BAC Information

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BAC

Clone NameB6Ng01-131E11
Chromosome16 (Build37)
Map Location 53,402,861 - 53,553,712
singlet/doubletdoublet
Overlap genenone
Upstream geneAlcam, LOC100043430, LOC667895
Downstream geneLOC433027, LOC100043442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131E11.bB6Ng01-131E11.g
ACCDH932375DH932376
length1,1911,090
definitionDH932375|Mus musculus domesticus DNA, BAC clone: B6Ng01-131E11, 5' end.DH932376|Mus musculus domesticus DNA, BAC clone: B6Ng01-131E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,552,513 - 53,553,712)(53,402,861 - 53,403,974)
sequence
gaattcactactgacccagcaaacctggttaaagaatccagcagtgatcc
aaggttctgcacaaataatgaaataattaataatattctgtttctcaaga
aatttaaacggacatttctccattaatcatcataaagaaccacaagaaac
tccgagtttatttggtttatttatattttgaaaatacacattttctgtga
agagttttttcctacatcctcctgatttcctgtcattcattcaatttctt
actactgaataaccccatactgtttggaaagctgacctcagtttttgaaa
taaagaaggctagtctaagaatattcttatttcaataaatgtattgaact
aactatattggaaaaaagtaatattattttatttgctaattgtcagtaaa
aaatgcggtcactagataacagtttacataatatttttggcaattatttt
tcacttctacaaatgttattagtcacatgaaggaattatggtatgtgatt
cttatctagagtggagatgataaaagacatgattgtattgccatgcatct
acacaatacatttgcagaaattctaccactaacagtgataggggaagtag
gacttatgagatggttatatatagaagttaatgacttcttgaatgaaagt
aatgtcctcatgaaataagtccctcaaagctgtctcgcctatttaccctc
atgatgacataacaaaggaatacttcctgtgaatcaaggaaccagcctat
gactttttcttggatttttcatcttccccacagttaagcattatactcta
tggtatactgtcataacactccacatagattaggatgctatcatgatgat
tctctaggcatcgttctaaccttcagtctatgactgaaatgaaaaacaaa
actaaaacaactatattcttaacatggtagagcccttgctaaagcaacca
attcttaagagtagatcacatctctgcaccagtaactaccaattgcaaat
caaggaccaacaagggctgtaacctggagagtgtttctttcatctatgac
aacattttgtctggcttgattcattgtagatctttttgcaggcaaccgag
gcagctggagttggttagcatgtccattacgtagacatcccttccaacaa
tcttttccacatcgattttacatacttccagtctctgtgaa
gaattctgtgtactacattttaaaatgtaatgctctgttggcagtgactt
gagtgtttaagtatttaggtcttgtatgttagtcagcacttacgcagtag
ttacacattccaggcatcccaccttttagtagaagtgcatgataataata
aaataaaaaaaatagtatcttactgttaaaatgggcacttgcatttttta
aggcacttgaagagaggcaaaatcattctaaattagatgaacttccagtt
aagtccactttcgtgtttgctttttcattcttagtgttattttatgattc
acatatgcgtgattatataataaagtgacttcaaaatgtaaagcgcacaa
agatggcaggctactagacttagtgaatacataatagaaaatataaaaac
tgaaggcattgcggtgcatttttctggtacaaaactcaattttctcctga
gatgtatgagggctcatggtggagacatataaaatgcttccaaacttatg
tattgaattttattcttttcagcacagtagagaggctttctagtgagaaa
atgtgaaagttaataatctcagtttcaatacaccctgtgggtttccaatt
ctctgttactttagccaacttgatttctaaacaagaagaaaattgactct
acattggttctacggggagaaaagcaaatgcatatgagatatgatgtatg
atatgatgtatggccacagactgagctccccagtctttttgtattatttt
cttagaaataagtaatttgaaaaattctcaaagtatatccagggattagt
ggactttattctttttgttgttcttaattagtattctacttcttacatag
agtcatgtgtatttctgaaattttcttagggacttttgggtatggatctg
gctatgttagtaaccagttgcatgtaaatgtttgtaacttccaaatttac
ttggcattgatctgtttcacagtgaaggcatgcacacaccctcttgctat
tttttcaagtacctatgtccaaccctcccaataagagattgacagagctc
cctactacttagaccgccaaaatttgctcagctgggaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_53552513_53553712
seq2: B6Ng01-131E11.b_45_1235 (reverse)

seq1  TTCACAGAGAACTGGGAAGTATGTAAGATCTGAAGTTGAGAAAGAGTGTT  50
      ||||||||| ||| |||||||||||| ||| || || || ||||| ||||
seq2  TTCACAGAG-ACT-GGAAGTATGTAAAATC-GATGTGGA-AAAGATTGTT  46

seq1  GTGGAGTGATGTCTACTGAATGTGACATGGCTAACACAAACTCCAGCTGC  100
      | | || |||||||||  |||| ||||| ||||  || ||||||||||||
seq2  G-GAAGGGATGTCTACGTAATG-GACAT-GCTA--ACCAACTCCAGCTGC  91

seq1  TCTGTTTGCCTGC-AGAAGATCTACAATGGATCAAGCCAGACAAAATGTT  149
         | |||||||| | ||||||||||||| ||||||||||||||||||||
seq2  CTCGGTTGCCTGCAAAAAGATCTACAATGAATCAAGCCAGACAAAATGTT  141

seq1  GTCATAGATGAAAGAAACACTCTCCAGGTTACAGCCCTTGTTGGTCCTTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGATGAAAGAAACACTCTCCAGGTTACAGCCCTTGTTGGTCCTTG  191

seq1  ATTTGCAATTGGTAGTTACTGGTTGCAGAGATGTGATCTACTCTTAAGAA  249
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTTGCAATTGGTAGTTACTGG-TGCAGAGATGTGATCTACTCTTAAGAA  240

seq1  TTGGTTGCTTTAGCAAGGGCTCTACCATGTTAAGAATATAGTTGTTTTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGCTTTAGCAAGGGCTCTACCATGTTAAGAATATAGTTGTTTTAG  290

seq1  TTTTGTTTTTCATTTCAGTCATAGACTGAAGGTTAGAACGATGCCTAGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTCATTTCAGTCATAGACTGAAGGTTAGAACGATGCCTAGAG  340

seq1  AATCATCATGATAGCATCCTAATCTATGTGGAGTGTTATGACAGTATACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCATGATAGCATCCTAATCTATGTGGAGTGTTATGACAGTATACC  390

seq1  ATAGAGTATAATGCTTAACTGTGGGGAAGATGAAAAATCCAAGAAAAAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTATAATGCTTAACTGTGGGGAAGATGAAAAATCCAAGAAAAAGT  440

seq1  CATAGGCTGGTTCCTTGATTCACAGGAAGTATTCCTTTGTTATGTCATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCTGGTTCCTTGATTCACAGGAAGTATTCCTTTGTTATGTCATCA  490

seq1  TGAGGGTAAATAGGCGAGACAGCTTTGAGGGACTTATTTCATGAGGACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTAAATAGGCGAGACAGCTTTGAGGGACTTATTTCATGAGGACAT  540

seq1  TACTTTCATTCAAGAAGTCATTAACTTCTATATATAACCATCTCATAAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCATTCAAGAAGTCATTAACTTCTATATATAACCATCTCATAAGT  590

seq1  CCTACTTCCCCTATCACTGTTAGTGGTAGAATTTCTGCAAATGTATTGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTCCCCTATCACTGTTAGTGGTAGAATTTCTGCAAATGTATTGTG  640

seq1  TAGATGCATGGCAATACAATCATGTCTTTTATCATCTCCACTCTAGATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCATGGCAATACAATCATGTCTTTTATCATCTCCACTCTAGATAA  690

seq1  GAATCACATACCATAATTCCTTCATGTGACTAATAACATTTGTAGAAGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACATACCATAATTCCTTCATGTGACTAATAACATTTGTAGAAGTG  740

seq1  AAAAATAATTGCCAAAAATATTATGTAAACTGTTATCTAGTGACCGCATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATTGCCAAAAATATTATGTAAACTGTTATCTAGTGACCGCATT  790

seq1  TTTTACTGACAATTAGCAAATAAAATAATATTACTTTTTTCCAATATAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGACAATTAGCAAATAAAATAATATTACTTTTTTCCAATATAGT  840

seq1  TAGTTCAATACATTTATTGAAATAAGAATATTCTTAGACTAGCCTTCTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAATACATTTATTGAAATAAGAATATTCTTAGACTAGCCTTCTTT  890

seq1  ATTTCAAAAACTGAGGTCAGCTTTCCAAACAGTATGGGGTTATTCAGTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAAAACTGAGGTCAGCTTTCCAAACAGTATGGGGTTATTCAGTAG  940

seq1  TAAGAAATTGAATGAATGACAGGAAATCAGGAGGATGTAGGAAAAAACTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATTGAATGAATGACAGGAAATCAGGAGGATGTAGGAAAAAACTC  990

seq1  TTCACAGAAAATGTGTATTTTCAAAATATAAATAAACCAAATAAACTCGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGAAAATGTGTATTTTCAAAATATAAATAAACCAAATAAACTCGG  1040

seq1  AGTTTCTTGTGGTTCTTTATGATGATTAATGGAGAAATGTCCGTTTAAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTGTGGTTCTTTATGATGATTAATGGAGAAATGTCCGTTTAAAT  1090

seq1  TTCTTGAGAAACAGAATATTATTAATTATTTCATTATTTGTGCAGAACCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGAAACAGAATATTATTAATTATTTCATTATTTGTGCAGAACCT  1140

seq1  TGGATCACTGCTGGATTCATTAACCAGGTTTGCTGGGTCAGTAGTGAATT  1199
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGGATCACTGCTGGATTCTTTAACCAGGTTTGCTGGGTCAGTAGTGAATT  1190

seq1  C  1200
      |
seq2  C  1191

seq1: chr16_53402861_53403974
seq2: B6Ng01-131E11.g_71_1160

seq1  GAATTCTGTGTACTACATTTTAAAATGTAATGCTCTGTTGGCAGTGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTACTACATTTTAAAATGTAATGCTCTGTTGGCAGTGACTT  50

seq1  GAGTGTTTAAGTATTTAGGTCTTGTATGTTAGTCAGCACTTACGCAGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTAAGTATTTAGGTCTTGTATGTTAGTCAGCACTTACGCAGTAG  100

seq1  TTACACATTCCAGGCATCCCACCTTTTAGTAGAAGTGCATGATAATAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACATTCCAGGCATCCCACCTTTTAGTAGAAGTGCATGATAATAATA  150

seq1  AAATAAAAAAAATAGTATCTTACTGTTAAAATGGGCACTTGCATTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAAAATAGTATCTTACTGTTAAAATGGGCACTTGCATTTTTTA  200

seq1  AGGCACTTGAAGAGAGGCAAAATCATTCTAAATTAGATGAACTTCCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTTGAAGAGAGGCAAAATCATTCTAAATTAGATGAACTTCCAGTT  250

seq1  AAGTCCACTTTCGTGTTTGCTTTTTCATTCTTAGTGTTATTTTATGATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCACTTTCGTGTTTGCTTTTTCATTCTTAGTGTTATTTTATGATTC  300

seq1  ACATATGCGTGATTATATAATAAAGTGACTTCAAAATGTAAAGCGCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGCGTGATTATATAATAAAGTGACTTCAAAATGTAAAGCGCACAA  350

seq1  AGATGGCAGGCTACTAGACTTAGTGAATACATAATAGAAAATATAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCAGGCTACTAGACTTAGTGAATACATAATAGAAAATATAAAAAC  400

seq1  TGAAGGCATTGCGGTGCATTTTTCTGGTACAAAACTCAATTTTCTCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCATTGCGGTGCATTTTTCTGGTACAAAACTCAATTTTCTCCTGA  450

seq1  GATGTATGAGGGCTCATGGTGGAGACATATAAAATGCTTCCAAACTTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATGAGGGCTCATGGTGGAGACATATAAAATGCTTCCAAACTTATG  500

seq1  TATTGAATTTTATTCTTTTCAGCACAGTAGAGAGGCTTTCTAGTGAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATTTTATTCTTTTCAGCACAGTAGAGAGGCTTTCTAGTGAGAAA  550

seq1  ATGTGAAAGTTAATAATCTCAGTTTCAATACACCCTGTGGGTTTCCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAAGTTAATAATCTCAGTTTCAATACACCCTGTGGGTTTCCAATT  600

seq1  CTCTGTTACTTTAGCCAACTTGATTTCTAAACAAGAAGAAAATTGACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTACTTTAGCCAACTTGATTTCTAAACAAGAAGAAAATTGACTCT  650

seq1  ACATTGGTTCTACGGGGAGAAAAGCAAATGCATATGAGATATGATGTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGTTCTACGGGGAGAAAAGCAAATGCATATGAGATATGATGTATG  700

seq1  ATATGATGTATGGCCACAGACTGAGCTCCCCAGTCTTTTTGTATTATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATGTATGGCCACAGACTGAGCTCCCCAGTCTTTTTGTATTATTTT  750

seq1  CTTAGAAATAAGTAA-TTGAAAAATTCTCAAAGTATATCCAGGGATTAGT  799
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTAGAAATAAGTAATTTGAAAAATTCTCAAAGTATATCCAGGGATTAGT  800

seq1  GGACTTTATTCTTTTTGTTGTTCTTAATTAGTATTCTACTTCTTACATAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTATTCTTTTTGTTGTTCTTAATTAGTATTCTACTTCTTACATAG  850

seq1  AGTCAATGTGTATTTCTGAAATTTTCTTAGGGACTTTTGGGTATGGATCT  899
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTC-ATGTGTATTTCTGAAATTTTCTTAGGGACTTTTGGGTATGGATC-  898

seq1  TGGCTTATGTTAAGTAACCAGTTGCATGTAAAATGTTTGTACACTTCCAA  949
      |||| |||||| ||||||||||||||||| ||||||||||| ||||||||
seq2  TGGC-TATGTT-AGTAACCAGTTGCATGT-AAATGTTTGTA-ACTTCCAA  944

seq1  AATTTTACTTGGCATTGATCTGTTTTTCAGAGTGAGGGCATGGCACACAC  999
      |  |||||||||||||||||||  ||||| ||||| ||||| ||||||||
seq2  A--TTTACTTGGCATTGATCTG--TTTCACAGTGAAGGCAT-GCACACAC  989

seq1  CTCTTTGCTTATTTTTTCCAAGTACATTATTTCTAACCCTTCCCCAATAA  1049
      |   |||| |||||||| |||||||  ||| || ||||||  ||||||||
seq2  CCTCTTGC-TATTTTTT-CAAGTAC-CTATGTCCAACCCT--CCCAATAA  1034

seq1  GGATTTGCACAAGTGCTCTCATAACTACCTTAGACCTGCACAAAAATTTG  1099
      |   ||| || || |||| |   |||| |||||||   | | ||||||||
seq2  GAGATTG-AC-AGAGCTCCC--TACTA-CTTAGAC---CGCCAAAATTTG  1076

seq1  CTCAGCTGTAGAATA  1114
      ||||||||  |||||
seq2  CTCAGCTG-GGAATA  1090