BAC Information

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BAC

Clone NameB6Ng01-127C08
Chromosome16 (Build37)
Map Location 67,503,902 - 67,658,596
singlet/doubletdoublet
Overlap geneCadm2
Upstream gene9330155M09Rik
Downstream geneEG626609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127C08.bB6Ng01-127C08.g
ACCDH929339DH929340
length1,116607
definitionDH929339|Mus musculus domesticus DNA, BAC clone: B6Ng01-127C08, 5' end.DH929340|Mus musculus domesticus DNA, BAC clone: B6Ng01-127C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,657,556 - 67,658,596)(67,503,902 - 67,504,507)
sequence
gaattccaggcccagactggaactgttgacaccttcaggcacacgaggtg
gacaactatcagattctcgacctttcctccaggagacatctatttgtggg
actcctggaactacaacctctaagtcactcgaataaatcaaacacacttg
tattcatcctatcagttgcattcctctagagagccctgattcataaacac
tggattattatgacaccatgatacaactttaatgataaagacatttatcc
catgagtaatgaaagaaaatagtttcttgatatataatctactaatgata
agcagtggtaaaataacagtttatactattacataaaataacagcattct
caatttgaaatgattcactcctctgttaacaaaagttttacagtagataa
ataaaatgttcccaagaacacgacacatgctacagagaaattttttcaat
aaaactgacttgattgttgcaatctcttggcagatttgtttgtgaatttt
taaagtaggatataattgtttaaacagaaggctggtgagtttaaagccag
catgagctataaagtaaaagttgatcaaaaatattacaaaggtatgaaaa
aataaatataaaaagtaatagaaatgtgaaatcattatatttactgcaca
gctgtccagctaccaccaaccctgtttgaccaatactgatgaatgatcct
cacaaaccaaaaagttacatactttggcttagagaattattactattttt
aagaatgaaaataattataattaaggaatataaatattttagatataata
ttaataaatatttaataaaatatgatagagataacgcatgtattaccaca
aactgtatatgcattgtaaaagcaaaaagaattatttgtttttatgttac
tgtaatatctactttattgctatggtctagaatcaaacctatactatctc
tgaggtataccactctatatactattgagtacatttagatttatagagta
acataggtaatgataacatcataaacttagataaaggtataagtagcaaa
tttgttatgtctctaggatatcattagataaattggatccaattctaata
ataaaaatgttcatat
gaattcatttcatacataggctatgaattaattattgttttgcatttaaa
ttatgtgtatttgtgttggagtggcagtgggaattgtacataagtgcagt
ggccaggaggccaggggaaaaaaaaaggtgcaggatatttggagcttaaa
ttatagtggttgtagtctccagactttgctgtttggaacagaactctgat
ccttggagaaagaaatctgaggagaatcaaggattgacagagccagaggg
gtcaaggccaccaatggaaaacctacagaatcaactactctggctctata
tggactcatagaatctgaactgccaaccagagagcatgcatgggacagac
ataggtcttctgcacatgtgtaaccactaggcagctgggtctacatatgg
aactcctaaagtgggatcagggactatctctgaccgcatcgcttgccttt
agataacattatcctaactgggatgctttgcctagccacaataggagaat
aaggacgtagtcttactgtaacttgatttgccaactcaaaatgatatgca
tggggaggcctccatttctctgagaaggtgagataggtggattgggagga
gagggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_67657556_67658596
seq2: B6Ng01-127C08.b_131_1162 (reverse)

seq1  ATATGAACATTTTTATTTATTAGAATTGGATCCAAATTTATTCTAATGAT  50
      ||||||||||||||| ||||||||||||||||| |||||| |||||||||
seq2  ATATGAACATTTTTA-TTATTAGAATTGGATCC-AATTTA-TCTAATGAT  47

seq1  ATTCCTAGGAGACATAACAAATATGCTACTTTATACCTTTTATCTAAGTT  100
      | ||||| |||||||||||||| |||||| ||||||| |||||||||| |
seq2  A-TCCTA-GAGACATAACAAATTTGCTAC-TTATACC-TTTATCTAAG-T  92

seq1  TTATGATGTTATCATTACCTATGTTACTTCTATAAATCTTAATGTACTCA  150
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  TTATGATGTTATCATTACCTATGTTAC-TCTATAAATCTAAATGTACTCA  141

seq1  ATAGTATATTAGAGTGGTATACCTCAGAGATAGTATAGGTTTGATTCTAG  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATA-TAGAGTGGTATACCTCAGAGATAGTATAGGTTTGATTCTAG  190

seq1  ACCATAGCAATAAAGTAGATATTACAGTAACATAAAAACAAATAATTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGCAATAAAGTAGATATTACAGTAACATAAAAACAAATAATTCTT  240

seq1  TTTGCTTTTACAATGCATATACAGTTTGTGGTAATACATGCGTTATCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTTACAATGCATATACAGTTTGTGGTAATACATGCGTTATCTCT  290

seq1  ATCATATTTTATTAAATATTTATTAATATTATATCT-AAATATTTATATT  349
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCATATTTTATTAAATATTTATTAATATTATATCTAAAATATTTATATT  340

seq1  CCTTAATTATAATTATTTTCATTCTTAAAAATAGTAATAATTCTCTAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATTATAATTATTTTCATTCTTAAAAATAGTAATAATTCTCTAAGC  390

seq1  CAAAGTATGTAACTTTTTGGTTTGTGAGGATCATTCATCAGTATTGGTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTATGTAACTTTTTGGTTTGTGAGGATCATTCATCAGTATTGGTCA  440

seq1  AACAGGGTTGGTGGTAGCTGGACAGCTGTGCAGTAAATATAATGATTTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGTTGGTGGTAGCTGGACAGCTGTGCAGTAAATATAATGATTTCA  490

seq1  CATTTCTATTACTTTTTATATTTATTTTTTCATACCTTTGTAATATTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTATTACTTTTTATATTTATTTTTTCATACCTTTGTAATATTTTT  540

seq1  GATCAACTTTTACTTTATAGCTCATGCTGGCTTTAAACTCACCAGCCTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAACTTTTACTTTATAGCTCATGCTGGCTTTAAACTCACCAGCCTTC  590

seq1  TGTTTAAACAATTATATCCTACTTTAAAAATTCACAAACAAATCTGCCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAACAATTATATCCTACTTTAAAAATTCACAAACAAATCTGCCAA  640

seq1  GAGATTGCAACAATCAAGTCAGTTTTATTGAAAAAATTTCTCTGTAGCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGCAACAATCAAGTCAGTTTTATTGAAAAAATTTCTCTGTAGCAT  690

seq1  GTGTCGTGTTCTTGGGAACATTTTATTTATCTACTGTAAAACTTTTGTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCGTGTTCTTGGGAACATTTTATTTATCTACTGTAAAACTTTTGTTA  740

seq1  ACAGAGGAGTGAATCATTTCAAATTGAGAATGCTGTTATTTTATGTAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGAGTGAATCATTTCAAATTGAGAATGCTGTTATTTTATGTAATA  790

seq1  GTATAAACTGTTATTTTACCACTGCTTATCATTAGTAGATTATATATCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAACTGTTATTTTACCACTGCTTATCATTAGTAGATTATATATCAA  840

seq1  GAAACTATTTTCTTTCATTACTCATGGGATAAATGTCTTTATCATTAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTATTTTCTTTCATTACTCATGGGATAAATGTCTTTATCATTAAAG  890

seq1  TTGTATCATGGTGTCATAATAATCCAGTGTTTATGAATCAGGGCTCTCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCATGGTGTCATAATAATCCAGTGTTTATGAATCAGGGCTCTCTA  940

seq1  GAGGAATGCAACTGATAGGATGAATACAAGTGTGTTTGATTTATTCGAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATGCAACTGATAGGATGAATACAAGTGTGTTTGATTTATTCGAGT  990

seq1  GACTTAGAGGTTGTAGTTCCAGGAGTCCCACAAATAGATGTC  1041
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGAGGTTGTAGTTCCAGGAGTCCCACAAATAGATGTC  1032

seq1: chr16_67503902_67504507
seq2: B6Ng01-127C08.g_68_674

seq1  GAATTCATTTCATACATAGGCTATGAATTAATTATTGTTTTGCATTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCATACATAGGCTATGAATTAATTATTGTTTTGCATTTAAA  50

seq1  TTATGTGTATTTGTGTTGGAGTGGCAGTGGGAATTGTACATAAGTGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTATTTGTGTTGGAGTGGCAGTGGGAATTGTACATAAGTGCAGT  100

seq1  GGCCAGGAGGCCAGGGGAAAAAAAAAGGTGCAGGATATTTGGAGCTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGAGGCCAGGGGAAAAAAAAAGGTGCAGGATATTTGGAGCTTAAA  150

seq1  TTATAGTGGTTGTAGTCTCCAGACTTTGCTGTTTGGAACAGAACTCTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTGGTTGTAGTCTCCAGACTTTGCTGTTTGGAACAGAACTCTGAT  200

seq1  CCTTGGAGAAAGAAATCTGAGGAGAATCAAGGATTGACAGAGCCAGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAGAAAGAAATCTGAGGAGAATCAAGGATTGACAGAGCCAGAGGG  250

seq1  GTCAAGGCCACCAATGGAAAACCTACAGAATCAACTACTCTGGCTCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGCCACCAATGGAAAACCTACAGAATCAACTACTCTGGCTCTATA  300

seq1  TGGACTCATAGAATCTGAACTGCCAACCAGAGAGCATGCATGGGACAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCATAGAATCTGAACTGCCAACCAGAGAGCATGCATGGGACAGAC  350

seq1  ATAGGTCTTCTGCACATGTGTAACCACTAGGCAGCTGGGTCTACATATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCTTCTGCACATGTGTAACCACTAGGCAGCTGGGTCTACATATGG  400

seq1  AACTCCTAAAGTGGGATCAGGGACTATCTCTGACCGCATCGCTTGCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTAAAGTGGGATCAGGGACTATCTCTGACCGCATCGCTTGCCTTT  450

seq1  AGATAACATTATCCTAACTGGGATGCTTTGCCTAGCCACAATAGGAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACATTATCCTAACTGGGATGCTTTGCCTAGCCACAATAGGAGAAT  500

seq1  AAGGACGTAGTCTTACTGTAACTTGATTTGCCAACTCAAAATGATATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACGTAGTCTTACTGTAACTTGATTTGCCAACTCAAAATGATATGCA  550

seq1  T-GGGAGGCCTCCATTTCTCTGAGAAGGTGAGATAGGTGGATTGGGAGGA  599
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGCCTCCATTTCTCTGAGAAGGTGAGATAGGTGGATTGGGAGGA  600

seq1  GAGGGAA  606
      |||||||
seq2  GAGGGAA  607