600

seq1  TAGTTATTTTGATATATTTACTTTACCCCTTTGTTTCTTATGGAATAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATTTTGATATATTTACTTTACCCCTTTGTTTCTTATGGAATAACT  650

seq1  TAGTTATGCTCCTGGACCACTGTGAACTAATAATGAATAAATGGTGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATGCTCCTGGACCACTGTGAACTAATAATGAATAAATGGTGAAAA  700

seq1  TCCTTTCACCTGGACACTGGAGAAACTGAGATGACAACAGTCATATATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCACCTGGACACTGGAGAAACTGAGATGACAACAGTCATATATTT  750

seq1  GTGTAACTATATTTAAACTCCCATAAGCATATATTATAAATAAGCATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACTATATTTAAACTCCCATAAGCATATATTATAAATAAGCATATA  800

seq1  TTATATAGTATATATTATGTATATACTTATTGCCTAAACTAGAGAGCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAGTATATATTATGTATATACTTATTGCCTAAACTAGAGAGCTAA  850

seq1  TATAATAAATATGAAGAAATTAATATTGCACTATAGTCTATATATAATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAATATGAAGAAATTAATATTGCACTATAGTCTATATATAATCA  900

seq1  AGTCCTAAAAATAAACTTAAAGAATTTGCTCAGTAAAAGCTAGTGGTAAT  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCT-AAAATAAACTTAAAGAATTTGCTCAGTAAAAGCTAGTGGTAAT  949

seq1  GTTTCATCAAACTTAATAATTAAAAAAAAAACTTATTCTATAAAAAATAT  1000
      | |||||| |||||||||| ||||||||||||||||||||||||||||| 
seq2  G-TTCATC-AACTTAATAA-TAAAAAAAAAACTTATTCTATAAAAAATA-  995

seq1  TGTCAAAACACTAGGAAAATAGGTTTTTAGTATATA-GGATAGAGGATGT  1049
      ||||||||||||||| ||||||  |||||||||||| ||| |||||||||
seq2  TGTCAAAACACTAGG-AAATAG--TTTTAGTATATAGGGAAAGAGGATGT  1042

seq1  CTCAATAGTATCAGTGAGATTAATTGCTATTTCACAGATTGGCATAGAAT  1099
      ||||||||||||||||||||  |||||||||||| ||| |||||| ||||
seq2  CTCAATAGTATCAGTGAGAT--ATTGCTATTTCA-AGA-TGGCAT-GAAT  1087

seq1  TGTTGCTAATCTTTTCAATTATTATATTGTGAAAACAACAGAGGTTTTAA  1149
      || |||||||| ||||||||| |||||||   ||||  | |||  |||||
seq2  TG-TGCTAATC-TTTCAATTA-TATATTGGTGAAAC--CCGAG--TTTAA  1130

seq1  ACCTTAAGTTATGTGAATATTTAGATTTTAAACAGCAGATGTATCATATT  1199
        ||| || |||||||  ||||||   || |||||  || || || ||||
seq2  --CTT-AGGTATGTGA--ATTTAG--CTTGAACAG-GGAGGT-TC-TATT  1170

seq1  CATCTACATTTTAATATAGA-AACTGAAATCTCTTAAACATTGACAATTC  1248
      || || |   || ||||||| ||||| | ||   || ||  ||   | ||
seq2  CA-CTCC---TTCATATAGAGAACTGGAGTC---TAGACCGTGGACACTC  1213

seq1  TACTTTTTTAAAATATAGCACGTGAAATTTATCTCTCTTGCATATACAAT  1298
      |||||||||||||| ||     ||||                        
seq2  TACTTTTTTAAAAT-TA-----TGAA------------------------  1233

seq1  GTTGGTACTATTTTTATTCAGTATATGTTTTGTAAATTATGAA  1341
                                                 
seq2  -------------------------------------------  1233

seq1: chr16_68710572_68711555
seq2: B6Ng01-125M03.g_68_1045 (reverse)

seq1  TATATATATATATATATATATATATATATATACACACATACATAACAATT  50
      ||||| |||||||||||||||||||| |||||||||||||||| |||  |
seq2  TATAT-TATATATATATATATATATA-ATATACACACATACAT-ACA--T  45

seq1  GATTCCTTGTTTTTCCTTAAAATAAATGCCTTGAGGTTATAGAGCATAGG  100
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  GATTCCTTG-TTTTCATTAAAATAAATGCCTTGAGGTTATAGAGCATAGG  94

seq1  TTTAACCTGTCGGGACATGCACACACAGACACACACTCATATTCACACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCTGTCGGGACATGCACACACAGACACACACTCATATTCACACAA  144

seq1  AGCTACTTCCTTGCTTTTAGTACTTGCCCTCCTGCCCATGTATTAAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTTCCTTGCTTTTAGTACTTGCCCTCCTGCCCATGTATTAAGAGT  194

seq1  GAAATGGTTTACTTAGGAACTTATTTTGTATCTCAAGAACTGAGTTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGTTTACTTAGGAACTTATTTTGTATCTCAAGAACTGAGTTAGCA  244

seq1  TTAGTACTATGTATATATATCAATTAACAAGTGGAGTGTTATTTATTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTACTATGTATATATATCAATTAACAAGTGGAGTGTTATTTATTAAT  294

seq1  CTTTGTTAGTTAAACTCTATTATTCCTAATAATCACAAAAATTGGATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTAGTTAAACTCTATTATTCCTAATAATCACAAAAATTGGATTAC  344

seq1  ATATATTACAATACCGCTTCTAATAATATACTAGTCTGTTTTCTGAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTACAATACCGCTTCTAATAATATACTAGTCTGTTTTCTGAAACA  394

seq1  GCACTAACATTATGCCAAAAGATTCTTGGAAAATCTCTATGGAAAATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAACATTATGCCAAAAGATTCTTGGAAAATCTCTATGGAAAATATT  444

seq1  TAAGATTTTCAAAAAAAATGCTATACCTGTCTTTGTGGGAATTTCCATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTTCAAAAAAAATGCTATACCTGTCTTTGTGGGAATTTCCATTA  494

seq1  TCCAAATATTATTCTAAAATATGAATGTTAATCCTTAATAAAATGTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATATTATTCTAAAATATGAATGTTAATCCTTAATAAAATGTATGT  544

seq1  ATAGATAGTTGACATTCATTGAAACTTGGAGTTTCCTGTTACATGCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGTTGACATTCATTGAAACTTGGAGTTTCCTGTTACATGCACCA  594

seq1  AAACCTAAGTAATTTCTTACTCACAATTACTGGTTTCTTAGCTGTAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAAGTAATTTCTTACTCACAATTACTGGTTTCTTAGCTGTAAAAC  644

seq1  ATGTCATCAGTTAAGTTGTTTACTTTTTTTCAGTTTCATAGTTTGGATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATCAGTTAAGTTGTTTACTTTTTTTCAGTTTCATAGTTTGGATCA  694

seq1  AGTACATTTGTAATATTAAAAACATTCATAATGGTAAAAATGACAAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATTTGTAATATTAAAAACATTCATAATGGTAAAAATGACAAATTA  744

seq1  AATCATAAGTAGGGGAAACATCTAGTACCTCTTATCATTAGTAGTTGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAAGTAGGGGAAACATCTAGTACCTCTTATCATTAGTAGTTGCTA  794

seq1  AAACTATTATTTAAAAAGTATCAAGTTGACTCATAAAGGAGGAGAAAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTATTTAAAAAGTATCAAGTTGACTCATAAAGGAGGAGAAAGAG  844

seq1  GAATTCATGACTAAAAATAAAACACCAAGACCACTTTCTACAGTTATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACTAAAAATAAAACACCAAGACCACTTTCTACAGTTATTTT  894

seq1  CCTTTCCATTTGAATGAGATTGCATCTCTCAACTATCAGCAGAGAATCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCATTTGAATGAGATTGCATCTCTCAACTATCAGCAGAGAATCTT  944

seq1  AATTTGCAATAGCTTATGATTACTAAAGGAATTC  984
      ||||||||||||||||||||||||||||||||||
seq2  AATTTGCAATAGCTTATGATTACTAAAGGAATTC  978