BAC Information

Click to search

BAC

Clone NameB6Ng01-131F11
Chromosome16 (Build37)
Map Location 24,266,556 - 24,412,128
singlet/doubletdoublet
Overlap geneLOC666580, LOC100043564, 1110054M08Rik, Lpp
Upstream geneSt6gal1, Rtp1, Masp1, LOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009
Downstream geneA730098P11Rik, 5430420C16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131F11.bB6Ng01-131F11.g
ACCDH932422DH932423
length1,1741,112
definitionDH932422|Mus musculus domesticus DNA, BAC clone: B6Ng01-131F11, 5' end.DH932423|Mus musculus domesticus DNA, BAC clone: B6Ng01-131F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,410,946 - 24,412,128)(24,266,556 - 24,267,671)
sequence
gaattcctttattcagccaacagtgtgagacacagttttgcgattctcat
tctgtggatataagaacagagacctaaagagacaaagtagcaacctgaga
cctttgcaaagagccagatgcaaatctaggcggattaattcaggaaaccc
ctgctcctccacactgcatatttagaccaatgttttccaaatatttccag
agtttccaaatggctggcctatctagatctaacaaaaccaacaacaacaa
aatcatcacaaaaactgaaatgtgactactgcttcctaaggtaaattctg
aacatctcgactggagaaccagcctacctagatctaacaaaaccaacaac
aaaatcatcacaagaactgaaatgtgactaccgcttcctaaggtaaattc
tgaacatctcgactggaggaccagaccttacggcattatgaatggccttt
cacacctaagcacagccctgcacctggtctgaaccctgactttcctgaca
cattgttctagaaaccttgtatttgagttcacagtatgacctccagcctg
tcaccggatggtactgcattcctcaagtgtcagctctagaagagggtgaa
atctggtttgatcttaccaggtttgcaatgctaactatttaagagccata
ggggcacgcagagtacgcatagtgcatgccttaatcccagcactcaaaag
aggcaaatgtgaggagatcatggatttggaggccagccttgtctatgaag
tcagttacagaacagtcatggctacgtagaaacccaggtgggagagggga
gcagccataggacactggagcacctaacaatatcttgataaatctgaaaa
agaaaaactttctccttacctccactatgagatacttaaggcacaagacc
agcctcactcactgaacaatggtgctcataaataatggttctgaggactg
ataatccctcagaaaagatcagtggctggccacatcctaaacctcctcca
gtctgccccaaaatgcagcaatttgtcttcacaagttcccaacagatatc
atccgcatagaggaagccggagtaaaggaacaaaaagactgaaaagtcag
cttgtgactaaaatgcaatataaagaaacaatctaaagccggagtgctca
ctgcagaagggatccagaaatgtc
gaattcattgaatgggattaaaccttgaaacaaataggcaataaaataat
aactaagttgggctttattaaaatttagaagcacatgtgctcttagaagc
acaagaaaatacgagtgaagaaagagtaaataaagaaggatgaagttgga
acagacaacctatggagtagcaggacagattttcaaagtacaagtctggt
atggtactgatatatagaaaatacttctaaaaacacaactcaacaatgga
caacccagacttgaagcaggcaaagcataagagtagacatttctccaaat
agaacacttaacaatttacagtcacatggagaaaggtttgctatcaatag
tcatccagaaaacaaacagaaatagtaatatacatgttgctaaagatgga
gagaaattggaaactggacactttcctggtgggaacagttagtctgggga
atggtttgacaagagtttgacagtgaactgttagatggagaatcagcatt
ttgttagctcgtttttcactgtgacaaatacttgtaagaagtgacttaaa
ggaggaaagatttattttggctcatgaattcagacatgcctgggtgcctt
ggaccaccttggaataggccctggtagaataaaacttctaatctcatggt
ggacagggatattattcaaaacaatgtctcatgttcacttcctctaacct
tctagaaaaccccaccttctaataatgtgtccacaacctcctaataatgc
catcaaggtataaacctgtgagcgtatttaatccatcatttagatcagtg
ccctcatcattacattatctctaaatgagagggtccatctttaatacact
atgcatgttccagaaagtttacttctagtatattccccaggaactgtgag
aacatatatgtagccggatgtgtggtgcacacctttaatccagcacttgg
agacagaggcaggcggatttctgagttcaaggcagcctggtctacaagta
agttccagggcagccagggccttacagagaaaccctgtcctcaaaccaaa
caaaccaaacaaaacaatacaaaaggtatatattatttacaggaaagaat
gtcactatgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_24410946_24412128
seq2: B6Ng01-131F11.b_49_1222 (reverse)

seq1  GACATTTCATGGATTCCACTCTGCAGTGAGGCACTCCGGCTTCTAGATTT  50
      |||||||| |||| |||  |||||||||| |||||||||||| |||| ||
seq2  GACATTTC-TGGA-TCCCTTCTGCAGTGA-GCACTCCGGCTT-TAGA-TT  45

seq1  GTTTCTTTATATTGCTTTTTAGTCACCAGCCCTGACTTTTCTGTCTTTTT  100
      ||||||||||||||| |||||||||| ||  |||||||||| ||||||||
seq2  GTTTCTTTATATTGCATTTTAGTCACAAG--CTGACTTTTCAGTCTTTTT  93

seq1  GTTCCTTT-CTCCGGCTT-CTCTATGCGGATGATATCTGTTTGGGAACCT  148
      |||||||| ||||||||| |||||||||||||||||||| ||||||| ||
seq2  GTTCCTTTACTCCGGCTTCCTCTATGCGGATGATATCTG-TTGGGAA-CT  141

seq1  TGTGAAGACAAATGGCTGCAATTTTGGGGCAGACTGGAGGAGGTTTAGGA  198
      ||||||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  TGTGAAGACAAATTGCTGC-ATTTTGGGGCAGACTGGAGGAGGTTTAGGA  190

seq1  TGTGGCCAGCCACTGATC-TTTCTGAGGGATTATCAGTTCTTCAGAACCA  247
      |||||||||||||||||| |||||||||||||||||| || |||||||||
seq2  TGTGGCCAGCCACTGATCTTTTCTGAGGGATTATCAG-TCCTCAGAACCA  239

seq1  TTATTTATGGAGCACCATTGTTCAGTGAGTGAGGCTGGTCTTGTGCCTTA  297
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAT-GAGCACCATTGTTCAGTGAGTGAGGCTGGTCTTGTGCCTTA  288

seq1  AGTATCTCATAGTGGAGGTAAGGAGAAAGTTTTTCTTTTTCAGATTTATC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTCATAGTGGAGGTAAGGAGAAAGTTTTTCTTTTTCAGATTTATC  338

seq1  AAGATATTGTTAGGTGCTCCAGTGTCCTATGGCTGCTCCCCTCTCCCACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTGTTAGGTGCTCCAGTGTCCTATGGCTGCTCCCCTCTCCCACC  388

seq1  TGGGTTTCTACGTAGCCATGACTGTTCTGTAACTGACTTCATAGACAAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTCTACGTAGCCATGACTGTTCTGTAACTGACTTCATAGACAAGG  438

seq1  CTGGCCTCCAAATCCATGATCTCCTCACATTTGCCTCTTTTGAGTGCTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCCAAATCCATGATCTCCTCACATTTGCCTCTTTTGAGTGCTGG  488

seq1  GATTAAGGCATGCACTATGCGTACTCTGCGTGCCCCTATGGCTCTTAAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGGCATGCACTATGCGTACTCTGCGTGCCCCTATGGCTCTTAAAT  538

seq1  AGTTAGCATTGCAAACCTGGTAAGATCAAACCAGATTTCACCCTCTTCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGCATTGCAAACCTGGTAAGATCAAACCAGATTTCACCCTCTTCTA  588

seq1  GAGCTGACACTTGAGGAATGCAGTACCATCCGGTGACAGGCTGGAGGTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGACACTTGAGGAATGCAGTACCATCCGGTGACAGGCTGGAGGTCA  638

seq1  TACTGTGAACTCAAATACAAGGTTTCTAGAACAATGTGTCAGGAAAGTCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGAACTCAAATACAAGGTTTCTAGAACAATGTGTCAGGAAAGTCA  688

seq1  GGGTTCAGACCAGGTGCAGGGCTGTGCTTAGGTGTGAAAGGCCATTCATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCAGACCAGGTGCAGGGCTGTGCTTAGGTGTGAAAGGCCATTCATA  738

seq1  ATGCCGTAAGGTCTGGTCCTCCAGTCGAGATGTTCAGAATTTACCTTAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCGTAAGGTCTGGTCCTCCAGTCGAGATGTTCAGAATTTACCTTAGG  788

seq1  AAGCGGTAGTCACATTTCAGTTCTTGTGATGATTTTGTTGTTGGTTTTGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGGTAGTCACATTTCAGTTCTTGTGATGATTTTGTTGTTGGTTTTGT  838

seq1  TAGATCTAGGTAGGCTGGTTCTCCAGTCGAGATGTTCAGAATTTACCTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTAGGTAGGCTGGTTCTCCAGTCGAGATGTTCAGAATTTACCTTA  888

seq1  GGAAGCAGTAGTCACATTTCAGTTTTTGTGATGATTTTGTTGTTGTTGGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGTAGTCACATTTCAGTTTTTGTGATGATTTTGTTGTTGTTGGT  938

seq1  TTTGTTAGATCTAGATAGGCCAGCCATTTGGAAACTCTGGAAATATTTGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGATCTAGATAGGCCAGCCATTTGGAAACTCTGGAAATATTTGG  988

seq1  AAAACATTGGTCTAAATATGCAGTGTGGAGGAGCAGGGGTTTCCTGAATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTGGTCTAAATATGCAGTGTGGAGGAGCAGGGGTTTCCTGAATT  1038

seq1  AATCCGCCTAGATTTGCATCTGGCTCTTTGCAAAGGTCTCAGGTTGCTAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGCCTAGATTTGCATCTGGCTCTTTGCAAAGGTCTCAGGTTGCTAC  1088

seq1  TTTGTCTCTTTAGGTCTCTGTTCTTATATCCACAGAATGAGAATCGCAAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCTTTAGGTCTCTGTTCTTATATCCACAGAATGAGAATCGCAAA  1138

seq1  ACTGTGTCTCACACTGTTGGCTGAATAAAGGAATTC  1183
      ||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCTCACACTGTTGGCTGAATAAAGGAATTC  1174

seq1: chr16_24266556_24267671
seq2: B6Ng01-131F11.g_69_1180

seq1  GAATTCATTGAATGGGATTAAACCTTGAAACAAATAGGCAATAAAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAATGGGATTAAACCTTGAAACAAATAGGCAATAAAATAAT  50

seq1  AACTAAGTTGGGCTTTATTAAAATTTAGAAGCACATGTGCTCTTAGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGTTGGGCTTTATTAAAATTTAGAAGCACATGTGCTCTTAGAAGC  100

seq1  ACAAGAAAATACGAGTGAAGAAAGAGTAAATAAAGAAGGATGAAGTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAATACGAGTGAAGAAAGAGTAAATAAAGAAGGATGAAGTTGGA  150

seq1  ACAGACAACCTATGGAGTAGCAGGACAGATTTTCAAAGTACAAGTCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAACCTATGGAGTAGCAGGACAGATTTTCAAAGTACAAGTCTGGT  200

seq1  ATGGTACTGATATATAGAAAATACTTCTAAAAACACAACTCAACAATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACTGATATATAGAAAATACTTCTAAAAACACAACTCAACAATGGA  250

seq1  CAACCCAGACTTGAAGCAGGCAAAGCATAAGAGTAGACATTTCTCCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCAGACTTGAAGCAGGCAAAGCATAAGAGTAGACATTTCTCCAAAT  300

seq1  AGAACACTTAACAATTTACAGTCACATGGAGAAAGGTTTGCTATCAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACTTAACAATTTACAGTCACATGGAGAAAGGTTTGCTATCAATAG  350

seq1  TCATCCAGAAAACAAACAGAAATAGTAATATACATGTTGCTAAAGATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAGAAAACAAACAGAAATAGTAATATACATGTTGCTAAAGATGGA  400

seq1  GAGAAATTGGAAACTGGACACTTTCCTGGTGGGAACAGTTAGTCTGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATTGGAAACTGGACACTTTCCTGGTGGGAACAGTTAGTCTGGGGA  450

seq1  ATGGTTTGACAAGAGTTTGACAGTGAACTGTTAGATGGAGAATCAGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTGACAAGAGTTTGACAGTGAACTGTTAGATGGAGAATCAGCATT  500

seq1  TTGTTAGCTCGTTTTTCACTGTGACAAATACTTGTAAGAAGTGACTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGCTCGTTTTTCACTGTGACAAATACTTGTAAGAAGTGACTTAAA  550

seq1  GGAGGAAAGATTTATTTTGGCTCATGAATTCAGACATGCCTGGGTGCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAAGATTTATTTTGGCTCATGAATTCAGACATGCCTGGGTGCCTT  600

seq1  GGACCACCTTGGAATAGGCCCTGGTAGAATAAAACTTCTAATCTCATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACCTTGGAATAGGCCCTGGTAGAATAAAACTTCTAATCTCATGGT  650

seq1  GGACAGGGATATTATTCAAAACAATGTCTCATGTTCACTTCCTCTAACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGGATATTATTCAAAACAATGTCTCATGTTCACTTCCTCTAACCT  700

seq1  TCTAGAAAACCCCACCTTCTAATAATGTGTCCACAACCTCCTAATAATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAAACCCCACCTTCTAATAATGTGTCCACAACCTCCTAATAATGC  750

seq1  CATCAAGGTATAAACCTGTGAGCGTA-TTAATCCATCATTTAGATCAGTG  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATCAAGGTATAAACCTGTGAGCGTATTTAATCCATCATTTAGATCAGTG  800

seq1  CCCTCATCATTACATTATCTCTAAATGAGAGGGTCCATC-TTAATACACT  848
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCTCATCATTACATTATCTCTAAATGAGAGGGTCCATCTTTAATACACT  850

seq1  ATGCATGTTCCAGAAAGTTTACTTCTAGTATATTCCCCAGGAACTGTGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTTCCAGAAAGTTTACTTCTAGTATATTCCCCAGGAACTGTGAG  900

seq1  AACATATATGTAGCCGGATGTGGTGGTGCACACCTTTAATCCCAGCACTT  948
      ||||||||||||||||||||| |||||||||||||||||| |||||||||
seq2  AACATATATGTAGCCGGATGT-GTGGTGCACACCTTTAAT-CCAGCACTT  948

seq1  GGGAGACAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACA  998
       |||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  -GGAGACAGAGGCAGGCGGATTTCTGAGTTCAAGG-CAGCCTGGTCTAC-  995

seq1  AAGTAAGTTCCAGGGCAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAA  1048
      |||||||||||||||||||||||||  ||||||||||||||||| |  ||
seq2  AAGTAAGTTCCAGGGCAGCCAGGGCCTTACAGAGAAACCCTGTC-CTCAA  1044

seq1  ACAAAACAAAACAAAACAAAACAAAACAAAAAGTATATATTATATACA-G  1097
      || |||| |||| ||||||||||| |||||| ||||||||||| |||| |
seq2  ACCAAAC-AAACCAAACAAAACAATACAAAAGGTATATATTATTTACAGG  1093

seq1  AAAGAATGTACATATGCTT  1116
      |||||||||   |||||||
seq2  AAAGAATGTCACTATGCTT  1112