BAC Information

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BAC

Clone NameB6Ng01-126I17
Chromosome16 (Build37)
Map Location 18,239,338 - 18,382,630
singlet/doubletdoublet
Overlap geneRanbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf
Upstream geneHic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8
Downstream geneComt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126I17.bB6Ng01-126I17.g
ACCDH928888DH928889
length1,213394
definitionDH928888|Mus musculus domesticus DNA, BAC clone: B6Ng01-126I17, 5' end.DH928889|Mus musculus domesticus DNA, BAC clone: B6Ng01-126I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,239,338 - 18,240,571)(18,382,231 - 18,382,630)
sequence
gaattcaaggtccaaactcctagagtgctatttgaagatgtattggggca
cctaatggcttccaataggagagtgtagggctagactcagttacactatg
gcacagtaccatggtggcctttccctccactgagcttggagctgctctat
taaccagagccaatcaaaaccagtttttcctatagccagatgtttagcta
cctaccacctcccttcaccaagatgaaagcacataatagtctcccttcac
ctctctttctctctcacacacacacagaccctatacaaaagcacaaagca
atagttctagcagcaaggaagcagcccaccttggccctgaatgccagttg
cagccacacacactgtggcctccagcaccagccggtaccgtagtatctgg
tccctaagagccacagaaggacacaccattttgacaaactggttttctcc
taggagaaaatcaggctggtagacaggtggccaaggagggctccaggcat
agacaccttccccacccctcacatagccttgtcagctggtccaggttttc
aaaggcattttttattcactatttttgatgactataaataagtgtttcca
ctatggaaaagaaagttagcacagtacattttcatgactggggaatggat
ttctgaagtcatgttcaatggtgtcaaaacttggaggaaaaaaaagttaa
aaaaaaaacaaaacaaaaaaacaacctgaaaattggaattcagttcttta
taaagtcccttgtaaaaacaaaacagaaaaacaaaccttaaagggtaggg
caaatttttaaaaagaaaaggaaaggaaaaagacagagtgattcattgtt
tctcctcagacttctcttcagcctcctctctggcctccctcactgaaagg
gcttccagcttctcggccaccttttcggcattatcatttttgcctggtcc
tgcaaaaacaggcaattgcagtaagacaacagagaagtccggctgtgaga
ctacactgctcttggcacttacctagtgcagagcccgacctgtccccagc
atcaccaccactctccccagaatggtcagcagctgctgtgaatgttggtc
acttactactcagcccatctgtcccagaagaaacgaaaaacatttgtgaa
aaatgagaaatctacctttgttgttgttgctccattccgaaacagttctc
tgtgcagaccctg
acagacatccacctgcctttgcctcctgagtgctggcattaaagatgtgt
gccaccatgccttaaggtgctcttacataaaaaaaacaaaaactaaccag
ctgaaagtggataaaatgatgtacacagatgacatgtctaaagaggcata
ggaatgactttgtatacacgtaggcacaggaaaactataaggacccacat
cctggggggtcacagccgtagccgggggtgggggtgggggtcacagctgc
tgctggagctcctcagctccagttttgcacatatgagaagcagagttatt
atggatataaacaactctgagaaagggagaggcagtcatctttccaacca
ggcactgaagactccaagcctgcttaggaagggggagggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_18239338_18240571
seq2: B6Ng01-126I17.b_46_1258

seq1  GAATTCAAGGTCCAAACTCCTAGAGTGCTATTTGAAGATGTATTGGGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCCAAACTCCTAGAGTGCTATTTGAAGATGTATTGGGGCA  50

seq1  CCTAATGGCTTCCAATAGGAGAGTGTAGGGCTAGACTCAGTTACACTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGGCTTCCAATAGGAGAGTGTAGGGCTAGACTCAGTTACACTATG  100

seq1  GCACAGTACCATGGTGGCCTTTCCCTCCACTGAGCTTGGAGCTGCTCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTACCATGGTGGCCTTTCCCTCCACTGAGCTTGGAGCTGCTCTAT  150

seq1  TAACCAGAGCCAATCAAAACCAGTTTTTCCTATAGCCAGATGTTTAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGAGCCAATCAAAACCAGTTTTTCCTATAGCCAGATGTTTAGCTA  200

seq1  CCTACCACCTCCCTTCACCAAGATGAAAGCACATAATAGTCTCCCTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCACCTCCCTTCACCAAGATGAAAGCACATAATAGTCTCCCTTCAC  250

seq1  CTCTCTTTCTCTCTCACACACACACAGACCCTATACAAAAGCACAAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTCTCTCTCACACACACACAGACCCTATACAAAAGCACAAAGCA  300

seq1  ATAGTTCTAGCAGCAAGGAAGCAGCCCACCTTGGCCCTGAATGCCAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTAGCAGCAAGGAAGCAGCCCACCTTGGCCCTGAATGCCAGTTG  350

seq1  CAGCCACACACACTGTGGCCTCCAGCACCAGCCGGTACCGTAGTATCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACACACACTGTGGCCTCCAGCACCAGCCGGTACCGTAGTATCTGG  400

seq1  TCCCTAAGAGCCACAGAAGGACACACCATTTTGACAAACTGGTTTTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAGAGCCACAGAAGGACACACCATTTTGACAAACTGGTTTTCTCC  450

seq1  TAGGAGAAAATCAGGCTGGTAGACAGGTGGCCAAGGAGGGCTCCAGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAAAATCAGGCTGGTAGACAGGTGGCCAAGGAGGGCTCCAGGCAT  500

seq1  AGACACCTTCCCCACCCCTCACATAGCCTTGTCAGCTGGTCCAGGTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCTTCCCCACCCCTCACATAGCCTTGTCAGCTGGTCCAGGTTTTC  550

seq1  AAAGGCATTTTTTATTCACTATTTTTGATGACTATAAATAAGTGTTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATTTTTTATTCACTATTTTTGATGACTATAAATAAGTGTTTCCA  600

seq1  CTATGGAAAAGAAAGTTAGCACAGTACATTTTCATGACTGGGGAATGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAAAAGAAAGTTAGCACAGTACATTTTCATGACTGGGGAATGGAT  650

seq1  TTCTGAAGTCATGTTCAATGGTGTCAAAACTTGGAGGAAAAAAAAGTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTCATGTTCAATGGTGTCAAAACTTGGAGGAAAAAAAAGTTAA  700

seq1  AAAAAAAACAAAACAAAAAAACAACCTGAAAATTGGAATTCAGTTCTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACAAAACAAAAAAACAACCTGAAAATTGGAATTCAGTTCTTTA  750

seq1  TAAAGTCCCTTGTAAAAACAAAACAGAAAAACAAACCTTAAAGGGTAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCCCTTGTAAAAACAAAACAGAAAAACAAACCTTAAAGGGTAGGG  800

seq1  CAAATTTTTAAAAAGAAAAGGAAAGGAAAAAGACAGAGTGATTCATTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTTAAAAAGAAAAGGAAAGGAAAAAGACAGAGTGATTCATTGTT  850

seq1  TCTCCTCAGACTTCTCTTCAGCCTCCTCTCTGGCCTCCCTCACTGAAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCAGACTTCTCTTCAGCCTCCTCTCTGGCCTCCCTCACTGAAAGG  900

seq1  GCTTCCAGCTTCTCGGCCACCTTTTCGGCATTATCATTTTTGCCTGGTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAGCTTCTCGGCCACCTTTTCGGCATTATCATTTTTGCCTGGTCC  950

seq1  TGCAAAAACAGGCAATTGCAGTAAGACAACAGAGAAGTCCGGCTGTGAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAACAGGCAATTGCAGTAAGACAACAGAGAAGTCCGGCTGTGAGA  1000

seq1  CTACACTGCTCTTGGCACTTACCTAGTGCAGAGGCCCGACCTGTTCCCCA  1050
      |||||||||||||||||||||||||||||||| |||||||||||  ||| 
seq2  CTACACTGCTCTTGGCACTTACCTAGTGCAGA-GCCCGACCTGT--CCCC  1047

seq1  AGCATCACCCACCACTCTCCCCAGATGGGTCCAGCAAGCTGCTGGTGATG  1100
      ||||||| |||||||||||||||||  ||| |||| ||||||||   |||
seq2  AGCATCA-CCACCACTCTCCCCAGAATGGT-CAGC-AGCTGCTGTGAATG  1094

seq1  TGTGGTCACTTACTAACCCAGGCCCCATCTGTCCCAGAAGAACAGAAAAC  1150
      | |||||||||||| || |||  |||||||||||||||||||  ||||| 
seq2  T-TGGTCACTTACT-ACTCAG--CCCATCTGTCCCAGAAGAAACGAAAAA  1140

seq1  AATTTGTTGAGAAAATGAGAAATCTATCTTTTTGTTTGTTTGTTTGTTTC  1200
       ||||| ||| ||||||||||||||| |||| |  |||     ||| | |
seq2  CATTTG-TGA-AAAATGAGAAATCTACCTTTGTTGTTG-----TTGCTCC  1183

seq1  ATTTTTCGAGACAGGGTTTCTCTGTGCAG-CCCTG  1234
      |  || ||| ||||   |||||||||||| |||||
seq2  A--TTCCGAAACAG---TTCTCTGTGCAGACCCTG  1213

seq1: chr16_18382231_18382630
seq2: B6Ng01-126I17.g_66_465 (reverse)

seq1  CCTCCCCCTCCCCCTTCCTAAGCAGGCTTGGAGTCTTCAGTGCCTGGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCTCCCCCTTCCTAAGCAGGCTTGGAGTCTTCAGTGCCTGGTTG  50

seq1  GAAAGATGACTGCCTCTCCCTTTCTCAGAGTTGTTTATATCCATAATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATGACTGCCTCTCCCTTTCTCAGAGTTGTTTATATCCATAATAAC  100

seq1  TCTGCTTCTCATATGTGCAAAACTGGAGCTGAGGAGCTCCAGCAGCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCTCATATGTGCAAAACTGGAGCTGAGGAGCTCCAGCAGCAGCT  150

seq1  GTGACCCCCACCCCCACCCCCGGCTACGGCTGTGACCCCCCAGGATGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCCCACCCCCACCCCCGGCTACGGCTGTGACCCCCCAGGATGTGG  200

seq1  GTCCTTATAGTTTTCCTGTGCCTACGTGTATACAAAGTCATTCCTATGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTATAGTTTTCCTGTGCCTACGTGTATACAAAGTCATTCCTATGCC  250

seq1  TCTTTAGACATGTCATCTGTGTACATCATTTTATCCACTTTCAGCTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGACATGTCATCTGTGTACATCATTTTATCCACTTTCAGCTGGTT  300

seq1  AGTTTTTGTTTTTTTTATGTAAGAGCACCTTAAGGCATGGTGGCACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTGTTTTTTTTATGTAAGAGCACCTTAAGGCATGGTGGCACACAT  350

seq1  CTTTAATGCCAGCACTCAGGAGGCAAAGGCAGGTGGATGTCTGTGAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATGCCAGCACTCAGGAGGCAAAGGCAGGTGGATGTCTGTGAATTC  400