BAC Information

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BAC

Clone NameB6Ng01-131I01
Chromosome16 (Build37)
Map Location 26,613,844 - 26,614,904
singlet/doubletsinglet
Overlap geneIl1rap
Upstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057
Downstream geneGm606, Ostn, Uts2d, Ccdc50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131I01.bB6Ng01-131I01.g
ACCDH932544DH932545
length1,1711,062
definitionDH932544|Mus musculus domesticus DNA, BAC clone: B6Ng01-131I01, 5' end.DH932545|Mus musculus domesticus DNA, BAC clone: B6Ng01-131I01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaacttaggtaacttgaatgatgagaagcaccttaagaaatgt
tcaacatcctcagtcatcaggaaaatgaaaatcaaaacaactccgagatt
ctacctcataccagtcacaatggctaagatcaaaaactcaggtaacagca
gatgttggcaaggatgtggaggaagaagaacattcctcctttgctgatgg
aattgaaagcaggtacaactactatggaaatcagtctggtagttctccag
aaaattggacatagtactacctgaggactcagttataccactccaaggca
ttcacctaagaagatgccccaacatgttataaggacacataccccactat
gttcatagcagccatatttaaaatagccaggagctggaaacaacccagat
gtttctcaacagaggactggatacagaaaatgtggtacatttacacaatg
gactactattcagctattaaaaataacttaatgaaattagcaggtaaatg
gatggaacttgaaagtatcatcttaagtgaggcaactcacaaaagaacac
acacagtatgcactcactgataagtagagattagcatatacagtcaccaa
atcccacatgctattttctatacccgaaagtgcttgctgacaggatcctg
atagggttgtcttttcagagagtctgccagagcctgacaaattcagaggc
aaatgcagccaatcactgggctgtgtgcagggtctccaaaggagttagag
aaggaactgaaggagccgagggtgttttcagccccatggagggagcaaca
gtgtcaaccggccagaccctctggaacttccgaggactggaccaccaacc
aaatagtacacatggagggacacatggcagagaatggccttgttggcatt
gttgggaggaggggtccttgggcctgaggtgttcaatgcccaagtgtaag
gaatgtcagagcagaaaagagtgtgtgtgcgagcaccctcatagagcaag
agatggggaaggaaagaagtgtgtctaagggagatctgaagagaaaaaca
tttgatattaatagaaatttcgagagaagaagaagatgagtagtactaga
agtagagtagacgtagagaggagtagagagtcgagacgacatcagattaa
gctggttagggaaagccaact
gaattcccactttgagaaacaaaaacctgaacaaattcaaccagagtaga
actaccttcaagtgctttgggaagtgccaacacctactctgagattttag
aaagaggcccatttctttctggaaaatgaagagggaaaggctgtaaagga
ctggcgaaggcacgcacgagtctgtggacagatttctttcatttcagcat
caagtagggaaggcagctgtgtcttagggacccagcattgatctgtaaag
tatggcttggtatctcccttccttccctagttagaacctttgttgactgt
gtctgtgtttctactgagactcagaaaggcattctacatatgatgaagtt
catggacaaataagttcagttaatattttgttaaactaagctaacgatga
tatttacttaacagattgtctcaagacattaaaatgccattacaaatcgt
gaaccttcatgagagctgtggtgcattactcttgaaacacatttttaaaa
aaagttttgcttgacagtcagggtatttgctaaaggatgtcttgtagatg
tcattatgacattggtggcatttgtaatgaagttgaacattgggtttctt
gttattttgtttatgttttctttttttccattttgtttatgtctcttggc
tggcaagctgtgaggttcctgattatagcaacagtatatttcgtatttct
agctgctgtgacagaatatgaacaaatacaccctcaagaagggaaggttt
attttgactcacagatttggggcatggcctgtcttgatgggggaagcctg
aggtggttggcaatcttgaatttgtaatcatgaaaacaaaagtatataaa
ctctgctggtttctcctttttgttctgttcagggtccaggcccctggggc
cagtagaataacactaatcacatttagggtaggtcttctcccaaaattcc
agtctcaaaaccctgttacaaacatgtcaagaggcttgtctctgggtgaa
gctagaacttgacaagttgataagcaacattaccatcactgtgtgtatcc
tctgttaaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_26613844_26614904
seq2: B6Ng01-131I01.g_67_1128

seq1  GAATTCCCACTTTGAGAAACAAAAACCTGAACAAATTCAACCAGAGTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACTTTGAGAAACAAAAACCTGAACAAATTCAACCAGAGTAGA  50

seq1  ACTACCTTCAAGTGCTTTGGGAAGTGCCAACACCTACTCTGAGATTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTTCAAGTGCTTTGGGAAGTGCCAACACCTACTCTGAGATTTTAG  100

seq1  AAAGAGGCCCATTTCTTTCTGGAAAATGAAGAGGGAAAGGCTGTAAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGCCCATTTCTTTCTGGAAAATGAAGAGGGAAAGGCTGTAAAGGA  150

seq1  CTGGCGAAGGCACGCACGAGTCTGTGGACAGATTTCTTTCATTTCAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGAAGGCACGCACGAGTCTGTGGACAGATTTCTTTCATTTCAGCAT  200

seq1  CAAGTAGGGAAGGCAGCTGTGTCTTAGGGACCCAGCATTGATCTGTAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGGGAAGGCAGCTGTGTCTTAGGGACCCAGCATTGATCTGTAAAG  250

seq1  TATGGCTTGGTATCTCCCTTCCTTCCCTAGTTAGAACCTTTGTTGACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTTGGTATCTCCCTTCCTTCCCTAGTTAGAACCTTTGTTGACTGT  300

seq1  GTCTGTGTTTCTACTGAGACTCAGAAAGGCATTCTACATATGATGAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTTTCTACTGAGACTCAGAAAGGCATTCTACATATGATGAAGTT  350

seq1  CATGGACAAATAAGTTCAGTTAATATTTTGTTAAACTAAGCTAACGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACAAATAAGTTCAGTTAATATTTTGTTAAACTAAGCTAACGATGA  400

seq1  TATTTACTTAACAGATTGTCTCAAGACATTAAAATGCCATTACAAATCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTTAACAGATTGTCTCAAGACATTAAAATGCCATTACAAATCGT  450

seq1  GAACCTTCATGAGAGCTGTGGTGCATTACTCTTGAAACACATTTTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTCATGAGAGCTGTGGTGCATTACTCTTGAAACACATTTTTAAAA  500

seq1  AAAGTTTTGCTTGACAGTCAGGGTATTTGCTAAAGGATGTCTTGTAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTGCTTGACAGTCAGGGTATTTGCTAAAGGATGTCTTGTAGATG  550

seq1  TCATTATGACATTGGTGGCATTTGTAATGAAGTTGAACATTGGGTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATGACATTGGTGGCATTTGTAATGAAGTTGAACATTGGGTTTCTT  600

seq1  GTTATTTTGTTTATGTTTTCTTTTTTTCCATTTTGTTTATGTCTCTTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTGTTTATGTTTTCTTTTTTTCCATTTTGTTTATGTCTCTTGGC  650

seq1  TGGCAAGCTGTGAGGTTCCTGATTATAGCAACAGTATATTTCGTATTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGCTGTGAGGTTCCTGATTATAGCAACAGTATATTTCGTATTTCT  700

seq1  AGCTGCTGTGACAGAATATGAACAAATACACCCTCAAGAAGGGAAGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGTGACAGAATATGAACAAATACACCCTCAAGAAGGGAAGGTTT  750

seq1  ATTTTGACTCACAGATTTGGGGCATGGCCTGTCTTGATGGGGGAAGCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGACTCACAGATTTGGGGCATGGCCTGTCTTGATGGGGGAAGCCTG  800

seq1  AGGTGGTTGGCAATCTTGAATTTGTAATCATGAAAACAAAAGTATATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTTGGCAATCTTGAATTTGTAATCATGAAAACAAAAGTATATAAA  850

seq1  CTCTGCTGGTTTCTCCTTTTTGTTCTGTTCAGGGTCCAGGCCCCT-GGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTCTGCTGGTTTCTCCTTTTTGTTCTGTTCAGGGTCCAGGCCCCTGGGGC  900

seq1  CAGTAGAATAACACTAATCACATTTAGGGTAGGTCTTCTCACAAAAATCC  949
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  CAGTAGAATAACACTAATCACATTTAGGGTAGGTCTTCTCCCAAAATTCC  950

seq1  AGTCTCAAAACCCTGTTACAAACATGTCAAGAGGCTTGTCTCCTGGGTGA  999
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGTCTCAAAACCCTGTTACAAACATGTCAAGAGGCTTGTCT-CTGGGTGA  999

seq1  AGCTAGAACTTGACAAGTTGATAAGCAACATTAACCATCACTGTGTGTAT  1049
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGCTAGAACTTGACAAGTTGATAAGCAACATT-ACCATCACTGTGTGTAT  1048

seq1  -CTCTG-TAAAGTT  1061
       ||||| |||||||
seq2  CCTCTGTTAAAGTT  1062