BAC Information

Click to search

BAC

Clone NameB6Ng01-130P22
Chromosome16 (Build37)
Map Location 25,508,266 - 25,630,887
singlet/doubletdoublet
Overlap genenone
Upstream geneLpp, A730098P11Rik, 5430420C16Rik
Downstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057, Il1rap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130P22.bB6Ng01-130P22.g
ACCDH932168DH932169
length1,04362
definitionDH932168|Mus musculus domesticus DNA, BAC clone: B6Ng01-130P22, 5' end.DH932169|Mus musculus domesticus DNA, BAC clone: B6Ng01-130P22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,508,266 - 25,509,311)(25,630,826 - 25,630,887)
sequence
gaattcagaaatctgcctgcctctgcctcccaagtgctgggattaaaggc
gtgtgccaccactgcttggcacaaatgtcattcctaatacgattttaaat
acttattgtcacatccacagcgatgtttagctaacacaccaagaagcttc
tttttgcagcagccagaaactattacagagatttagaatgggtcaaaacg
cagaaaatgagtgacggtcacatgcccagcccaggtgatgcatgtgcaat
acaggtactaaacctaaggctccctctcatgtctagtagacatgatctcc
cagcagctgaactcacaagtctcaaaatactgttgcttaaacaagacctg
cacaatgacaacactagctgatgtgttaatatggatggaagcatctctca
aggctgctcttctagatgaagggcatggccatcagttttctccagggatg
ggcctcttgataggttatctctaaacaaacgtatatgtaagtgacaccat
tatacatgcagtcagatacatatatacacatgtgtactcatctacatgca
cacatgccatacacatgtatgtaacagtagtaaggaaagaaggagagact
gtgaattgagaggggaggaggaaactcaggaattgaaggggggacaagga
gcaataaaaatggcttaactttagcactcatagaaaattctaaaaaaaat
aaagtaaacatgccaaaacaaggtacaggctgtggtggataaaagcacct
gttttacagtgtctattaaaactgtagagtaatatggattgactttgacc
ctttattttgtattgaaccatatcttattttatttacatttttcctagta
gagtaaatgtattttaacatttataaaagctacctttttttttttctttt
ttgttgtaagattcatttttccaatttacaacattttctttcactgattt
ctgcaagtcattggggacaaatggtggcaattttccaaaacctcttttcc
catgatttatttgtcgtgcttattattataaatagaggttatg
aaagttggaaactgagaacatgggggaaaatagtctctctctctctctct
ctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_25508266_25509311
seq2: B6Ng01-130P22.b_50_1092

seq1  GAATTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGC  50

seq1  GTGTGCCACCACTGCTTGGCACAAATGTCATTCCTAATACGATTTTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCACCACTGCTTGGCACAAATGTCATTCCTAATACGATTTTAAAT  100

seq1  ACTTATTGTCACATCCACAGCGATGTTTAGCTAACACACCAAGAAGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTGTCACATCCACAGCGATGTTTAGCTAACACACCAAGAAGCTTC  150

seq1  TTTTTGCAGCAGCCAGAAACTATTACAGAGATTTAGAATGGGTCAAAACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCAGCAGCCAGAAACTATTACAGAGATTTAGAATGGGTCAAAACG  200

seq1  CAGAAAATGAGTGACGGTCACATGCCCAGCCCAGGTGATGCATGTGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATGAGTGACGGTCACATGCCCAGCCCAGGTGATGCATGTGCAAT  250

seq1  ACAGGTACTAAACCTAAGGCTCCCTCTCATGTCTAGTAGACATGATCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTACTAAACCTAAGGCTCCCTCTCATGTCTAGTAGACATGATCTCC  300

seq1  CAGCAGCTGAACTCACAAGTCTCAAAATACTGTTGCTTAAACAAGACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCTGAACTCACAAGTCTCAAAATACTGTTGCTTAAACAAGACCTG  350

seq1  CACAATGACAACACTAGCTGATGTGTTAATATGGATGGAAGCATCTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGACAACACTAGCTGATGTGTTAATATGGATGGAAGCATCTCTCA  400

seq1  AGGCTGCTCTTCTAGATGAAGGGCATGGCCATCAGTTTTCTCCAGGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTCTTCTAGATGAAGGGCATGGCCATCAGTTTTCTCCAGGGATG  450

seq1  GGCCTCTTGATAGGTTATCTCTAAACAAACGTATATGTAAGTGACACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTTGATAGGTTATCTCTAAACAAACGTATATGTAAGTGACACCAT  500

seq1  TATACATGCAGTCAGATACATATATACACATGTGTACTCATCTACATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGCAGTCAGATACATATATACACATGTGTACTCATCTACATGCA  550

seq1  CACATGCCATACACATGTATGTAACAGTAGTAAGGAAAGAAGGAGAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCCATACACATGTATGTAACAGTAGTAAGGAAAGAAGGAGAGACT  600

seq1  GTGAATTGAGAGGGGAGGAGGAAACTCAGGAATTGAAGGGGGGACAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTGAGAGGGGAGGAGGAAACTCAGGAATTGAAGGGGGGACAAGGA  650

seq1  GCAATAAAAATGGCTTAACTTTAGCACTCATAGAAAATTCTAAAAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAAAATGGCTTAACTTTAGCACTCATAGAAAATTCTAAAAAAAAT  700

seq1  AAAGTAAACATGCCAAAACAAGGTACAGGCTGTGGTGGATAAAAGCACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAACATGCCAAAACAAGGTACAGGCTGTGGTGGATAAAAGCACCT  750

seq1  G-TTTACAGTGTCTATTAAAACTGTAGAGTAATATGGATTGACTTTGACC  799
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACAGTGTCTATTAAAACTGTAGAGTAATATGGATTGACTTTGACC  800

seq1  CTTTATTTTGTATTGAACCATATCTTATTTTATTTACATTTTTCCTAGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTGTATTGAACCATATCTTATTTTATTTACATTTTTCCTAGTA  850

seq1  GAGTAAATGTATTTTAACATTTATAAAAGCTACCTTTTTTTTTTTCCTTT  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGTAAATGTATTTTAACATTTATAAAAGCTACCTTTTTTTTTTTCTTTT  900

seq1  TTGTTGTAAGATTCATTTTTCCCAATTTTACAACA-TTTCTTCCACTGAT  948
      ||||||||||||||||||||||  | ||||||||| |||||| |||||||
seq2  TTGTTGTAAGATTCATTTTTCC--AATTTACAACATTTTCTTTCACTGAT  948

seq1  TTCTGCAAGTCATTGGGGACAAATGGTGGCAAATTTTCAAAAACTCTTTT  998
      |||||||||||||||||||||||||||||||| ||| ||||| |||||||
seq2  TTCTGCAAGTCATTGGGGACAAATGGTGGCAATTTTCCAAAACCTCTTTT  998

seq1  CCCATGATTTTATTTTGTCAGTGC-TATTATTATTAAATAGAGTTTATG  1046
      ||||||||||   |||||| |||| |||||||| ||||||||| |||||
seq2  CCCATGATTT--ATTTGTC-GTGCTTATTATTA-TAAATAGAGGTTATG  1043

seq1: chr16_25630826_25630887
seq2: B6Ng01-130P22.g_75_136 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGACTATTTTCCCCCATGTTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGACTATTTTCCCCCATGTTCTCA  50

seq1  GTTTCCAACTTT  62
      ||||||||||||
seq2  GTTTCCAACTTT  62