BAC Information

Click to search

BAC

Clone NameB6Ng01-131A02
Chromosome16 (Build37)
Map Location 21,770,552 - 21,879,244
singlet/doubletdoublet
Overlap geneEhhadh, LOC100043489, LOC546659
Upstream geneLOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915, 2310042E22Rik, Ephb3, 6430590I03Rik, Vps8, 2510009E07Rik
Downstream geneMap3k13, LOC624037, Tmem41a, Liph, Senp2, EG239760, Igf2bp2, EG545152, EG666421, Sfrs10, LOC100043507, Etv5, Dgkg, LOC671242, LOC666459, Crygs, Tbccd1, Dnajb11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131A02.bB6Ng01-131A02.g
ACCDH932174DH932175
length1,0511,123
definitionDH932174|Mus musculus domesticus DNA, BAC clone: B6Ng01-131A02, 5' end.DH932175|Mus musculus domesticus DNA, BAC clone: B6Ng01-131A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,770,552 - 21,771,615)(21,878,110 - 21,879,244)
sequence
gaattccaagcttgagtgcttcatctgttgaaatatgtcttcctggatca
aaaggaaataaaacaaatcaaataacagtgcgaggacccactggggcatt
gctctgtctagtggggaaggttgccattcctggagatacgaactggtaag
tgaaatgcctaaggccaacctggctactgtacttggtgatttggttttga
gactgggtctcactatgtagctctggctgcccaggaactccacacataga
ccaggctggtctcaaactcagagatccacttgtctctgactcctgagtgc
tgggattaagaggtatgaaccaccaggcccaggctgaactattgtggttg
aacatccctacagatgtggccttctttgaattaagcggtagctctgattc
ttactgttagagaaaccgcagggaactgtgcgaggactccagtttcatct
ctgataaatggaggtaattatgcttaccatagtaattctgaggattcagt
aaagggtgagtggtctctttatatccttttagaggtgtataaccctatgt
atctgtatagaagtgtgagaaatggttggattttgggctgcaaaccagga
actgtactgatcaaggagagacagtccccagacacaacgctagtgggctg
aacaggagaacctacattgattaggttggcattccaccaagtacagtgag
aaccacgtaggagaagtcagacagagttttatccctttctggctagtgag
caccttgactctgacctagattacagactgggcgagctttgcgagcctgc
ttcctacggaggtttcgaaggaagcagacaccattaaacagctgctcctt
caatgccctggcagagaagtgaagccctaatcccagacttggtggaatca
gtgctcagctgaggttcttttgcttcatcaaaccttccaaacctctcatc
cggggagagggtgggcagtcgagtgctgtcagtgtcctctgtataaagat
gccctccttagcaggcaaaagaccaagcatgaaaataaatctggtactac
a
gaattcagatttccaatgtctgggtgaccactgtctacagggtgaatgac
cagcattgccatttatgtttctgtgggcttccaagagtctaggtcctgtt
aggaaacagatggcattgtccaacggggcaaatgaaagttcaataaaatg
aatcatttacaaaggggtggacagaaaaagcacagggatggtctgtgccc
cagccagagttaacggagccactgagctatttcctagacaagggaaagaa
tgtttgctagtcttggagatcataattactggtcaccagtaagaatgttg
gtcctcgatagagcaaagtgtggtgatgtgagtgtgggccagagaaatgg
atactgagtcacaacctgcacactcccgctctccgagatcccaggggcgc
cacactgactgaacccaatagcacctaagaagcaagctatctatctccat
gcgtcaacctctgtagacgcagaacagggtgttgtgtccagccagaagca
ctgttgtgcctgagcattatagcagtggggagccctgcgaaggcagagac
atactgggcaaagctgggaacgacagctacagagctgagtccatgctgcc
aaggggcttcttgctgcgaacactgaaactactgtcggtcactggctctt
tagatgtggggaaccattagaaaatgcccttttctgcctgagcaaatgtg
tgggaactcttttttcttctaaagatggaaagtgccattattatattttg
ggtcatccatggagtatgctgaacaccatttttattactgaaaccatatg
agatccttattatgattaaatactaattgtggaggcccctttcaacacgg
gttatgaaaaattataagaaaaggcttcagcataggatttatgttaatac
taaataaatgacataaaagtgacttgtaaagctatgaagtggctggagag
atgattcagtggttgagagcacagctgctctaagacaccctgagttcatt
cccagcaccacatggcgttactgtacccagtaacagaggatctttccaca
cctccacacaacatgttaggcagacgcaatgtacattaataaataaccct
taaaaaaaagaggaagcttatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_21770552_21771615
seq2: B6Ng01-131A02.b_47_1097

seq1  GAATTCCAAGCTTGAGTGCTTCATCTGTTGAAATATGTCTTCCTGGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCTTGAGTGCTTCATCTGTTGAAATATGTCTTCCTGGATCA  50

seq1  AAAGGAAATAAAACAAATCAAATAACAGTGCGAGGACCCACTGGGGCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAATAAAACAAATCAAATAACAGTGCGAGGACCCACTGGGGCATT  100

seq1  GCTCTGTCTAGTGGGGAAGGTTGCCATTCCTGGAGATACGAACTGGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTCTAGTGGGGAAGGTTGCCATTCCTGGAGATACGAACTGGTAAG  150

seq1  TGAAATGCCTAAGGCCAACCTGGCTACTGTACTTGGTGATTTGGTTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGCCTAAGGCCAACCTGGCTACTGTACTTGGTGATTTGGTTTTGA  200

seq1  GACTGGGTCTCACTATGTAGCTCTGGCTGCCCAGGAACTCCACACATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGTCTCACTATGTAGCTCTGGCTGCCCAGGAACTCCACACATAGA  250

seq1  CCAGGCTGGTCTCAAACTCAGAGATCCACTTGTCTCTGACTCCTGAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGTCTCAAACTCAGAGATCCACTTGTCTCTGACTCCTGAGTGC  300

seq1  TGGGATTAAGAGGTATGAACCACCAGGCCCAGGCTGAACTATTGTGGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAGAGGTATGAACCACCAGGCCCAGGCTGAACTATTGTGGTTG  350

seq1  AACATCCCTACAGATGTGGCCTTCTTTGAATTAAGCGGTAGCTCTGATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCCTACAGATGTGGCCTTCTTTGAATTAAGCGGTAGCTCTGATTC  400

seq1  TTACTGTTAGAGAAACCGCAGGGAACTGTGCGAGGACTCCAGTTTCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTTAGAGAAACCGCAGGGAACTGTGCGAGGACTCCAGTTTCATCT  450

seq1  CTGATAAATGGAGGTAATTATGCTTACCATAGTAATTCTGAGGATTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAATGGAGGTAATTATGCTTACCATAGTAATTCTGAGGATTCAGT  500

seq1  AAAGGGTGAGTGGTCTCTTTATATCCTTTTAGAGGTGTATAACCCTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTGAGTGGTCTCTTTATATCCTTTTAGAGGTGTATAACCCTATGT  550

seq1  ATCTGTATAGAAGTGTGAGAAATGGTTGGATTTTGGGCTGCAAACCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTATAGAAGTGTGAGAAATGGTTGGATTTTGGGCTGCAAACCAGGA  600

seq1  ACTGTACTGATCAAGGAGAGACAGTCCCCAGACACAACGCTAGTGGGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACTGATCAAGGAGAGACAGTCCCCAGACACAACGCTAGTGGGCTG  650

seq1  AACAGGAGAACCTACATTGATTAGGTTGGCATTCCACCAAGTACAGTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAGAACCTACATTGATTAGGTTGGCATTCCACCAAGTACAGTGAG  700

seq1  AACCACGTAGGAGAAGTCAGACAGAGTTTTATCCCTTTCTGGCTAGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACGTAGGAGAAGTCAGACAGAGTTTTATCCCTTTCTGGCTAGTGAG  750

seq1  CACCTTGACTCTGACCTAGATTACAGACTGGGCGAGCTTTGCGAGCCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGACTCTGACCTAGATTACAGACTGGGCGAGCTTTGCGAGCCTGC  800

seq1  TTCCTACGGAGGTTTCGAAGGAAGCAGACACCATTAAACAGCTGCTCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACGGAGGTTTCGAAGGAAGCAGACACCATTAAACAGCTGCTCCTT  850

seq1  CAATGCCCTGGCAGAGAAGTGAAGCCCTAATCCCAGACTTGGTGGAATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCCTGGCAGAGAAGTGAAGCCCTAATCCCAGACTTGGTGGAATCA  900

seq1  GTGCTCAGCTGAGGGTTCTTTTGCTTCATCAAAACCTTCCAAACCTCCTC  950
      |||||||||||| ||||||||||||||||| ||||||||||||||| |||
seq2  GTGCTCAGCTGA-GGTTCTTTTGCTTCATC-AAACCTTCCAAACCT-CTC  947

seq1  ATCCGGGGAGAGGGGTGGGGCAGTCGAGTGCTGTCAAGTGTCCTCTGTAT  1000
      ||||||||||||||   |||||||||||||||||| ||||||||||||||
seq2  ATCCGGGGAGAGGG--TGGGCAGTCGAGTGCTGTC-AGTGTCCTCTGTAT  994

seq1  AAAGATGCCCTCCTTAGGCAGGGCAAAAAGACCAAGGCATGGAAAATAAA  1050
      |||||||||||||||| |||||   |||||||||| |||| |||||| ||
seq2  AAAGATGCCCTCCTTA-GCAGG--CAAAAGACCAA-GCAT-GAAAAT-AA  1038

seq1  ATCTGGGCACTACA  1064
      |||| || ||||||
seq2  ATCT-GGTACTACA  1051

seq1: chr16_21878110_21879244
seq2: B6Ng01-131A02.g_69_1191 (reverse)

seq1  TCATAAGCTCTCTCTTTTTTTTTTAAGGTTTATTTATTTTTATGTACATT  50
      |||||||||  |||  |||||||||||| |||||||  || |||||||||
seq2  TCATAAGCTTCCTC--TTTTTTTTAAGGGTTATTTA--TTAATGTACATT  46

seq1  GGTGTTCTGCCT-ACATGTT-TGTGTGAGTGTGG-AAGATCCTCTGTTAC  97
      |    ||||||| ||||||| ||||   |||||| |||||||||||||||
seq2  G--CGTCTGCCTAACATGTTGTGTGGAGGTGTGGAAAGATCCTCTGTTAC  94

seq1  TGGGGTTACAGTAACCGCCATGTGGGTGCTGGGAATTGAACTCAGGGTGT  147
      ||||  |||||||| |||||||| ||||||||||| ||||||||||||||
seq2  TGGG--TACAGTAA-CGCCATGT-GGTGCTGGGAA-TGAACTCAGGGTGT  139

seq1  CTTTAAGAGCAGCCTGTGCTCTCAACCACTGAATCATCTCTCCAGCCCAC  197
      |||  ||||||| |||||||||||||||||||||||||||||||| ||||
seq2  CTT--AGAGCAG-CTGTGCTCTCAACCACTGAATCATCTCTCCAG-CCAC  185

seq1  TTCATAGCTTTACAAGTCACTTTTATGTCATTTATTTAGTATTAACATAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGCTTTACAAGTCACTTTTATGTCATTTATTTAGTATTAACATAA  235

seq1  ATCCTATGCTGAAGCCTTTTCTTATAATTTTTCATAACCCGTGTTGAAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATGCTGAAGCCTTTTCTTATAATTTTTCATAACCCGTGTTGAAAG  285

seq1  GGGCCTCCACAATTAGTATTTAATCATAATAAGGATCTCATATGGTTTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCCACAATTAGTATTTAATCATAATAAGGATCTCATATGGTTTCA  335

seq1  GTAATAAAAATGGTGTTCAGCATACTCCATGGATGACCCAAAATATAATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAAAATGGTGTTCAGCATACTCCATGGATGACCCAAAATATAATA  385

seq1  ATGGCACTTTCCATCTTTAGAAGAAAAAAGAGTTCCCACACATTTGCTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACTTTCCATCTTTAGAAGAAAAAAGAGTTCCCACACATTTGCTCA  435

seq1  GGCAGAAAAGGGCATTTTCTAATGGTTCCCCACATCTAAAGAGCCAGTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAAAGGGCATTTTCTAATGGTTCCCCACATCTAAAGAGCCAGTGA  485

seq1  CCGACAGTAGTTTCAGTGTTCGCAGCAAGAAGCCCCTTGGCAGCATGGAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACAGTAGTTTCAGTGTTCGCAGCAAGAAGCCCCTTGGCAGCATGGAC  535

seq1  TCAGCTCTGTAGCTGTCGTTCCCAGCTTTGCCCAGTATGTCTCTGCCTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCTGTAGCTGTCGTTCCCAGCTTTGCCCAGTATGTCTCTGCCTTC  585

seq1  GCAGGGCTCCCCACTGCTATAATGCTCAGGCACAACAGTGCTTCTGGCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCTCCCCACTGCTATAATGCTCAGGCACAACAGTGCTTCTGGCTG  635

seq1  GACACAACACCCTGTTCTGCGTCTACAGAGGTTGACGCATGGAGATAGAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAACACCCTGTTCTGCGTCTACAGAGGTTGACGCATGGAGATAGAT  685

seq1  AGCTTGCTTCTTAGGTGCTATTGGGTTCAGTCAGTGTGGCGCCCCTGGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCTTCTTAGGTGCTATTGGGTTCAGTCAGTGTGGCGCCCCTGGGA  735

seq1  TCTCGGAGAGCGGGAGTGTGCAGGTTGTGACTCAGTATCCATTTCTCTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGAGAGCGGGAGTGTGCAGGTTGTGACTCAGTATCCATTTCTCTGG  785

seq1  CCCACACTCACATCACCACACTTTGCTCTATCGAGGACCAACATTCTTAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACTCACATCACCACACTTTGCTCTATCGAGGACCAACATTCTTAC  835

seq1  TGGTGACCAGTAATTATGATCTCCAAGACTAGCAAACATTCTTTCCCTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACCAGTAATTATGATCTCCAAGACTAGCAAACATTCTTTCCCTTG  885

seq1  TCTAGGAAATAGCTCAGTGGCTCCGTTAACTCTGGCTGGGGCACAGACCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAAATAGCTCAGTGGCTCCGTTAACTCTGGCTGGGGCACAGACCA  935

seq1  TCCCTGTGCTTTTTCTGTCCACCCCTTTGTAAATGATTCATTTTATTGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGCTTTTTCTGTCCACCCCTTTGTAAATGATTCATTTTATTGAA  985

seq1  CTTTCATTTGCCCCGTTGGACAATGCCATCTGTTTCCTAACAGGACCTAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTTGCCCCGTTGGACAATGCCATCTGTTTCCTAACAGGACCTAG  1035

seq1  ACTCTTGGAAGCCCACAGAAACATAAATGGCAATGCTGGTCATTCACCCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGGAAGCCCACAGAAACATAAATGGCAATGCTGGTCATTCACCCT  1085

seq1  GTAGACAGTGGTCACCCAGACATTGGAAATCTGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAGTGGTCACCCAGACATTGGAAATCTGAATTC  1123