BAC Information

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BAC

Clone NameB6Ng01-132E08
Chromosome16 (Build37)
Map Location 24,232,056 - 24,358,407
singlet/doubletdoublet
Overlap genenone
Upstream geneBC106179, St6gal1, Rtp1, Masp1, LOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009
Downstream geneLOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik, 5430420C16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132E08.bB6Ng01-132E08.g
ACCDH933116DH933117
length1,1571,026
definitionDH933116|Mus musculus domesticus DNA, BAC clone: B6Ng01-132E08, 5' end.DH933117|Mus musculus domesticus DNA, BAC clone: B6Ng01-132E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,232,056 - 24,233,226)(24,357,374 - 24,358,407)
sequence
gaattcctcactagacagcacattgctacctataagattaaacattttat
ttcccacctctaacaaggcttttgaattctttcaaggctcacaaagatct
acaagttgttagcattctcctcaccagttaaaggaaataatgaaaagaat
gtgcctgcccacaagacatgggccctggggagagtaagggatattcctga
agccacctgctcagccagtgaaagaaggatgagcaagcactggcttctct
acaacagaaccatttgcttggccaaaaatttcatctgagggccaagatgg
tgagccatgagtgataaacgctgtcactagggagagccatcttagcatgc
gtctagaatgaatctcgttcaacagcagcaaggctgtctcatgcctcagg
aagcttgccagctgggtggttcctttccgggtctatgtttgggtggtcac
cctctaaaaagaatattcgaattgctcctgctgcgttgacaaccttgccc
acttgtcacctctgtttctgagagtttctttccaattgctggtggcatct
gtgtacctcacacacctcagccgaggttgctcaattcttctgtcctcagg
agcagcgccatctgtccacttccagttcattctcagtagccagaggctaa
tgtgtacttctgggacattcgcagtagctgaagggtcaaagctgggtgac
aaagaatcaccagcattcaaccttaacttttatgttagtttattttatac
tttttactttcaggttacaggagttttgcctactgtctgtctctatgcac
tcatgtgcatgcatgatgcccaaagagttcagaagagagccagagagcca
ctgcaacctgagttacagacagttgtgagctaccgtatgggtgctgggaa
ttgaaattagagctttgggaatcataacagtgcttttaacctttgagcca
ctctgccactctcgggctcaaattttaaaacatatcaatttcatgagctt
taatgatctagctcagctttgaagaatgtcagagatcacacctttctcct
cctcctcccccacacactatttaaaatggaggattctaagcatgctcagc
tggaggtgaggtggggtgattaatccccacactcatactggcacattttg
gtccaag
gaattcatcatggccacttaaaggacagaagatggcacaactgtgtagga
tcgtacttgaggaaaaatgagttctcagacagaagactggcaaaaacaaa
aacaaaaacaaaaaaaaccttttatttacaaagagaaactgccattcatt
ctcaaaaataaatcacacaatatcatgtatgcaacaggagatataacaca
gaggacattggaattagaaattacctcccactcaggaatagtcatgggtg
aattactatcaaaattccttaggccttcctcataattcagtatctcggga
ctgtaattatctaatcttagcaagaccatatgcatcagaacctcagactt
cctgtgtataaaatctagatgtgttcaagacgtgatatctaagatcctat
ccagctatgaaatttggcccaaaacatttcaactcagtgttgaaatgtac
tctcacatcaactactgttgtatcataacagcagcagccacaatgccaaa
ccccactactactaagtaagaactgcaaagatgccagggaaactgttctc
aatactagccattaggcaatatagggatagcctcttttctttcctactga
aggcagagtcatagcagactgacatgtagttcagaaaattaccagagagc
ttgagaaatcagatctttaagaacaagcaaggtcaaaggctttaggattg
cccccccccccacccccttgcctcccacccatcccattggctccccagca
catttctgcactcagtttatcaaacaggtcccatctctgtgtgccttgca
ggcctggtctacatcctctggcttccactaaatgctacaaggctgataag
aagatggactcagagtcaattgggcaggcaggattttttttttttttttt
ttttttgcatggaagaagtcagttgcagtgaacaccccacccccagtggg
tagggcaactatcattacgattatggaagatctactttgctgtagaacct
atgttaaggtcgaaagcaatgcccga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_24232056_24233226
seq2: B6Ng01-132E08.b_48_1204

seq1  GAATTCCTCACTAGACAGCACATTGCTACCTATAAGATTAAACATTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACTAGACAGCACATTGCTACCTATAAGATTAAACATTTTAT  50

seq1  TTCCCACCTCTAACAAGGCTTTTGAATTCTTTCAAGGCTCACAAAGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACCTCTAACAAGGCTTTTGAATTCTTTCAAGGCTCACAAAGATCT  100

seq1  ACAAGTTGTTAGCATTCTCCTCACCAGTTAAAGGAAATAATGAAAAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTGTTAGCATTCTCCTCACCAGTTAAAGGAAATAATGAAAAGAAT  150

seq1  GTGCCTGCCCACAAGACATGGGCCCTGGGGAGAGTAAGGGATATTCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGCCCACAAGACATGGGCCCTGGGGAGAGTAAGGGATATTCCTGA  200

seq1  AGCCACCTGCTCAGCCAGTGAAAGAAGGATGAGCAAGCACTGGCTTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCTGCTCAGCCAGTGAAAGAAGGATGAGCAAGCACTGGCTTCTCT  250

seq1  ACAACAGAACCATTTGCTTGGCCAAAAATTTCATCTGAGGGCCAAGATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGAACCATTTGCTTGGCCAAAAATTTCATCTGAGGGCCAAGATGG  300

seq1  TGAGCCATGAGTGATAAACGCTGTCACTAGGGAGAGCCATCTTAGCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATGAGTGATAAACGCTGTCACTAGGGAGAGCCATCTTAGCATGC  350

seq1  GTCTAGAATGAATCTCGTTCAACAGCAGCAAGGCTGTCTCATGCCTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGAATGAATCTCGTTCAACAGCAGCAAGGCTGTCTCATGCCTCAGG  400

seq1  AAGCTTGCCAGCTGGGTGGTTCCTTTCCGGGTCTATGTTTGGGTGGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGCCAGCTGGGTGGTTCCTTTCCGGGTCTATGTTTGGGTGGTCAC  450

seq1  CCTCTAAAAAGAATATTCGAATTGCTCCTGCTGCGTTGACAACCTTGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAAAAGAATATTCGAATTGCTCCTGCTGCGTTGACAACCTTGCCC  500

seq1  ACTTGTCACCTCTGTTTCTGAGAGTTTCTTTCCAATTGCTGGTGGCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCACCTCTGTTTCTGAGAGTTTCTTTCCAATTGCTGGTGGCATCT  550

seq1  GTGTACCTCACACACCTCAGCCGAGGTTGCTCAATTCTTCTGTCCTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCTCACACACCTCAGCCGAGGTTGCTCAATTCTTCTGTCCTCAGG  600

seq1  AGCAGCGCCATCTGTCCACTTCCAGTTCATTCTCAGTAGCCAGAGGCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCGCCATCTGTCCACTTCCAGTTCATTCTCAGTAGCCAGAGGCTAA  650

seq1  TGTGTACTTCTGGGACATTCGCAGTAGCTGAAGGGTCAAAGCTGGGTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACTTCTGGGACATTCGCAGTAGCTGAAGGGTCAAAGCTGGGTGAC  700

seq1  AAAGAATCACCAGCATTCAACCTTAACTTTTATGTTAGTTTATTTTATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATCACCAGCATTCAACCTTAACTTTTATGTTAGTTTATTTTATAC  750

seq1  TTTTTACTTTCAGGTTACAGGAGTTTTGCCTACTGTCTGTCTCTATGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTTTCAGGTTACAGGAGTTTTGCCTACTGTCTGTCTCTATGCAC  800

seq1  TCATGTGCATGCATGATGCCCAAAGAGTTCAGAAGAGAGCCAGAGAGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGCATGCATGATGCCCAAAGAGTTCAGAAGAGAGCCAGAGAGCCA  850

seq1  CTGCAACCTGAGTTACAGACAGTTGTGAGCTACCGTATGGGTGCTGGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACCTGAGTTACAGACAGTTGTGAGCTACCGTATGGGTGCTGGGAA  900

seq1  TTGAAATTAGAGCTTTGGGAATCATAACAAGTGCTTTTAACCTTTGAGCC  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTGAAATTAGAGCTTTGGGAATCATAAC-AGTGCTTTTAACCTTTGAGCC  949

seq1  ACCTCTGCCACTCTCGGGCTCAAATTTTAAAACATAATCAATTTCATGAG  1000
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  A-CTCTGCCACTCTCGGGCTCAAATTTTAAAACAT-ATCAATTTCATGAG  997

seq1  CTTTAATGATCTAGGCTCAGGCTTTGAAGAATGTCAGAGATTCACACCTT  1050
      ||||||||||||| ||||| |||||||||||||||||||| |||||||||
seq2  CTTTAATGATCTA-GCTCA-GCTTTGAAGAATGTCAGAGA-TCACACCTT  1044

seq1  TCTCCCCCCTCCCTCCCCCCACACACTTATTTAAAAT-GAGGATTCTACC  1099
      ||| || |||||   ||||||||||| |||||||||| ||||||||||  
seq2  TCT-CCTCCTCC--TCCCCCACACAC-TATTTAAAATGGAGGATTCTA--  1088

seq1  AGCATGCTCAGCCTGA-GTGA-GTGTGGTGAATTAAATCCCCACACTCCA  1147
      ||||||||||||  || |||| ||| |||||  | |||||||||||| ||
seq2  AGCATGCTCAGCTGGAGGTGAGGTGGGGTGA--TTAATCCCCACACT-CA  1135

seq1  TAACTGGCACATTTTGGTCACAAG  1171
      | ||||||||||||||||| ||||
seq2  T-ACTGGCACATTTTGGTC-CAAG  1157

seq1: chr16_24357374_24358407
seq2: B6Ng01-132E08.g_67_1092 (reverse)

seq1  TCGGGCATTGGCTTTTCGACCTTAGCAATGGGTCTACAGCAAAAGTAGAT  50
      ||||||||||   ||||||||||| ||  || |||||||| |||||||||
seq2  TCGGGCATTG--CTTTCGACCTTAACATAGGTTCTACAGC-AAAGTAGAT  47

seq1  C-TACATAATCGTAATGGATAGTTTGCCCTACCACCTGGGGGTGTGGTGT  99
      | | |||||||||||| ||||| ||||||||||  ||||||||| |||||
seq2  CTTCCATAATCGTAAT-GATAG-TTGCCCTACCCACTGGGGGTGGGGTGT  95

seq1  CACCTGCAACTGACATCCT-CATGCAAAAAAAAAAAAAAAAAAAAAAAAA  148
         ||||||||||| || | |||||    |||||||||||||||||||||
seq2  TCACTGCAACTGACTTCTTCCATGC----AAAAAAAAAAAAAAAAAAAAA  141

seq1  AATCCTGCCTGCCCAATTGACTCTGAGTCCATCTTCTTATCAGCCTTGTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGCCTGCCCAATTGACTCTGAGTCCATCTTCTTATCAGCCTTGTA  191

seq1  GCATTTAGTGGAAGCCAGAGGATGTAGAACCAGGCCTGCAAGGCACACAG  248
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCATTTAGTGGAAGCCAGAGGATGTAG-ACCAGGCCTGCAAGGCACACAG  240

seq1  AGATGGGACCTGTTTGATAAACTGAGTGCAGAAATGTGCTGGGGAGCCAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGACCTGTTTGATAAACTGAGTGCAGAAATGTGCTGGGGAGCCAA  290

seq1  TGGGATGGGTGGGAGGCAAGGGGGTGGGGGGGGGGGCAATCCTAAAGCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGGGTGGGAGGCAAGGGGGTGGGGGGGGGGGCAATCCTAAAGCCT  340

seq1  TTGACCTTGCTTGTTCTTAAAGATCTGATTTCTCAAGCTCTCTGGTAATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTTGCTTGTTCTTAAAGATCTGATTTCTCAAGCTCTCTGGTAATT  390

seq1  TTCTGAACTACATGTCAGTCTGCTATGACTCTGCCTTCAGTAGGAAAGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAACTACATGTCAGTCTGCTATGACTCTGCCTTCAGTAGGAAAGAA  440

seq1  AAGAGGCTATCCCTATATTGCCTAATGGCTAGTATTGAGAACAGTTTCCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCTATCCCTATATTGCCTAATGGCTAGTATTGAGAACAGTTTCCC  490

seq1  TGGCATCTTTGCAGTTCTTACTTAGTAGTAGTGGGGTTTGGCATTGTGGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTTTGCAGTTCTTACTTAGTAGTAGTGGGGTTTGGCATTGTGGC  540

seq1  TGCTGCTGTTATGATACAACAGTAGTTGATGTGAGAGTACATTTCAACAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGTTATGATACAACAGTAGTTGATGTGAGAGTACATTTCAACAC  590

seq1  TGAGTTGAAATGTTTTGGGCCAAATTTCATAGCTGGATAGGATCTTAGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGAAATGTTTTGGGCCAAATTTCATAGCTGGATAGGATCTTAGAT  640

seq1  ATCACGTCTTGAACACATCTAGATTTTATACACAGGAAGTCTGAGGTTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGTCTTGAACACATCTAGATTTTATACACAGGAAGTCTGAGGTTCT  690

seq1  GATGCATATGGTCTTGCTAAGATTAGATAATTACAGTCCCGAGATACTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATATGGTCTTGCTAAGATTAGATAATTACAGTCCCGAGATACTGA  740

seq1  ATTATGAGGAAGGCCTAAGGAATTTTGATAGTAATTCACCCATGACTATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAGGAAGGCCTAAGGAATTTTGATAGTAATTCACCCATGACTATT  790

seq1  CCTGAGTGGGAGGTAATTTCTAATTCCAATGTCCTCTGTGTTATATCTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTGGGAGGTAATTTCTAATTCCAATGTCCTCTGTGTTATATCTCC  840

seq1  TGTTGCATACATGATATTGTGTGATTTATTTTTGAGAATGAATGGCAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCATACATGATATTGTGTGATTTATTTTTGAGAATGAATGGCAGTT  890

seq1  TCTCTTTGTAAATAAAAGGTTTTTTTTGTTTTTGTTTTTGTTTTTGCCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTGTAAATAAAAGGTTTTTTTTGTTTTTGTTTTTGTTTTTGCCAG  940

seq1  TCTTCTGTCTGAGAACTCATTTTTCCTCAAGTACGATCCTACACAGTTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTCTGAGAACTCATTTTTCCTCAAGTACGATCCTACACAGTTGT  990

seq1  GCCATCTTCTGTCCTTTAAGTGGCCATGATGAATTC  1034
      ||||||||||||||||||||||||||||||||||||
seq2  GCCATCTTCTGTCCTTTAAGTGGCCATGATGAATTC  1026