BAC Information

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BAC

Clone NameB6Ng01-129G17
Chromosome16 (Build37)16 (Build37)
Map Location 51,939,830 - 51,940,34144,157,800 - 44,158,913
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG639820, LOC627543
Downstream geneCblb, Alcam, LOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129G17.bB6Ng01-129G17.g
ACCDH931006DH931007
length1,0151,097
definitionDH931006|Mus musculus domesticus DNA, BAC clone: B6Ng01-129G17, 5' end.DH931007|Mus musculus domesticus DNA, BAC clone: B6Ng01-129G17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(51,939,830 - 51,940,341)(44,157,800 - 44,158,913)
sequence
gaattcatctccaactttgattttctacttggttcctaaagcggctgcat
gaaataacacttttattagcagcagtcaagagatcctgtcttactccata
gccttgcaagcatggtgagatcgtacatttgagacttcatctttttttta
aatatttttaatattttttattacgtattttcctcaattacattccaatg
ctatcccaaaagtcccccataccctcccccgcacttccctacccacccat
tcccatttttttggccctggcgttcccctgtactggggcatataaagttt
gtgtgtccaatgggcctctctttccagtgatggccgactaggccatcttt
tgatacatatgcagctagagtccagagctccggggtactggttagttcat
aatgttgttccacctatagggttgcagttccctttagctccttgggtact
ttctctagctcctccattgagagccctgtgatccatccaatagctgactg
tgagcgtccacttctgtgtttgctaggctccggcatagtctcacatgaga
cagctatatctgggtcctttcagcaaaatcttgctagtgtatgcaatggt
gtcagcgtttggaagctgattatggggtggatccctggatatggcagtct
ctagatggtccatcctttcatctcagctccaaactttgtctctgtaactc
cttccatgggtgttttgttcccaattctaagaaggggcacagtgtccaca
ctttggtcttcattcttcttgagtttcatgcgtttagcaaattgtatctt
atatcttgggtatcctaagttttgggccaatatccacttatcagtgagta
catattgtgtgagttcctttgtgattgtgttacctcactcaggatgatgc
cctccaggtctatccatttggctaggaatttcataaattcattcttttta
atagctgagtagtactccattgtgtaaatgtaccacattttctgtatcca
ttcctctgtgagggg
gaattctttgtgctaaaaaggggccttttctattagttttagacgtgtta
agttgcacagtgaggacaaatttggggaaataatgtatagatgcactcta
attctgtgtcaggacttagtaaagatagcaagtagatgtcaatttctagg
ttgatttataaggttactcatttattatttgttttattaataggaactaa
aatgttaaatcatgtcctaaacatctgtgagaaggatggcacttttgaca
atatctatctgtaagtaactaatgttcatcaagtgtctgataaattaatt
atcagtataaatccctatctgacagaaactgggatctactcactcattgt
attatttagttgaagaccccttgaaggtctgctagtctcttgataacact
aggggttgtgaaggggaggctggagaggcttcgtctgctaagagcattgg
ccgttcttccactgttcttccagagggccccaatttcattaccagcatcc
acatggtgtcttaaaatcatttgtagctccatttccagagatctgtcacc
ttcctttggtatataagtggtacacaggcatgtatgcaaacaaaaatgcc
tatacccataaaaaaaattttagaaaagaataaaatacattcattttaaa
atgttataaatccatataaaaaggcatgctatttacagatgacctatgcc
tatcttcccagtctttaaactgccctaatttacatgtctacaacaaataa
aatgctatagaagtttttattatgctgtactgtttaggaaatggtgtaga
atagtacatatgttccattcagaatgactatttttaaattcagggttggt
gaaataaatttaaattcaagttggtgggaaactgataatgtaggtgaact
acttttggtataattggtataatatatataggaacctgagataaaaccaa
atcacatttcagatttgagacattaatgccattatagttgatatatttat
tcaggtacttggattattactataagtagagtttaataagtcagaagtac
tttattgaattatacttgaataaagagccaagacactggtctggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_51939830_51940341
seq2: B6Ng01-129G17.b_189_688

seq1  TTTTTTTTAAATCAGCCTGGCTTCAGAGACCCACTAATTTGGCTTTTATT  50
      ||||||||||||                        ||||    | | ||
seq2  TTTTTTTTAAAT------------------------ATTTTTAATATTTT  26

seq1  TAATTAGGCATTTTCCTCATTTACATTTCCAATGCTACCCCAAAAGTCCC  100
      | |||| | |||||||||| ||||| ||||||||||| ||||||||||||
seq2  TTATTACGTATTTTCCTCAATTACA-TTCCAATGCTATCCCAAAAGTCCC  75

seq1  CCATAGCCTCCC------------ACCCACCCA-CCCCTACATTTTGGCC  137
      ||||| ||||||            |||||||||  |||    ||||||||
seq2  CCATACCCTCCCCCGCACTTCCCTACCCACCCATTCCCATTTTTTTGGCC  125

seq1  CTGGCGATCCCCTGTACTGGGGCATATAGAGTTTGCAAGTCCAATGGGCC  187
      |||||| ||||||||||||||||||||| ||||||   ||||||||||||
seq2  CTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGTGTGTCCAATGGGCC  175

seq1  TCTCCTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCT  237
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCT  225

seq1  AGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTA  287
      |||||| |||||||||||||||||||||||||||| ||||||||||||||
seq2  AGAGTCCAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTA  275

seq1  TAGGGCTGCAGTTCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCA  337
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTGCAGTTCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCA  325

seq1  TTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTG  387
      ||| | ||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTGAGAGCCCTGTGATCCATCCAATAGCTGACTGTGAGCGTCCACTTCTG  375

seq1  TGTTTGCTAGGCCCCGGCATAGTCTCACAGGAGACAGCTACATCTGGGTC  437
      |||||||||||| |||||||||||||||| |||||||||| |||||||||
seq2  TGTTTGCTAGGCTCCGGCATAGTCTCACATGAGACAGCTATATCTGGGTC  425

seq1  CTTTCGATAAAATCTTGCTAGTGTATGCAATGATGTCAGCGTTTGGATGC  487
      |||||   |||||||||||||||||||||||| |||||||||||||| ||
seq2  CTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGAAGC  475

seq1  TGATTATGGGGTGGATCCCTGGATA  512
      |||||||||||||||||||||||||
seq2  TGATTATGGGGTGGATCCCTGGATA  500

seq1: chr16_44157800_44158913
seq2: B6Ng01-129G17.g_65_1161

seq1  GAATTCTTTGTGCTAAAAAGGGGCCTTTTCTATTAGTTTTAGACGTGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGCTAAAAAGGGGCCTTTTCTATTAGTTTTAGACGTGTTA  50

seq1  AGTTGCACAGTGAGGACAAATTTGGGGAAATAATGTATAGATGCACTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCACAGTGAGGACAAATTTGGGGAAATAATGTATAGATGCACTCTA  100

seq1  ATTCTGTGTCAGGACTTAGTAAAGATAGCAAGTAGATGTCAATTTCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGTCAGGACTTAGTAAAGATAGCAAGTAGATGTCAATTTCTAGG  150

seq1  TTGATTTATAAGGTTACTCATTTATTATTTGTTTTATTAATAGGAACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTATAAGGTTACTCATTTATTATTTGTTTTATTAATAGGAACTAA  200

seq1  AATGTTAAATCATGTCCTAAACATCTGTGAGAAGGATGGCACTTTTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAAATCATGTCCTAAACATCTGTGAGAAGGATGGCACTTTTGACA  250

seq1  ATATCTATCTGTAAGTAACTAATGTTCATCAAGTGTCTGATAAATTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATCTGTAAGTAACTAATGTTCATCAAGTGTCTGATAAATTAATT  300

seq1  ATCAGTATAAATCCCTATCTGACAGAAACTGGGATCTACTCACTCATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTATAAATCCCTATCTGACAGAAACTGGGATCTACTCACTCATTGT  350

seq1  ATTATTTAGTTGAAGACCCCTTGAAGGTCTGCTAGTCTCTTGATAACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAGTTGAAGACCCCTTGAAGGTCTGCTAGTCTCTTGATAACACT  400

seq1  AGGGGTTGTGAAGGGGAGGCTGGAGAGGCTTCGTCTGCTAAGAGCATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTGTGAAGGGGAGGCTGGAGAGGCTTCGTCTGCTAAGAGCATTGG  450

seq1  CCGTTCTTCCACTGTTCTTCCAGAGGGCCCCAATTTCATTACCAGCATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTCTTCCACTGTTCTTCCAGAGGGCCCCAATTTCATTACCAGCATCC  500

seq1  ACATGGTGTCTTAAAATCATTTGTAGCTCCATTTCCAGAGATCTGTCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGTCTTAAAATCATTTGTAGCTCCATTTCCAGAGATCTGTCACC  550

seq1  TTCCTTTGGTATATAAGTGGTACACAGGCATGTATGCAAACAAAAATGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGGTATATAAGTGGTACACAGGCATGTATGCAAACAAAAATGCC  600

seq1  TATACCCATAAAAAAAATTTTAGAAAAGAATAAAATACATTCA-TTTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATACCCATAAAAAAAATTTTAGAAAAGAATAAAATACATTCATTTTAAA  650

seq1  ATGTTATAAATCCATATAAAAAGGCATGCTATTTACAGATGACCTATGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATAAATCCATATAAAAAGGCATGCTATTTACAGATGACCTATGCC  700

seq1  TATCTTCCCAGTCTTTAAACTGCCCTAATTTACATGTCTACAACAAATAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCCCAGTCTTTAAACTGCCCTAATTTACATGTCTACAACAAATAA  750

seq1  AATGCTATAGAAGTTTTTATTATGCTGTACTGTTTAGGAAATGGTGTAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTATAGAAGTTTTTATTATGCTGTACTGTTTAGGAAATGGTGTAGA  800

seq1  ATAGTACATATGTTCCATTCAGAATGACTATTTTTAAATTCAGGGTTGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACATATGTTCCATTCAGAATGACTATTTTTAAATTCAGGGTTGGT  850

seq1  GAATTAAATTTAAATTCAAGTTGGTGGGAAACTGATAATGTAGGTGAACT  899
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAATTTAAATTCAAGTTGGTGGGAAACTGATAATGTAGGTGAACT  900

seq1  ACTTTTGGTATAATTTGGTTATAATTATATATAAGGAACCTGAGATAAAA  949
      |||||||||||||||  | ||||| ||||||| |||||||||||||||||
seq2  ACTTTTGGTATAATT--GGTATAA-TATATAT-AGGAACCTGAGATAAAA  946

seq1  ACCAAAATCACA-TTCAGAATTTTGAGACCATTAATGCCATTAATAGTTG  998
        | |||||||| ||||||  ||||||| ||||||||||||| |||||||
seq2  --CCAAATCACATTTCAGA--TTTGAGA-CATTAATGCCATT-ATAGTTG  990

seq1  ATATATTTTATTCAAGGTAACTTGATTATTTACTATAGAGTAGAGTTTAA  1048
      ||||| ||||||| |||||  | ||||| |||||||| ||||||||||||
seq2  ATATA-TTTATTC-AGGTACTTGGATTA-TTACTATA-AGTAGAGTTTAA  1036

seq1  TAAAGTCAGAAGTAGCTTAGTTGAAATTATACTTGAATTAAGAGCCAAGA  1098
      | |||||||||||| |||  ||| |||||||||||||| |||||||||||
seq2  T-AAGTCAGAAGTA-CTTTATTG-AATTATACTTGAATAAAGAGCCAAGA  1083

seq1  CAACTGGTCGTGGTGG  1114
      | ||||||| ||||||
seq2  C-ACTGGTC-TGGTGG  1097