BAC Information

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BAC

Clone NameB6Ng01-129D07
Chromosome16 (Build37)
Map Location 74,612,571 - 74,613,787
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo2
Downstream geneLOC665042, D930038D03Rik, Rbm11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129D07.bB6Ng01-129D07.g
ACCDH930853DH930854
length1,2431,190
definitionDH930853|Mus musculus domesticus DNA, BAC clone: B6Ng01-129D07, 5' end.DH930854|Mus musculus domesticus DNA, BAC clone: B6Ng01-129D07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagaacttttcagctggggaacgagagtaccagtgagtatgtttg
gccttgaattttttctggtgttaggagcccttttgttctttttcacatgt
tatcaagtgattaagatagggctgaaaattctagaggaaattcaggacaa
gctatcagaagtaaagcgggaagaaagagtaggaacaaagaggaagtatg
gtacacaaaataagtatacaggcctttccaagggtcttgaacccgaggaa
aagttaaggttaggtaggaatacctggagagagattagaagaaaaagagg
aaaaagggagaagaaaaaagatcgattagcggaggtctctaggagatact
cgtcactagatgagctcggggagccagctcttagtaactctgaagcaggt
gaagaatcctcctctgaggaaacagactgggaggaagaagcagcccatta
ccagccagctaattggtcaagaaaaaagccaaaagcggctggcgaaagtc
agcgtactgttcaacctcccggcagtcggtttcaaggtccgccctatgcg
gagcccccgccctgcgtagtgcgtcagcaatgcgcagagaggcaatgcgc
agagagatgcgcagagaggcagtgcgcagagagatgcgcagagaggcagt
gcgcagagaggcagtgcgcagagaggcagtgcgcagactcattcattccc
cgagaggaacaaaagaaaatacaacaggcatttccagtctttgaaggagc
cgagggtgggcgtgtccacgctccggtagaatacgtacagattaaggaaa
ttgcagagtcggttcgtaaatacggaaccaatgctaattttaccttggtg
cagttagacaggctcgctggcatggcactaactcctgccgactggcaaac
ggttgtaaaagccgctctccctagttatgggcaaatatatggaatggaaa
gctgctttggcacgaagctgcacaggcgcagctcgagcaacgcagctgct
ttgactcagagcagagagatgactttgactgttaacggtcaggagcttat
ctgctgatcaaacactacattggggagcttatgccagattcttccacggc
tataggcctggaaggccctctcagcagtgaaccctggtcagttaactaag
aaatcagaactcaggatcttccaatttgctatgactgaggccgagcgtat
ttggaagtcagacacgtgctgccttcattaataacgcctacac
gaattcattccagactttccatttacagccatttaagactatttgtattc
aggaaacaaaataacaagggacagctgtttccctgttttgctcttatttc
taagctatttgaaaacatttagagaggctaaaaatataaaggagcatctt
ctttgtaacttaggatataagtgagtcaggtaaattagagtcaccaacag
aaaagtcaatattttctttctaacctaaatttcaatcatcaatttcattc
tattttagcacacagtcttgttctacgtttttaacaagtgatatatattt
gatcttaacagttagaaagcagttcatagcatctcagatcctggctgtga
cggtcctaaatgcttcaatcgagcctcttgtggatactcaagctcaccat
catttgaagacctggcatcaagaggtcattgctgagcattcattacccac
agttcattgcatcagaagattatggtttaaagactaaccagttaatctgc
aatttcagaaagcgaatcaagttaacttagttgcacccatcaggactctg
tagcagcgggcagcactcgaccccaaaagttaagctgtcttacaaagtcc
aacccaaccaggaaggaaaaggaaaaggatgggggtctaatgtgtatctt
ctatgattctatttatacagtgcactgcaatgcttgaagaattcaacttt
ccagtgctggcaggctgacatgcatccaaaaatggccatcgatgattggt
gcttattggaaatctaccttgcaggactgtgtccataagaaattagattg
gagccaagctctaaatggctactttgaaatgtgacactattagggctact
tgaaacacatatgtgcacacacaaactcacttactaaacatacctgaaag
aggctatttgctaacaacaacacaacacacaaatcattgacaaattgtgt
gtgtgtgtgtgtgtttctaggatgagtgggactgctgctttctctgatca
tatgagtattaacaaaggacagtatcatttttggtttttactcaagggat
ggatgttgacagtttatagaattgttcattatggaggaaagccctatgct
atggaatatttttaggtagtaaatacctctgaagaagcaaatgcttccag
aaacacatcttcagccctgtgttcctttccactactcgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_74612571_74613787
seq2: B6Ng01-129D07.g_68_1257

seq1  GAATTCATTCCAGACTTTCCATTTACAGCCATTTAAGACTATTTGTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCAGACTTTCCATTTACAGCCATTTAAGACTATTTGTATTC  50

seq1  AGGAAACAAAATAACAAGGGACAGCTGTTTCCCTGTTTTGCTCTTATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACAAAATAACAAGGGACAGCTGTTTCCCTGTTTTGCTCTTATTTC  100

seq1  TAAGCTATTTGAAAACATTTAGAGAGGCTAAAAATATAAAGGAGCATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTATTTGAAAACATTTAGAGAGGCTAAAAATATAAAGGAGCATCTT  150

seq1  CTTTGTAACTTAGGATATAAGTGAGTCAGGTAAATTAGAGTCACCAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAACTTAGGATATAAGTGAGTCAGGTAAATTAGAGTCACCAACAG  200

seq1  AAAAGTCAATATTTTCTTTCTAACCTAAATTTCAATCATCAATTTCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCAATATTTTCTTTCTAACCTAAATTTCAATCATCAATTTCATTC  250

seq1  TATTTTAGCACACAGTCTTGTTCTACGTTTTTAACAAGTGATATATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGCACACAGTCTTGTTCTACGTTTTTAACAAGTGATATATATTT  300

seq1  GATCTTAACAGTTAGAAAGCAGTTCATAGCATCTCAGATCCTGGCTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAACAGTTAGAAAGCAGTTCATAGCATCTCAGATCCTGGCTGTGA  350

seq1  CGGTCCTAAATGCTTCAATCGAGCCTCTTGTGGATACTCAAGCTCACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCCTAAATGCTTCAATCGAGCCTCTTGTGGATACTCAAGCTCACCAT  400

seq1  CATTTGAAGACCTGGCATCAAGAGGTCATTGCTGAGCATTCATTACCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAGACCTGGCATCAAGAGGTCATTGCTGAGCATTCATTACCCAC  450

seq1  AGTTCATTGCATCAGAAGATTATGGTTTAAAGACTAACCAGTTAATCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTGCATCAGAAGATTATGGTTTAAAGACTAACCAGTTAATCTGC  500

seq1  AATTTCAGAAAGCGAATCAAGTTAACTTAGTTGCACCCATCAGGACTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGAAAGCGAATCAAGTTAACTTAGTTGCACCCATCAGGACTCTG  550

seq1  TAGCAGCGGGCAGCACTCGACCCCAAAAGTTAAGCTGTCTTACAAAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCGGGCAGCACTCGACCCCAAAAGTTAAGCTGTCTTACAAAGTCC  600

seq1  AACCCAACCAGGAAGGAAAAGGAAAAGGATGGGGGTCTAATGTGTATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAACCAGGAAGGAAAAGGAAAAGGATGGGGGTCTAATGTGTATCTT  650

seq1  CTATGATTCTATTTATACAGTGCACTGCAATGCTTGAAGAATTCAACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATTCTATTTATACAGTGCACTGCAATGCTTGAAGAATTCAACTTT  700

seq1  CCAGTGCTGGCAGGCTGACATGCATCCAAAAATGGCCATCGATGATTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTGGCAGGCTGACATGCATCCAAAAATGGCCATCGATGATTGGT  750

seq1  GCTTATTGGAAATCTACCTTGCAGGACTGTGTCCATAAAGAAATTAGATT  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCTTATTGGAAATCTACCTTGCAGGACTGTGTCCAT-AAGAAATTAGATT  799

seq1  GGAGCCAAGCTCTAAATGGCTACTTTGAAAATGTGACACTATTAGGGCTA  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGAGCCAAGCTCTAAATGGCTACTTTG-AAATGTGACACTATTAGGGCTA  848

seq1  CTTGAAACACATATGTGCACACACAAACTCACTTACTAAACATACCTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAACACATATGTGCACACACAAACTCACTTACTAAACATACCTGAA  898

seq1  AGAGGCTATTTGCTAACAACAACAACAACAACAACAAATCATTGACAAAT  950
      ||||||||||||||||||||||| ||||||   |||||||||||||||||
seq2  AGAGGCTATTTGCTAACAACAAC-ACAACA--CACAAATCATTGACAAAT  945

seq1  TGTGTGTGTGTGTGTGTGTTTTCTAGGATGAGTGGGACTTGCTGCTTTTC  1000
      |||||||||||||||||| ||||||||||||||||||| |||||||||  
seq2  TGTGTGTGTGTGTGTGTG-TTTCTAGGATGAGTGGGAC-TGCTGCTTT--  991

seq1  CTCTGATCCAATATGAGTATTAAACAAAGGAACAGTATCATTTTTTGTTT  1050
      ||||||||  ||||||||||| |||||||| |||||||||||||| ||||
seq2  CTCTGATC--ATATGAGTATT-AACAAAGG-ACAGTATCATTTTTGGTTT  1037

seq1  TTAACTCAAGGGATTGAGTGTGAACAGTTTTATGAAAATGTTTCATTAAG  1100
      || ||||||||||| || |||  |||| ||||| | |||  ||||||| |
seq2  TT-ACTCAAGGGATGGA-TGTTGACAG-TTTAT-AGAATTGTTCATTATG  1083

seq1  GGAGGGAAAGCCCATATGC-ATGTGATTATTTTTAGGTAAGTAAATTACC  1149
      |   ||||||||| ||||| ||| || ||||||||||| |||||| ||||
seq2  G--AGGAAAGCCC-TATGCTATG-GAATATTTTTAGGT-AGTAAA-TACC  1127

seq1  TCCCGAAAGAGCCAGATGGCTTCAGAAACACATCTGCAGCTCTGTGTTTC  1199
      |  |  ||||  || |||  | ||||||||||||| |||| ||||| |||
seq2  T--CTGAAGAAGCAAATGCTTCCAGAAACACATCTTCAGCCCTGTG-TTC  1174

seq1  CTTTTCTCACTACTCGGA  1217
      ||||   |||||||||||
seq2  CTTT--CCACTACTCGGA  1190