BAC Information

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BAC

Clone NameB6Ng01-127M16
Chromosome16 (Build37)
Map Location 40,796,641 - 40,976,287
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667400
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127M16.bB6Ng01-127M16.g
ACCDH929815DH929816
length1,048860
definitionDH929815|Mus musculus domesticus DNA, BAC clone: B6Ng01-127M16, 5' end.DH929816|Mus musculus domesticus DNA, BAC clone: B6Ng01-127M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,975,236 - 40,976,287)(40,796,641 - 40,797,493)
sequence
gaattcttgtttcttcttgggaaaccccagtagcatttcttttgatctat
tttatgtaaggcagcctggagttagaagagaaagagggtcctacatataa
aaaatgttttcctttgaacaaggaacctgctgttggatcttctctgtgga
aatagctaaaggaagtcactgaagaaggccattgctcttcaagatgagat
taaaagcgaggcagtacattcatgtattcacagtttaccaagcccttcat
gggcatcagcaaattcttatgatgatcttggaaaggattgcaaaaagaac
attgagagatgcagaaatacacatatattcatgtttgatctctgagctcc
caaggcaagggcagtattctgagtcctaacaccccttaaagaatgagata
gaaacattcaatagttagatctggaaatcaactagaaaagggttgtattt
gtgtgtgtgttttgttttgctttgctttgttttttgcttttagtctgtga
cttacagtgatatggttttagtagtacttcagtctaagttagttccactg
gtaagtacagaaagggttagggaggtagtagatggttcacagaccaaagc
tttattcccaggttctataaaatgctagggaagaaatgagtatggatagc
tgttctctgatctacacacatgtgccatcacatccatattttatacatac
atacatacacagaaataagtaaataactataaaagaaaataaagtattag
gagaaagcatgtcctacctaatacctgaaacagaaactgaaatacagacc
tatatgacacatgtctaagtgtctaaataatatttcagtattgctgtgta
gctttgactggtctggaagtcactgtgtagatcaggatgacttcaaattc
atatagatatccactcctctgcctcctgagtgctggggataagaacatct
actactatggcagctcactagtctaaataattttaacattataaatcaca
ttattttgcaaattgtattacaattcaatattctacattcatacatat
gaattcatgtgtagtagtttccactccttagtttagaaatataaagattg
aagaatgttttatatatttgtataaaaattaacatactaaaatttgaaat
gactgttagctattaactgcctttttaaatatgagtaaaaattagcccta
cactgcataggaagaggaaagtttagagaaaatgctgtcaacaacagaac
tccaaagagcaaggtaggagaagattaaggaaaaaaatccagtggaggag
ctagagaaagtactcaaggagctgaaggggtctgcaaccctatagatgga
acaacaatatgaactaaccagtatccccagaggtcgtgtctctagctgca
tatgtaacagaagatggcctagttggccatcattgggaagagaggccctt
ggtctggcaaagattctatgccccagtacaggggaacaccagggccagga
agcaggagtgggtgggttcgggagcagggcaggggggtgtataggggcct
ttcgggatagcatttgtaatgtaaatgaagaaaatatctaacaagaattg
tttttttttttttttttttttaaagaaatcagtcataaatctagtttcac
tcactacactggcagacttctgctgttctctcattttagttcagcaagaa
aaaaatgggaaaggtaattatcatacattaatttgtataaaataattttg
tttcatcatgacacttaaatatacatacacaataaccttttgaacatttt
tagtcccctatgatccattttatgagggggggaatacatgatctatcctg
aagtcatttagttcctggctggtgggggagcagagagaattgcattcaag
ttatgcctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_40975236_40976287
seq2: B6Ng01-127M16.b_50_1097 (reverse)

seq1  ATATGTATGAATGTAGAATAATTGAATTGTTAATACCATTTTGCCATAAT  50
      ||||||||||||||||||| ||||||||| |||||| ||||   || |||
seq2  ATATGTATGAATGTAGAAT-ATTGAATTG-TAATACAATTT--GCAAAAT  46

seq1  AATGTGATTTATAATGTTAGAA-TATTTAGACTAGTGAGCCTGCCATAGT  99
      ||||||||||||||||||| || |||||||||||||||| ||||||||||
seq2  AATGTGATTTATAATGTTAAAATTATTTAGACTAGTGAG-CTGCCATAGT  95

seq1  AGTAGATGTTCTTAATCCCAGCACTCAGGAGGCAGAGGAGTGGATATCTA  149
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  AGTAGATGTTCTTATCCCCAGCACTCAGGAGGCAGAGGAGTGGATATCTA  145

seq1  TATGAATTTGAAGTCATCCTGATCTACACAGTGACTTCCAGACCAGTCAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTTGAAGTCATCCTGATCTACACAGTGACTTCCAGACCAGTCAA  195

seq1  AGCTACACAGCAATACTGAAATATTATTTAGACACTTAGACATGTGTCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACACAGCAATACTGAAATATTATTTAGACACTTAGACATGTGTCAT  245

seq1  ATAGGTCTGTATTTCAGTTTCTGTTTCAGGTATTAGGTAGGACATGCTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCTGTATTTCAGTTTCTGTTTCAGGTATTAGGTAGGACATGCTTT  295

seq1  CTCCTAATACTTTATTTTCTTTTATAGTTATTTACTTATTTCTGTGTATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAATACTTTATTTTCTTTTATAGTTATTTACTTATTTCTGTGTATG  345

seq1  TATGTATGTATAAAATATGGATGTGATGGCACATGTGTGTAGATCAGAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTATAAAATATGGATGTGATGGCACATGTGTGTAGATCAGAGA  395

seq1  ACAGCTATCCATACTCATTTCTTCCCTAGCATTTTATAGAACCTGGGAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATCCATACTCATTTCTTCCCTAGCATTTTATAGAACCTGGGAAT  445

seq1  AAAGCTTTGGTCTGTGAACCATCTACTACCTCCCTAACCCTTTCTGTACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTGGTCTGTGAACCATCTACTACCTCCCTAACCCTTTCTGTACT  495

seq1  TACCAGTGGAACTAACTTAGACTGAAGTACTACTAAAACCATATCACTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTGGAACTAACTTAGACTGAAGTACTACTAAAACCATATCACTGT  545

seq1  AAGTCACAGACTAAAAGCAAAAAACAAAGCAAAGCAAAACAAAACACACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACAGACTAAAAGCAAAAAACAAAGCAAAGCAAAACAAAACACACA  595

seq1  CACAAATACAACCCTTTTCTAGTTGATTTCCAGATCTAACTATTGAATGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATACAACCCTTTTCTAGTTGATTTCCAGATCTAACTATTGAATGT  645

seq1  TTCTATCTCATTCTTTAAGGGGTGTTAGGACTCAGAATACTGCCCTTGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTCATTCTTTAAGGGGTGTTAGGACTCAGAATACTGCCCTTGCC  695

seq1  TTGGGAGCTCAGAGATCAAACATGAATATATGTGTATTTCTGCATCTCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGCTCAGAGATCAAACATGAATATATGTGTATTTCTGCATCTCTC  745

seq1  AATGTTCTTTTTGCAATCCTTTCCAAGATCATCATAAGAATTTGCTGATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTTTTTGCAATCCTTTCCAAGATCATCATAAGAATTTGCTGATG  795

seq1  CCCATGAAGGGCTTGGTAAACTGTGAATACATGAATGTACTGCCTCGCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAAGGGCTTGGTAAACTGTGAATACATGAATGTACTGCCTCGCTT  845

seq1  TTAATCTCATCTTGAAGAGCAATGGCCTTCTTCAGTGACTTCCTTTAGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTCATCTTGAAGAGCAATGGCCTTCTTCAGTGACTTCCTTTAGCT  895

seq1  ATTTCCACAGAGAAGATCCAACAGCAGGTTCCTTGTTCAAAGGAAAACAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCACAGAGAAGATCCAACAGCAGGTTCCTTGTTCAAAGGAAAACAT  945

seq1  TTTTTATATGTAGGACCCTCTTTCTCTTCTAACTCCAGGCTGCCTTACAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATGTAGGACCCTCTTTCTCTTCTAACTCCAGGCTGCCTTACAT  995

seq1  AAAATAGATCAAAAGAAATGCTACTGGGGTTTCCCAAGAAGAAACAAGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGATCAAAAGAAATGCTACTGGGGTTTCCCAAGAAGAAACAAGAA  1045

seq1  TTC  1052
      |||
seq2  TTC  1048

seq1: chr16_40796641_40797493
seq2: B6Ng01-127M16.g_70_929

seq1  GAATTCATGTGTAGTAGTTTCCACTCCTTAGTTTAGAAATATAAAGATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGTAGTAGTTTCCACTCCTTAGTTTAGAAATATAAAGATTG  50

seq1  AAGAATGTTTTATATATTTGTATAAAAATTAACATACTAAAATTTGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGTTTTATATATTTGTATAAAAATTAACATACTAAAATTTGAAAT  100

seq1  GACTGTTAGCTATTAACTGCCTTTTTAAATATGAGTAAAAATTAGCCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTAGCTATTAACTGCCTTTTTAAATATGAGTAAAAATTAGCCCTA  150

seq1  CACTGCATAGGAAGAGGAAAGTTTAGAGAAAATGCTGTCAACAACAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCATAGGAAGAGGAAAGTTTAGAGAAAATGCTGTCAACAACAGAAC  200

seq1  TCCAAAGAGCAAGGTAGGAGAAGATTAAGGAAAAAAATCCAGTGGAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGAGCAAGGTAGGAGAAGATTAAGGAAAAAAATCCAGTGGAGGAG  250

seq1  CTAGAGAAAGTACTCAAGGAGCTGAAGGGGTCTGCAACCCTATAGATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTACTCAAGGAGCTGAAGGGGTCTGCAACCCTATAGATGGA  300

seq1  ACAACAATATGAACTAACCAGTATCCCCAGAGGTCGTGTCTCTAGCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAATATGAACTAACCAGTATCCCCAGAGGTCGTGTCTCTAGCTGCA  350

seq1  TATGTAACAGAAGATGGCCTAGTTGGCCATCATTGGGAAGAGAGGCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAACAGAAGATGGCCTAGTTGGCCATCATTGGGAAGAGAGGCCCTT  400

seq1  GGTCTGGCAAAGATTCTATGCCCCAGTACAGGGGAACACCAGGGCCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGCAAAGATTCTATGCCCCAGTACAGGGGAACACCAGGGCCAGGA  450

seq1  AGCAGGAGTGGGTGGGTTCGGGAGCAGGGCAGGGGGGTGTATAGGGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGTGGGTGGGTTCGGGAGCAGGGCAGGGGGGTGTATAGGGGCCT  500

seq1  TTCGGGATAGCATTTGTAATGTAAATGAAGAAAATATCTAACAAGAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGATAGCATTTGTAATGTAAATGAAGAAAATATCTAACAAGAATTG  550

seq1  TTTTTTTTTTTTTTTTTTTTTAAAGAAATCAGTCATAAATCTAGTTTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTAAAGAAATCAGTCATAAATCTAGTTTCAC  600

seq1  TCACTACACTGGCAGACTTCTGCTGTTCTCTCATTTAAGTTCAGCAAGAA  650
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCACTACACTGGCAGACTTCTGCTGTTCTCTCATTTTAGTTCAGCAAGAA  650

seq1  AAAAATGGGAAAGGTAATTATCATACATTAA-TTGTATAAAATAA-TTTG  698
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  AAAAATGGGAAAGGTAATTATCATACATTAATTTGTATAAAATAATTTTG  700

seq1  TTTCATCATGACACTTAAATATACATACACAATAACC-TTTGAACATTTT  747
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTCATCATGACACTTAAATATACATACACAATAACCTTTTGAACATTTT  750

seq1  TAGTCCCCTATGATCCATTTTATGA-GGAGGGAATACATGATCTATCCTG  796
      ||||||||||||||||||||||||| || |||||||||||||||||||||
seq2  TAGTCCCCTATGATCCATTTTATGAGGGGGGGAATACATGATCTATCCTG  800

seq1  AAGTCATTTAG-TCCTGGCTG--TGGGGAGCAGAGAGAATTGCATTCAAG  843
      ||||||||||| |||||||||   ||||||||||||||||||||||||||
seq2  AAGTCATTTAGTTCCTGGCTGGTGGGGGAGCAGAGAGAATTGCATTCAAG  850

seq1  TTATGCCTAC  853
      ||||||||||
seq2  TTATGCCTAC  860