BAC Information

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BAC

Clone NameB6Ng01-128D05
Chromosome16 (Build37)
Map Location 5,174,036 - 5,310,377
singlet/doubletdoublet
Overlap geneSec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
Upstream geneCrebbp, EG436332, Adcy9, EG620313, Srl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl
Downstream geneLOC100042436, A2bp1, LOC100042445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128D05.bB6Ng01-128D05.g
ACCDH930117DH930118
length1,097496
definitionDH930117|Mus musculus domesticus DNA, BAC clone: B6Ng01-128D05, 5' end.DH930118|Mus musculus domesticus DNA, BAC clone: B6Ng01-128D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,174,036 - 5,175,143)(5,309,877 - 5,310,377)
sequence
gaattcaaagccagcctgggctagagattctaccatccataaaacaaaca
aacaaacaaacaaatgaacaaacaaatggagttgggaagctacagactct
ctttaggagagtgctacacctcttccagcttttgatggcccctgagtttg
tggctgtatcattctcaatttttacacctacttggaatgcatggcctccc
ctgtgggtatctctgtgccctttaccacctctcaggagctccggatcctt
tagaacccaccccacctccatcctgatgtcactgggagatccttaattga
caactgcagctccagtagcaaggctctggggcttaaccagttgagctgac
tctctagctccaaaattttcaatttttgttggttattttggtgtctaaaa
aatggcttttttttttttttttggtttttcaagacagggtttctctgtat
agccctggctgtcctggaactcactttgtagaccaggctggccttgagct
cagaaatcctcctgcctctgcctcccaagtgctgggattaaaggcatgca
ccaccatgctactcagtgtggtgcctagtagctcaggcctgacatcccaa
ctccttgagaggttggggcaggaggatgcaagtttaatgcctatgctggc
cagggagtgagttcaggtatggcctgggaacttttgagacacagactgaa
aagaaagttggagaatggctctgtggtaggtcacctgccctgtgaagccc
tggattctaagccttagtgccttgagaggggcacaaacagaagagaatag
ctggatctgcagggctgaagtactggtctctgtgtgcaggaccttccata
gaggacatgtgtgcccagtaagtttcatccactgaattacagtcctctgg
ctttgagatcaagattggtgagtccacagtctctattatatactgtcctt
agtagaatgcatgcaagcaagccaatctgctgataagacacaaaatgtac
tggacatgaaacagaccaacttcttgtccacagaagccgtgctgagtatc
cctagctcaggttcagtttcgagcacgctctcaggaagaaagagaac
agttccaccaagcaacaagcagggactctcagcctggctgcctggtgttg
aagaaggggaagcaggtaagcgattccctagtgaggctttccttcccctc
caggaagagccacaggctgcaaatcacactgggatctctccctggggttg
gagaatgcagaagaaactataagactcctgaccccaagaggcaggcagca
gtatacgtctttctgaggctgggttgtgtggattgtagattttaattgtt
atttatgtatataagtgggggcaggtgtgggaatacgtcataaaattaga
gaatgaccgtggtgggggaggcaaagaggaagtggggagggcaatagaac
acaagtaacaagaaagcagaaaggaggtactgaggggacagattagaatg
agggggtggagaagaagagcaaaaatgggtgggtgtgcatgtgtgtttgt
gtgcatgcacactttgtgtgtgtacttgtgtgtgtgcacaagtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_5174036_5175143
seq2: B6Ng01-128D05.b_47_1143

seq1  GAATTCAAAGCCAGCCTGGGCTAGAGATTCTACCATCCATAAAACAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCCAGCCTGGGCTAGAGATTCTACCATCCATAAAACAAACA  50

seq1  AACAAACAAACAAATGAACAAACAAATGGAGTTGGGAAGCTACAGACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAATGAACAAACAAATGGAGTTGGGAAGCTACAGACTCT  100

seq1  CTTTAGGAGAGTGCTACACCTCTTCCAGCTTTTGATGGCCCCTGAGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGAGAGTGCTACACCTCTTCCAGCTTTTGATGGCCCCTGAGTTTG  150

seq1  TGGCTGTATCATTCTCAATTTTTACACCTACTTGGAATGCATGGCCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTATCATTCTCAATTTTTACACCTACTTGGAATGCATGGCCTCCC  200

seq1  CTGTGGGTATCTCTGTGCCCTTTACCACCTCTCAGGAGCTCCGGATCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTATCTCTGTGCCCTTTACCACCTCTCAGGAGCTCCGGATCCTT  250

seq1  TAGAACCCACCCCACCTCCATCCTGATGTCACTGGGAGATCCTTAATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCCACCCCACCTCCATCCTGATGTCACTGGGAGATCCTTAATTGA  300

seq1  CAACTGCAGCTCCAGTAGCAAGGCTCTGGGGCTTAACCAGTTGAGCTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCAGCTCCAGTAGCAAGGCTCTGGGGCTTAACCAGTTGAGCTGAC  350

seq1  TCTCTAGCTCCAAAATTTTCAATTTTTGTTGGTTATTTTGGTGTCTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGCTCCAAAATTTTCAATTTTTGTTGGTTATTTTGGTGTCTAAAA  400

seq1  AATGGCTTTTTTTTTTTTTTTTGGTTTTTCAAGACAGGGTTTCTCTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTTTTTTTTTTTTTTTTGGTTTTTCAAGACAGGGTTTCTCTGTAT  450

seq1  AGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAGCT  500

seq1  CAGAAATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCA  550

seq1  CCACCATGCTACTCAGTGTGGTGCCTAGTAGCTCAGGCCTGACATCCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGCTACTCAGTGTGGTGCCTAGTAGCTCAGGCCTGACATCCCAA  600

seq1  CTCCTTGAGAGGTTGGGGCAGGAGGATGCAAGTTTAATGCCTATGCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGAGAGGTTGGGGCAGGAGGATGCAAGTTTAATGCCTATGCTGGC  650

seq1  CAGGGAGTGAGTTCAGGTATGGCCTGGGAACTTTTGAGACACAGACTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGTGAGTTCAGGTATGGCCTGGGAACTTTTGAGACACAGACTGAA  700

seq1  AAGAAAGTTGGAGAATGGCTCTGTGGTAGGTCACCTGCCCTGTGAAGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTTGGAGAATGGCTCTGTGGTAGGTCACCTGCCCTGTGAAGCCC  750

seq1  TGGATTCTAAGCCTTAGTGCCTTGAGAGGGGCACAAACAGAAGAGAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCTAAGCCTTAGTGCCTTGAGAGGGGCACAAACAGAAGAGAATAG  800

seq1  CTGGATCTGCAGGGCTGAAGTACTGGTCCCTGTGTGCAGGACCTTCCATA  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGGATCTGCAGGGCTGAAGTACTGGTCTCTGTGTGCAGGACCTTCCATA  850

seq1  GAGGACATGTGTGCCCAGTAAGTTTCATCCACTGATTTACAGTCCTCTGG  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAGGACATGTGTGCCCAGTAAGTTTCATCCACTGAATTACAGTCCTCTGG  900

seq1  CTTTGAGATCAAGATTGGTGAGTCCACAGTCTCTATTATATACTGTCCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGATCAAGATTGGTGAGTCCACAGTCTCTATTATATACTGTCCTT  950

seq1  AGGTAGGAATGCA-GCAAGCAAGGCCATCTGCTGATAAGGACACAAAAAT  999
      | ||| ||||||| ||||||||| | |||||||||||| ||||| |||||
seq2  A-GTA-GAATGCATGCAAGCAAGCCAATCTGCTGATAA-GACAC-AAAAT  996

seq1  GTGACTGGACATGAAACAGGACCAACTTC-TGTCCACAGAAGCCGTGGCT  1048
      || ||||||||||||||| |||||||||| |||||||||||||||| |||
seq2  GT-ACTGGACATGAAACA-GACCAACTTCTTGTCCACAGAAGCCGT-GCT  1043

seq1  GAGTATCCACTAGCTCAGGGTTCCAGTTTACAGAGCACAGCTCTCAAGAA  1098
      |||||||| ||||||||||  | ||||||   |||||| ||||||| |||
seq2  GAGTATCC-CTAGCTCAGG--TTCAGTTT--CGAGCAC-GCTCTCAGGAA  1087

seq1  GAAAGAGAAC  1108
      ||||||||||
seq2  GAAAGAGAAC  1097

seq1: chr16_5309877_5310377
seq2: B6Ng01-128D05.g_67_568 (reverse)

seq1  CACACTTGTGCACACACACATGTACACACAC-AAGTGTGCATGCACACAA  49
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  CACACTTGTGCACACACACAAGTACACACACAAAGTGTGCATGCACACAA  50

seq1  ACACACATGCACACCCACCCATTTTTGCTCTTCTTCTCCACCCCCTCATT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATGCACACCCACCCATTTTTGCTCTTCTTCTCCACCCCCTCATT  100

seq1  CTAATCTGTCCCCTCAGTACCTCCTTTCTGCTTTCTTGTTACTTGTGTTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTGTCCCCTCAGTACCTCCTTTCTGCTTTCTTGTTACTTGTGTTC  150

seq1  TATTGCCCTCCCCACTTCCTCTTTGCCTCCCCCACCACGGTCATTCTCTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCCTCCCCACTTCCTCTTTGCCTCCCCCACCACGGTCATTCTCTA  200

seq1  ATTTTATGACGTATTCCCACACCTGCCCCCACTTATATACATAAATAACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGACGTATTCCCACACCTGCCCCCACTTATATACATAAATAACA  250

seq1  ATTAAAATCTACAATCCACACAACCCAGCCTCAGAAAGACGTATACTGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATCTACAATCCACACAACCCAGCCTCAGAAAGACGTATACTGCT  300

seq1  GCCTGCCTCTTGGGGTCAGGAGTCTTATAGTTTCTTCTGCATTCTCCAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTCTTGGGGTCAGGAGTCTTATAGTTTCTTCTGCATTCTCCAAC  350

seq1  CCCAGGGAGAGATCCCAGTGTGATTTGCAGCCTGTGGCTCTTCCTGGAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGAGAGATCCCAGTGTGATTTGCAGCCTGTGGCTCTTCCTGGAGG  400

seq1  GGAAGGAAAGCCTCACTAGGGAATCGCTTACCTGCTTCCCCTTCTTCAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAAGCCTCACTAGGGAATCGCTTACCTGCTTCCCCTTCTTCAAC  450

seq1  ACCAGGCAGCCAGGCTGAGAGTCCCTGCTTGTTGCTTGGTGGAACTGAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCAGCCAGGCTGAGAGTCCCTGCTTGTTGCTTGGTGGAACTGAAT  500

seq1  TC  501
      ||
seq2  TC  502