BAC Information

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BAC

Clone NameB6Ng01-127C14
Chromosome16 (Build37)3 (Build37)
Map Location 86,993,067 - 86,994,19545,385,902 - 45,386,475
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040025, LOC100039780
Downstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127C14.bB6Ng01-127C14.g
ACCDH929351DH929352
length1,116899
definitionDH929351|Mus musculus domesticus DNA, BAC clone: B6Ng01-127C14, 5' end.DH929352|Mus musculus domesticus DNA, BAC clone: B6Ng01-127C14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,993,067 - 86,994,195)(45,385,902 - 45,386,475)
sequence
gaattctttttaatgcttgcttaattgctagagagatagcttagtggtag
acgatgtgcttaacatacacaacgtttgggttcagtctccaacagcacac
atggaaacacatgaatacattcatatgcacattaacacatcatcggtgct
agcattagcttaacaatttttcataattcagagctacccaaggaaacaaa
tcatttaaaagtatctgtatttgtagaatttttccctttagcatatttac
aaccaatacccattcctttggacacaatgagaataaataaagtcatgtgc
tcacatatttcctgcaccaattacacagttaagaaaaatatgaacttatc
tcagacttgttcttagagttttactcatctacttagcatcaattgtttgg
gtcacctaatttatggaagaaaaaaatttcatgtaatgttcaaaaagact
taaatcagtaaatagaagaaaaactgagagaaaactttctttacagattg
ctagctgagtccacatcattactctcttccttctccatgtctcttctgaa
gctcttctacacagatactgaaagcaatggtgcactggaagctatggctg
tatgagaccagaaaatgtctagtaagacataggtttttaaaacagtgttt
cctcctctacttgaaatctgtgcaaaatcagtagaagatgaacataatat
ggttctgtcctgctgaagccaagttgttcccctcccctgtagtttctgtc
atagctattctagaaattctgcgacttctgtccagagagctgtcctcaga
atggcccttcccacattagaagtctaagaacatcgccacagacagatgat
agaacctaaagcacaaaggccatccactgcagatacacatccctttctct
tgagtgtgtcttctcagttttcactcattttgggtcttcagactcatttc
ccagagacatagatggcacttgagtcactggggactgatttacattgctt
taagactcaaacacctggctgtgagtgcagccctttcaaactgccctgca
ctcacagaatattacagatccgtgactgataggagtagtttatgtgactg
tttgatgcatgacgtt
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattggt
ttaatgtgttcttggattcggttagcgagaattttattaagaatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gtttttgttgagtatagccttttgtagaaggatctgatagtgttttggat
ttcttcaggatctgttgttatgtctcccttttcatttctgattttgttaa
ttaggatttgtccctgtgcccttttagtgagtctagctaagggtttatct
atcttgttgattttctcaaagaaccaactcctcgtttggataaatctttg
attagttcttcttgtttccactgggttgatttcacccctgagtttgatta
tttcctgcggctactcctctgggtgaattgcttcatttttctagagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_86993067_86994195
seq2: B6Ng01-127C14.b_49_1164

seq1  GAATTCTTTTTAATGCTTGCTTAATTGCTAGAGAGATAGCTTAGTGGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTAATGCTTGCTTAATTGCTAGAGAGATAGCTTAGTGGTAG  50

seq1  ACGATGTGCTTAACATACACAACGTTTGGGTTCAGTCTCCAACAGCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGTGCTTAACATACACAACGTTTGGGTTCAGTCTCCAACAGCACAC  100

seq1  ATGGAAACACATGAATACATTCATATGCACATTAACACATCATCGGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAACACATGAATACATTCATATGCACATTAACACATCATCGGTGCT  150

seq1  AGCATTAGCTTAACAATTTTTCATAATTCAGAGCTACCCAAGGAAACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAGCTTAACAATTTTTCATAATTCAGAGCTACCCAAGGAAACAAA  200

seq1  TCATTTAAAAGTATCTGTATTTGTAGAATTTTTCCCTTTAGCATATTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAAAGTATCTGTATTTGTAGAATTTTTCCCTTTAGCATATTTAC  250

seq1  AACCAATACCCATTCCTTTGGACACAATGAGAATAAATAAAGTCATGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATACCCATTCCTTTGGACACAATGAGAATAAATAAAGTCATGTGC  300

seq1  TCACATATTTCCTGCACCAATTACACAGTTAAGAAAAATATGAACTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATATTTCCTGCACCAATTACACAGTTAAGAAAAATATGAACTTATC  350

seq1  TCAGACTTGTTCTTAGAGTTTTACTCATCTACTTAGCATCAATTGTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTTGTTCTTAGAGTTTTACTCATCTACTTAGCATCAATTGTTTGG  400

seq1  GTCACCTAATTTATGGAAGAAAAAAATTTCATGTAATGTTCAAAAAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTAATTTATGGAAGAAAAAAATTTCATGTAATGTTCAAAAAGACT  450

seq1  TAAATCAGTAAATAGAAGAAAAACTGAGAGAAAACTTTCTTTACAGATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAGTAAATAGAAGAAAAACTGAGAGAAAACTTTCTTTACAGATTG  500

seq1  CTAGCTGAGTCCACATCATTACTCTCTTCCTTCTCCATGTCTCTTCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGAGTCCACATCATTACTCTCTTCCTTCTCCATGTCTCTTCTGAA  550

seq1  GCTCTTCTACACAGATACTGAAAGCAATGGTGCACTGGAAGCTATGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCTACACAGATACTGAAAGCAATGGTGCACTGGAAGCTATGGCTG  600

seq1  TATGAGACCAGAAAATGTCTAGTAAGACATAGGTTTTTAAAACAGTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGACCAGAAAATGTCTAGTAAGACATAGGTTTTTAAAACAGTGTTT  650

seq1  CCTCCTCTACTTGAAATCTGTGCAAAATCAGTAGAAGATGAACATAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTACTTGAAATCTGTGCAAAATCAGTAGAAGATGAACATAATAT  700

seq1  GGTTCTGTCCTGCTGAAGCCAAGTTGTTCCCCTCCCCTGTAGTTTCTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGTCCTGCTGAAGCCAAGTTGTTCCCCTCCCCTGTAGTTTCTGTC  750

seq1  ATAGCTATTCTAGAAATTCTGCGACTTCTGTCCAGAGAGCTGTCCTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTATTCTAGAAATTCTGCGACTTCTGTCCAGAGAGCTGTCCTCAGA  800

seq1  ATGGCCCTTCCCACATTAGAAGTCTAAGAACATCGCCACAGACAGATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCTTCCCACATTAGAAGTCTAAGAACATCGCCACAGACAGATGAT  850

seq1  AGAACCTAAAGCACAAAGGCCATCCACTGCAGATACACATCCCTTTCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTAAAGCACAAAGGCCATCCACTGCAGATACACATCCCTTTCTCT  900

seq1  TGAGTGTGTCTTCTCAGTTTTCACTCATTTTGGGTCTTCAGACTCATTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGTCTTCTCAGTTTTCACTCATTTTGGGTCTTCAGACTCATTTC  950

seq1  CCAGAAGACATAGATGGCACTTGAGTCACTGGGGACTGATTTACATTGCT  1000
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAG-AGACATAGATGGCACTTGAGTCACTGGGGACTGATTTACATTGCT  999

seq1  TTAAGGACTCCAAACACCTGGCTGTGAAGTGCAGCCCTTTCAAAACTGCC  1050
      |||| |||| |||||||||||||||| |||||||||||||| ||||||||
seq2  TTAA-GACT-CAAACACCTGGCTGTG-AGTGCAGCCCTTTC-AAACTGCC  1045

seq1  CTGCACTCACAGAATATTTAACAGGATCCGTGGACTGATAGGAGTAGTTT  1100
      ||||||||||||||||||  ||| ||||||| ||||||||||||||| ||
seq2  CTGCACTCACAGAATATT--ACA-GATCCGT-GACTGATAGGAGTAG-TT  1090

seq1  TATGTGAACTGTTGGATGGCAATGACGTT  1129
      |||||| |||||| ||||   ||||||||
seq2  TATGTG-ACTGTTTGATG--CATGACGTT  1116

seq1: chr3_45385902_45386475
seq2: B6Ng01-127C14.g_401_970 (reverse)

seq1  AAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAG  50
      |||||||||  ||||| ||||| ||||||||| |||||||||| | ||||
seq2  AAGCTCTAG--AAAAATGAAGC-AATTCACCC-AGAGGAGTAG-CCGCAG  45

seq1  GAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAAC  100
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAAATAATCAAACTCAGGGGTGAAATCAACCCAGTGGAAACAAGAAGAAC  95

seq1  TATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACA  150
      || ||||||| ||| |||||||||||||||||||||||||||||||||||
seq2  TAATCAAAGATTTATCCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACA  145

seq1  AGATAGATAAACCCTTAGCTAGACTCACT-AAAGGGCACAGGGACAAAAT  199
      ||||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  AGATAGATAAACCCTTAGCTAGACTCACTAAAAGGGCACAGGGAC-AAAT  194

seq1  CCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTG  244

seq1  AAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAAC-  298
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  AAGAAATCCAAAACACTATCAGATCCTTCTACAAAAGGCTATACTCAACA  294

seq1  AAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGG  344

seq1  TACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCC  394

seq1  CCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCC  444

seq1  AGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATC  494

seq1  TAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATT  544

seq1  CTACCCAACTCATTTTATGAAGCCAC  574
      ||||||||||||||||||||||||||
seq2  CTACCCAACTCATTTTATGAAGCCAC  570