BAC Information

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BAC

Clone NameB6Ng01-131C23
Chromosome16 (Build37)
Map Location 89,689,033 - 89,819,863
singlet/doubletdoublet
Overlap geneTiam1
Upstream gene2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
Downstream geneLOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131C23.bB6Ng01-131C23.g
ACCDH932307DH932308
length1,1341,090
definitionDH932307|Mus musculus domesticus DNA, BAC clone: B6Ng01-131C23, 5' end.DH932308|Mus musculus domesticus DNA, BAC clone: B6Ng01-131C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,818,721 - 89,819,863)(89,689,033 - 89,690,125)
sequence
gaattcattcattttgaagtgtatgctgctgtaacctggaagagaatatt
aagcctcatcagaatgcacacacactcatcaagcagagagagccgtacct
agtaaataaatagaaactgggtggcgacgtggctcagcaggttaaggaac
ccgacccctaacttgaccacctgatttccatccctgggacccacatgata
gaagaggccgactgctgcaaattgtcttctaacctccacacatggaccgt
aacatgccctgcacccaatcacgcctgcccccaacagaataatgaaataa
attatttttcctccttgcttcgattttttaaaagacagggtcttactggc
ccgcatagagctaactatgttgacctgaccccactggcctcaaactcata
gagatcagccagtcttctgggattaaaggtgtgcgccaccatggcccgct
gtgttatcagtttttattctgctgggaaacgtgaggccggagaccccgtg
attgtcttcttcctatttttttattttcttttttgtttattattattatt
ttgctgtttccttccaaatgagctggatggagggtaaaagctgtggctgt
gctctgtcttttaaatgcggtttagccatgcctggccgtttggagctgag
caagtgggtaatggtgagcttgttctctggagatgattcaggaatgtcgc
actgatgggtggggttgtcacaaggcaggggaatgtagtcacctctccct
ttgtcactgcctccttcctctggtggcatggtgacagcctcaggtctcct
catccactgggtaacttactcccctttacaacttcttgaaaactcttgct
tgtggaatgaaatgctaattaacctagtcagaggagcccagcgtcctgtc
ctgtgttccaggctctctggtggctctggcttttctgagttttccagtta
gaaaatgtattagaataatttttttttctggctttttcattcactacacg
tacccttttccaccatgttgtaatcacctgggaagtatcaggttttcgta
ataagcatctgtaaatgctgcagaccgcccagtgaagacctgtcttgtgt
ggtggggcctcgaagtggcgctatctggcacttt
gaattctcttcaaaatgtaaaactaccttctgcctcttatctgcagcttg
gggcctttaactgaaagtacttacaaggggaagagtcattttcagaatcc
tgttaatctgtgactttattagaaatagtagcacttaaactctggacagc
ctaagatgttagccaggttgataaaagctagacatttctgcacccactgg
aactcacctagctggtgactacggaaggttacataaacgctgtgcagtga
atgcagtaagaaacctcctagacacaagcatcataaagacactcttagga
ccctaccactcttgttcatcccagaataaaaggaggaaacaaacagcatc
ctaattttcaaagatggagagaatgaggggagtaaacacctcaataaagt
agaaacatatctgtgatggtttgtatatccttggacccgggagtggcacc
atctggaggtgtggccttgttggaataggtgtgacctggttggaatgggt
gtgtcactgtgggtgtgggcataagatcctcaccctagttgcctggaagt
cagtcttccactagcagcctttggatgaagacatagaattctcagctcct
actgcaccatgcctgcctggatgctgccatgttcccaccttgatggtaat
ggactgaacctctgaatctgtaagccagccccagttaaatgttgtttttt
ataagacttgccttggttgtggtgtctgttcacagcagtaacaccctaac
taatacaatatcccaagtcacatggaaaagaaaggcaacagagattcccc
aatccaactcaacattctaacactttgtcccgagtaagcccctcccatca
tcctgatgcccaggaaatccagcccagcaccaactgagacatacctatat
tccgagtcctgcctgaggtccagagtggtcaacttacattagggatcctc
tcaatgctcagcatcatcattcacgacatgttccccatgggatggatcta
cagttcagtgaaggaggacatgccaatgtgttaggagtggtctatcatta
aacagcctttagcagatgaggataaaactgaagctatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89818721_89819863
seq2: B6Ng01-131C23.b_48_1181 (reverse)

seq1  AAAGTGCCCAGATAGCGCAACTTCGAGGCTCCCCACCACACAGACCAGGT  50
      |||||| ||||||||||| |||||||||  ||||||||||||   |||||
seq2  AAAGTG-CCAGATAGCGCCACTTCGAGG--CCCCACCACACAAGACAGGT  47

seq1  CTTTCAACTGGGCGCGCCCTGCAGCATTTTACAGATGCTTAATTACGAAA  100
      |||   |||||  |||  |||||||| ||||||||||||| |||||||||
seq2  CTT--CACTGG--GCGGTCTGCAGCA-TTTACAGATGCTT-ATTACGAAA  91

seq1  A-CTGATACTTCCCAGGTGATTACAACATGTGTGAAAAGGGTACGTGGTA  149
      | ||||||||||||||||||||||||||||   ||||||||||||| |||
seq2  ACCTGATACTTCCCAGGTGATTACAACATGGTGGAAAAGGGTACGT-GTA  140

seq1  GTGAATGAAAAAGCCAG-AAAAAAAATTATTCTAATACATTTTCTAACTG  198
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTGAATGAAAAAGCCAGAAAAAAAAATTATTCTAATACATTTTCTAACTG  190

seq1  GAAAACTCAGAAAAGCCAGAGCCACCAGAGAGCCTGGAACACAGGACAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCAGAAAAGCCAGAGCCACCAGAGAGCCTGGAACACAGGACAGG  240

seq1  ACGCTGGGCTCCTCTGACCTAGGTTAATTAGCATTTCATTCCACAAGCAA  298
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACGCTGGGCTCCTCTGA-CTAGGTTAATTAGCATTTCATTCCACAAGCAA  289

seq1  GAGTTTTCAAGAAGTTGTAAAGGGGAGTAAGTTACCCAGTGGATGAGGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTCAAGAAGTTGTAAAGGGGAGTAAGTTACCCAGTGGATGAGGAG  339

seq1  ACCTGAGGCTGTCACCATGCCACCAGAGGAAGGAGGCAGTGACAAAGGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGGCTGTCACCATGCCACCAGAGGAAGGAGGCAGTGACAAAGGGA  389

seq1  GAGGTGACTACATTCCCCTGCCTTGTGACAACCCCACCCATCAGTGCGAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGACTACATTCCCCTGCCTTGTGACAACCCCACCCATCAGTGCGAC  439

seq1  ATTCCTGAATCATCTCCAGAGAACAAGCTCACCATTACCCACTTGCTCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGAATCATCTCCAGAGAACAAGCTCACCATTACCCACTTGCTCAG  489

seq1  CTCCAAACGGCCAGGCATGGCTAAACCGCATTTAAAAGACAGAGCACAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAACGGCCAGGCATGGCTAAACCGCATTTAAAAGACAGAGCACAGC  539

seq1  CACAGCTTTTACCCTCCATCCAGCTCATTTGGAAGGAAACAGCAAAATAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTTTACCCTCCATCCAGCTCATTTGGAAGGAAACAGCAAAATAA  589

seq1  TAATAATAAACAAAAAAGAAAATAAAAAAATAGGAAGAAGACAATCACGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAAACAAAAAAGAAAATAAAAAAATAGGAAGAAGACAATCACGG  639

seq1  GGTCTCCGGCCTCACGTTTCCCAGCAGAATAAAAACTGATAACACAGCGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCGGCCTCACGTTTCCCAGCAGAATAAAAACTGATAACACAGCGG  689

seq1  GCCATGGTGGCGCACACCTTTAATCCCAGAAGACTGGCTGATCTCTATGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGTGGCGCACACCTTTAATCCCAGAAGACTGGCTGATCTCTATGA  739

seq1  GTTTGAGGCCAGTGGGGTCAGGTCAACATAGTTAGCTCTATGCGGGCCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGGCCAGTGGGGTCAGGTCAACATAGTTAGCTCTATGCGGGCCAG  789

seq1  TAAGACCCTGTCTTTTAAAAAATCGAAGCAAGGAGGAAAAATAATTTATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCCTGTCTTTTAAAAAATCGAAGCAAGGAGGAAAAATAATTTATT  839

seq1  TCATTATTCTGTTGGGGGCAGGCGTGATTGGGTGCAGGGCATGTTACGGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTCTGTTGGGGGCAGGCGTGATTGGGTGCAGGGCATGTTACGGT  889

seq1  CCATGTGTGGAGGTTAGAAGACAATTTGCAGCAGTCGGCCTCTTCTATCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTGGAGGTTAGAAGACAATTTGCAGCAGTCGGCCTCTTCTATCA  939

seq1  TGTGGGTCCCAGGGATGGAAATCAGGTGGTCAAGTTAGGGGTCGGGTTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTCCCAGGGATGGAAATCAGGTGGTCAAGTTAGGGGTCGGGTTCC  989

seq1  TTAACCTGCTGAGCCACGTCGCCACCCAGTTTCTATTTATTTACTAGGTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTGCTGAGCCACGTCGCCACCCAGTTTCTATTTATTTACTAGGTA  1039

seq1  CGGCTCTCTCTGCTTGATGAGTGTGTGTGCATTCTGATGAGGCTTAATAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCTCTCTGCTTGATGAGTGTGTGTGCATTCTGATGAGGCTTAATAT  1089

seq1  TCTCTTCCAGGTTACAGCAGCATACACTTCAAAATGAATGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCAGGTTACAGCAGCATACACTTCAAAATGAATGAATTC  1134

seq1: chr16_89689033_89690125
seq2: B6Ng01-131C23.g_64_1153

seq1  GAATTCTCTTCAAAATGTAAAACTACCTTCTGCCTCTTATCTGCAGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCAAAATGTAAAACTACCTTCTGCCTCTTATCTGCAGCTTG  50

seq1  GGGCCTTTAACTGAAAGTACTTACAAGGGGAAGAGTCATTTTCAGAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTTAACTGAAAGTACTTACAAGGGGAAGAGTCATTTTCAGAATCC  100

seq1  TGTTAATCTGTGACTTTATTAGAAATAGTAGCACTTAAACTCTGGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATCTGTGACTTTATTAGAAATAGTAGCACTTAAACTCTGGACAGC  150

seq1  CTAAGATGTTAGCCAGGTTGATAAAAGCTAGACATTTCTGCACCCACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATGTTAGCCAGGTTGATAAAAGCTAGACATTTCTGCACCCACTGG  200

seq1  AACTCACCTAGCTGGTGACTACGGAAGGTTACATAAACGCTGTGCAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACCTAGCTGGTGACTACGGAAGGTTACATAAACGCTGTGCAGTGA  250

seq1  ATGCAGTAAGAAACCTCCTAGACACAAGCATCATAAAGACACTCTTAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTAAGAAACCTCCTAGACACAAGCATCATAAAGACACTCTTAGGA  300

seq1  CCCTACCACTCTTGTTCATCCCAGAATAAAAGGAGGAAACAAACAGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACCACTCTTGTTCATCCCAGAATAAAAGGAGGAAACAAACAGCATC  350

seq1  CTAATTTTCAAAGATGGAGAGAATGAGGGGAGTAAACACCTCAATAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTCAAAGATGGAGAGAATGAGGGGAGTAAACACCTCAATAAAGT  400

seq1  AGAAACATATCTGTGATGGTTTGTATATCCTTGGACCCGGGAGTGGCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATATCTGTGATGGTTTGTATATCCTTGGACCCGGGAGTGGCACC  450

seq1  ATCTGGAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAGGTGTGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAATGGGT  500

seq1  GTGTCACTGTGGGTGTGGGCATAAGATCCTCACCCTAGTTGCCTGGAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACTGTGGGTGTGGGCATAAGATCCTCACCCTAGTTGCCTGGAAGT  550

seq1  CAGTCTTCCACTAGCAGCCTTTGGATGAAGACATAGAATTCTCAGCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTCCACTAGCAGCCTTTGGATGAAGACATAGAATTCTCAGCTCCT  600

seq1  ACTGCACCATGCCTGCCTGGATGCTGCCATGTTCCCACCTTGATGGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACCATGCCTGCCTGGATGCTGCCATGTTCCCACCTTGATGGTAAT  650

seq1  GGACTGAACCTCTGAATCTGTAAGCCAGCCCCAGTTAAATGTTGTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGAACCTCTGAATCTGTAAGCCAGCCCCAGTTAAATGTTGTTTTTT  700

seq1  ATAAGACTTGCCTTGGTTGTGGTGTCTGTTCACAGCAGTAACACCCTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACTTGCCTTGGTTGTGGTGTCTGTTCACAGCAGTAACACCCTAAC  750

seq1  TAATACAATATCCCAAGTCACATGGAAAAG-AAGGCAACAGAGATTCCCC  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAATACAATATCCCAAGTCACATGGAAAAGAAAGGCAACAGAGATTCCCC  800

seq1  AATCCAACTCAACATTCTAACACTTTGTCCCGAGTAAGCCCCTCCCATCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAACTCAACATTCTAACACTTTGTCCCGAGTAAGCCCCTCCCATCA  850

seq1  TCCTGATGCCCAGGAAATCCAGCCCAGCACCAACTGAGACATACCTATAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATGCCCAGGAAATCCAGCCCAGCACCAACTGAGACATACCTATAT  900

seq1  TCCGAGTCCTGCCTGAGGTCCAGAGTGGTCAACTTACA-TAGGGATCCTT  948
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  TCCGAGTCCTGCCTGAGGTCCAGAGTGGTCAACTTACATTAGGGATCC-T  949

seq1  CTCAATGCTCAGCATCAATCAATCACGACATGTTCCCCATGGGATGGATC  998
      |||||||||||||||| |||| ||||||||||||||||||||||||||||
seq2  CTCAATGCTCAGCATC-ATCATTCACGACATGTTCCCCATGGGATGGATC  998

seq1  TACAGTTCAGTGAAAGGAGGACATGCAAATGTGTAAGGAGTGG-CTATCA  1047
      |||||||||||| ||||||||||||| ||||||| |||||||| ||||||
seq2  TACAGTTCAGTG-AAGGAGGACATGCCAATGTGTTAGGAGTGGTCTATCA  1047

seq1  GTAAAACAGCACTTAGCAGATGAGGGAATAAAACTGAGACTATCTA  1093
       | |||||||  |||||||||||||  ||||||||||  |||||||
seq2  -TTAAACAGCCTTTAGCAGATGAGG--ATAAAACTGAAGCTATCTA  1090