BAC Information

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BAC

Clone NameB6Ng01-132E05
Chromosome16 (Build37)
Map Location 92,989,135 - 93,150,552
singlet/doubletdoublet
Overlap genenone
Upstream geneMrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
Downstream geneLOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14, Sim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132E05.bB6Ng01-132E05.g
ACCDH933110DH933111
length1,1031,167
definitionDH933110|Mus musculus domesticus DNA, BAC clone: B6Ng01-132E05, 5' end.DH933111|Mus musculus domesticus DNA, BAC clone: B6Ng01-132E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,149,439 - 93,150,552)(92,989,135 - 92,990,315)
sequence
gaattcagagatagtgtctcctggggtgctctgaagtgaagctgtgttct
ggtcactccagagcctctccaaatggccgtgatctccagagctttctctg
agaggaagtcaggtagtgtgtggaccccctgcaattctgtgggtacttgg
ggctattttaagtttgtgccactgacaccgcgtttttattttgcctaaac
cgagtataacatcacttctccctcattatcaacacatgggcaacactttc
atcagagcaacgacagtgtgtgtgtgtgtttattttctaagacagaatat
tcttcctgtaatttatttaacttaccagatttcgttttgcaagcctggga
ggcagcatgttggcaccaaagccaggacagttcacagtttatttccataa
tgaccatgcaaagcttcaaatgtatattgagttcggatgggtccctctgc
ttttaaggaagaaagaaaaatgtattttgatgagacactgccgttttgag
tacagttttagctttgtaaattgcatttaagacagtgttatttacaacat
aaggaagcttaatatattttccaaaattgttggtgatttgacacttgtat
ccttgaagtctccggtaatttcattattcagagaatagaacatatatagc
tgtgggtaatgattcttgttagaagttttctggtggccttctgaaagaat
taaaatgacttttaaatttgatttcttgcatactttcagagtccaaaggt
cacaattctctattagtctaccaagggcgacatctaaggtattcctgcaa
gcccctttaaggcctccctactcaatttaagagtttggatgtcactacat
tgagttcatgaaaatatcactattgtgactcataacttactgcagtttca
attttttttcaaaacctgcctgacagatgcacagggtgcttgaagagctt
attctgtggcttctgagcttgcaaacgggatctggactccacagaggcaa
agcttcttcgcttttggagccccccgatgtcatctgaggcctggagttcc
tggggtgttttcagctccatgaagtgtgtgaggtacgccaggttgagggt
gtg
gaattcttatggcatacctctgcttttcaaaattgatcctgggcaggtga
gacagctcagggcctacaggggcctgctgtcaaggctgatgacctgagct
tggtccccttgaccaacatggttgaaggagagtgtgaacttcaagaagtt
gtccattgtagcatggcatgtgttcttacatctgtatgtgtgcaagcaca
atcaatcaatgcagtaaagaagtggatcctaaggataagagcaggtactc
ccacaatgagctttacagaaatacatattagaactctcaaggacactggg
aaattgaagataaattttaggtctgctagttaaggaataattacatttag
cataactgaatatcaaggtatacagaggatcattagcaagctgtggcatc
catgtgtacttgttaacagagaacagcaacctgaacacttcaatccataa
agtggactgctattctgcatgagcccattcatataaaattagacacaaag
aaagcagcatccagacggatgccttctgactcttgagcgccactgcgttt
cagggtatacttcacccagtccgtttaccaaatgtgtgggctgggatttt
attctgtactgttatttttttgcaattggccaaagaagtaaagttacttt
gattttgaggaaaataagattctagttaccaatttggggcaattaaaata
tgaaataaaataaaataaaataaaaaataagaatcagatcccaccttccc
aggtttggtgtagtgtataacttggtacaaccggtgactctgactgcatt
gccatgctattgacacaaaggttttaactgtctcaatctagttggttttc
tttcccgttttcatgtttttcttttcttttcatctttccttccttctttc
cttctccttccttcctcctcctccccctctttcctttgttttgagatttc
cattcttcttcactccgttttggactcacacagcgtgaccattataggaa
tcgttcaccagaatctggtttctcaggtttaggggagtcacctacagact
gcatttgggaacacaacaagatgaatcaggagaacattccctatgaactc
ctaacccatcttgcttcactgttccctcccaacgttggctgtgtcgtctt
gagtcagccttatgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_93149439_93150552
seq2: B6Ng01-132E05.b_45_1147 (reverse)

seq1  CACACCCTCAAACCTGACGTCACCTCACACAACTCTCATGGGAGACCTGA  50
      ||||||||| |||||| ||| ||||||||| ||| |||||   || ||||
seq2  CACACCCTC-AACCTGGCGT-ACCTCACAC-ACT-TCATG---GAGCTGA  43

seq1  AAACAACCCCAGGGACT-CAGGCCTCAGATGACATCGGGGGGGCTCCAAA  99
      |||| |||||||| ||| |||||||||||||||||| |||||||||||||
seq2  AAAC-ACCCCAGGAACTCCAGGCCTCAGATGACATC-GGGGGGCTCCAAA  91

seq1  AGCCGGAAG-AGCTTTGCCTCTGTGGAGTCCAGATCCCGTTTTGCAAGCT  148
      |||  |||| ||||||||||||||||||||||||||||| ||||||||| 
seq2  AGC--GAAGAAGCTTTGCCTCTGTGGAGTCCAGATCCCG-TTTGCAAGC-  137

seq1  TCAG-AGCCACAGAAT-AGCTCTTCCAGCACCCTGTGCATCTGTCAGGCA  196
      |||| ||||||||||| |||||||| ||||||||||||||||||||||||
seq2  TCAGAAGCCACAGAATAAGCTCTTCAAGCACCCTGTGCATCTGTCAGGCA  187

seq1  GGTTTTGAAAAAAAAAATTGAAACTGCAGTAAGTTATGAGTCACAATAGT  246
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTG--AAAAAAAATTGAAACTGCAGTAAGTTATGAGTCACAATAGT  235

seq1  GATATTTTACATGAACTCAATGTAGTGACATCCAAACTCTTAAATTGAGT  296
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTT-CATGAACTCAATGTAGTGACATCCAAACTCTTAAATTGAGT  284

seq1  AGGGAGGCCTTAAAGGGGCTTGCAGGAATACCTTAGATGTCGCCCTTGGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGCCTTAAAGGGGCTTGCAGGAATACCTTAGATGTCGCCCTTGGT  334

seq1  AGACTAATAGAGAATTGTGACCTTTGGACTCTGAAAGTATGCAAGAAATC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAATAGAGAATTGTGACCTTTGGACTCTGAAAGTATGCAAGAAATC  384

seq1  AAATTTAAAAGTCATTTTAATTCTTTCAGAAGGCCACCAG-AAACTTCTA  445
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAATTTAAAAGTCATTTTAATTCTTTCAGAAGGCCACCAGAAAACTTCTA  434

seq1  ACAAGAATCATTACCCACAGCTATATATGTTCTATTCTCTGAATAATGAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAATCATTACCCACAGCTATATATGTTCTATTCTCTGAATAATGAA  484

seq1  ATTACCGGAGACTTCAAGGATACAAGTGTCAAATCACCAACAATTTTGGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCGGAGACTTCAAGGATACAAGTGTCAAATCACCAACAATTTTGGA  534

seq1  AAATATATTAAGCTTCCTTATGTTGTAAATAACACTGTCTTAAATGCAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTAAGCTTCCTTATGTTGTAAATAACACTGTCTTAAATGCAAT  584

seq1  TTACAAAGCTAAAACTGTACTCAAAACGGCAGTGTCTCATCAAAATACAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGCTAAAACTGTACTCAAAACGGCAGTGTCTCATCAAAATACAT  634

seq1  TTTTCTTTCTTCCTTAAAAGCAGAGGGACCCATCCGAACTCAATATACAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCTTCCTTAAAAGCAGAGGGACCCATCCGAACTCAATATACAT  684

seq1  TTGAAGCTTTGCATGGTCATTATGGAAATAAACTGTGAACTGTCCTGGCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCTTTGCATGGTCATTATGGAAATAAACTGTGAACTGTCCTGGCT  734

seq1  TTGGTGCCAACATGCTGCCTCCCAGGCTTGCAAAACGAAATCTGGTAAGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCCAACATGCTGCCTCCCAGGCTTGCAAAACGAAATCTGGTAAGT  784

seq1  TAAATAAATTACAGGAAGAATATTCTGTCTTAGAAAATAAACACACACAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATTACAGGAAGAATATTCTGTCTTAGAAAATAAACACACACAC  834

seq1  ACACTGTCGTTGCTCTGATGAAAGTGTTGCCCATGTGTTGATAATGAGGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTCGTTGCTCTGATGAAAGTGTTGCCCATGTGTTGATAATGAGGG  884

seq1  AGAAGTGATGTTATACTCGGTTTAGGCAAAATAAAAACGCGGTGTCAGTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGATGTTATACTCGGTTTAGGCAAAATAAAAACGCGGTGTCAGTG  934

seq1  GCACAAACTTAAAATAGCCCCAAGTACCCACAGAATTGCAGGGGGTCCAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAACTTAAAATAGCCCCAAGTACCCACAGAATTGCAGGGGGTCCAC  984

seq1  ACACTACCTGACTTCCTCTCAGAGAAAGCTCTGGAGATCACGGCCATTTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACCTGACTTCCTCTCAGAGAAAGCTCTGGAGATCACGGCCATTTG  1034

seq1  GAGAGGCTCTGGAGTGACCAGAACACAGCTTCACTTCAGAGCACCCCAGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCTCTGGAGTGACCAGAACACAGCTTCACTTCAGAGCACCCCAGG  1084

seq1  AGACACTATCTCTGAATTC  1114
      |||||||||||||||||||
seq2  AGACACTATCTCTGAATTC  1103

seq1: chr16_92989135_92990315
seq2: B6Ng01-132E05.g_66_1232

seq1  GAATTCTTATGGCATACCTCTGCTTTTCAAAATTGATCCTGGGCAGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGGCATACCTCTGCTTTTCAAAATTGATCCTGGGCAGGTGA  50

seq1  GACAGCTCAGGGCCTACAGGGGCCTGCTGTCAAGGCTGATGACCTGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTCAGGGCCTACAGGGGCCTGCTGTCAAGGCTGATGACCTGAGCT  100

seq1  TGGTCCCCTTGACCAACATGGTTGAAGGAGAGTGTGAACTTCAAGAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCCTTGACCAACATGGTTGAAGGAGAGTGTGAACTTCAAGAAGTT  150

seq1  GTCCATTGTAGCATGGCATGTGTTCTTACATCTGTATGTGTGCAAGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTGTAGCATGGCATGTGTTCTTACATCTGTATGTGTGCAAGCACA  200

seq1  ATCAATCAATGCAGTAAAGAAGTGGATCCTAAGGATAAGAGCAGGTACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCAATGCAGTAAAGAAGTGGATCCTAAGGATAAGAGCAGGTACTC  250

seq1  CCACAATGAGCTTTACAGAAATACATATTAGAACTCTCAAGGACACTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATGAGCTTTACAGAAATACATATTAGAACTCTCAAGGACACTGGG  300

seq1  AAATTGAAGATAAATTTTAGGTCTGCTAGTTAAGGAATAATTACATTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAGATAAATTTTAGGTCTGCTAGTTAAGGAATAATTACATTTAG  350

seq1  CATAACTGAATATCAAGGTATACAGAGGATCATTAGCAAGCTGTGGCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTGAATATCAAGGTATACAGAGGATCATTAGCAAGCTGTGGCATC  400

seq1  CATGTGTACTTGTTAACAGAGAACAGCAACCTGAACACTTCAATCCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTACTTGTTAACAGAGAACAGCAACCTGAACACTTCAATCCATAA  450

seq1  AGTGGACTGCTATTCTGCATGAGCCCATTCATATAAAATTAGACACAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACTGCTATTCTGCATGAGCCCATTCATATAAAATTAGACACAAAG  500

seq1  AAAGCAGCATCCAGACGGATGCCTTCTGACTCTTGAGCGCCACTGCGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCATCCAGACGGATGCCTTCTGACTCTTGAGCGCCACTGCGTTT  550

seq1  CAGGGTATACTTCACCCAGTCCGTTTACCAAATGTGTGGGCTGGGATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTATACTTCACCCAGTCCGTTTACCAAATGTGTGGGCTGGGATTTT  600

seq1  ATTCTGTACTGTTATTTTTTTGCAATTGGCCAAAGAAGTAAAGTTACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTACTGTTATTTTTTTGCAATTGGCCAAAGAAGTAAAGTTACTTT  650

seq1  GATTTTGAGGAAAATAAGATTCTAGTTACCAATTTGGGGCAATTAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGAGGAAAATAAGATTCTAGTTACCAATTTGGGGCAATTAAAATA  700

seq1  TGAAATAAAATAAAATAAAATAAAAAATAAGAATCAGATCCCACCTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAAATAAAATAAAATAAAAAATAAGAATCAGATCCCACCTTCCC  750

seq1  AGGTTTGGTGTAGGTGTATAACTTGGTACAACCGGTGACTCTGACTGCAT  800
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGGTGTA-GTGTATAACTTGGTACAACCGGTGACTCTGACTGCAT  799

seq1  TGCCATGCTATTGACACAAAGGTTTTAACTGTCTCAATCTAGTTGGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGCTATTGACACAAAGGTTTTAACTGTCTCAATCTAGTTGGTTTT  849

seq1  CTTTCCCGTTTTCATGTTTTTCTTTTCTTTTCATCTTTCCTTCCTTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCGTTTTCATGTTTTTCTTTTCTTTTCATCTTTCCTTCCTTCTTT  899

seq1  CCTTCTTCCTTCCTTCCTCCTCCTCCCCCCTCTTTCCTTTGTTTTTGAGA  950
      ||||| |||||||||||||||||| |||||||||||||||| ||||||||
seq2  CCTTC-TCCTTCCTTCCTCCTCCT-CCCCCTCTTTCCTTTG-TTTTGAGA  946

seq1  TTTCCATTCTTCTTCACTCCGTTTTTGGACTCACACAGCGTGACCATTAT  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTCCATTCTTCTTCACTCCG-TTTTGGACTCACACAGCGTGACCATTAT  995

seq1  AGGAATCGTTCACCAGATCTTGGTTTCTCAGGGTGTAAGTGAGTCACCTA  1050
      |||||||||||||||||   |||||||||| ||| || | ||||||||||
seq2  AGGAATCGTTCACCAGAATCTGGTTTCTCA-GGTTTAGGGGAGTCACCTA  1044

seq1  CAGACTGGCATTTGGGACACACAACAAGATTGGTATCAGGAGAACATTTC  1100
      |||||| |||||||||| ||||||||||||  | |||||||||||| |||
seq2  CAGACT-GCATTTGGGA-ACACAACAAGAT--GAATCAGGAGAACA-TTC  1089

seq1  CCTATG-ACTCCTAAACACACTCTTGCTTCACTG-TCCCTCCCAGCGTTT  1148
      |||||| |||||| ||| || ||||||||||||| ||||||||| |||| 
seq2  CCTATGAACTCCT-AACCCA-TCTTGCTTCACTGTTCCCTCCCAACGTTG  1137

seq1  GCTGGGTTCGTCTGAGGGTCAGGCCTTATGTTA  1181
      |||| | ||||||  | |||| |||||||||||
seq2  GCTGTG-TCGTCT-TGAGTCA-GCCTTATGTTA  1167