BAC Information

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BAC

Clone NameB6Ng01-133I01
Chromosome16 (Build37)
Map Location 65,085,144 - 65,225,309
singlet/doubletdoublet
Overlap geneHtr1f, LOC672931
Upstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, LOC668247
Downstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133I01.bB6Ng01-133I01.g
ACCDH934032DH934033
length1,0701,086
definitionDH934032|Mus musculus domesticus DNA, BAC clone: B6Ng01-133I01, 5' end.DH934033|Mus musculus domesticus DNA, BAC clone: B6Ng01-133I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,224,242 - 65,225,309)(65,085,144 - 65,086,235)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttcccagtggaacttaaagaatgctttcctaaa
attacctgtgaatagcatttgttgtaagatgagttgtgcccccacatctt
gaacactgattctctgatccaactgatcaaagtctgaaattattataatc
aattaagtaaaatgaggaaatatttgtcttaatgttttttatacaaaaga
gaaaaagacatagagacacagaaatttaatacaaataaagagaggccatt
tcaggccttgaggtgcctgaatttccctcggcagtattcagaaataactt
gtggtgtgaaagttcagactctagaactaatgaaataatgaatcctggct
tttatatcatctggtaagtggtaaattggttatgtcagcctaacaaatga
ctatagctactgtgatacatcagtgatgaagagcaaaatataagttaaat
cctaagaggatgttgccaaaaccacactaaaaggaaaatggttgtataaa
gtgtgcttatatgagtatatggatttttttaattaatgcatttacttcag
acattatggaaaaacaaaatttcaccatgttaaagaaaaccataaatgtc
tgaaaataagcatgaaagaaaagaatcaaagagagaaatattttaatgca
aaggtggtgttaaaataaaatatctgtgtattgggctgggggaattaatc
agtcagaataatgcctgtctacaaacatgaggatctgagttcaaacttcc
agaagccaaacaagtacactgtatccccagctttcagggcagtctacggt
gaatggcagtggatgcctggagttcattgactaagcagcttagctgaatt
gatgaactcgaaatccagtgagaaatcctgtctcaaaaaacagtttgaat
attgattgaaaaagacactttattttttgctttggcatccatatgcttat
atacatataatgcatttacaccaatcactcccatatcatgtaacatacat
cctctaaaacaacacacaca
gaattccaaatgcctgttatcaacacctagtagataactggctataaatt
gaataaatagatccaatggaaaataggaaagtacaattgcagaaagtgac
cttaatgtgcatggtgcatgtataactcaaccatgtaaaataagatggca
cgtattgaatgtaaggctggacttcagtgttgcaattcagaatcaatgtc
actgactttcagctgtgtaatgaaactttatcaatactatccatgtgtga
gcacaaaagaaatcttagataagcctctcagaattaggctagtcaaaatg
aactaagactaaacatcaattgaaaatatataatcagaaaaccacagttt
ctggcccagagaaatggcttagtggtgaagagctctctctgctctttcag
aggacccaggctgggttccaagcatccacatggtggctcacagtcatttg
taacttagttccagggaatctgatgccctgttcttgtctttgaaggcaac
acacacacacacacacacacacacacacacacacacagacacacacacac
acactgtccatatacatacgcacaggcaaacacattcaaacacagcaaat
aaaattagcaaatccttaaaaaatagtgtcttcaaatcactgttggaacc
aagtgctgacattagagcccatttttggattccagcgtatactgaagacc
agctgaaacattcaatatacatatatgtttatatctctatttctctatag
attcaatctggtctgttccctctgagtaatgcagctacacagtaagtctt
gggattgatgacagcttgcctcaacaaaaatgttaaaataggaattagtc
agccgggcaatggtggcgcacgcctttaatcccagcacttgggaggcaga
ggcaggtggatttctgagttcgaggcccagcctggtctacagagttgagt
tccaggacaccagagctaaacagagaaaccctgtctgaaaaaccaaaaat
caaaaaaaaaaaaaaggattatctgcctatcaaatataaaatggagtatc
ataattcctaaaattttcaataaatgaactaaagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_65224242_65225309
seq2: B6Ng01-133I01.b_47_1116 (reverse)

seq1  --TGTGTG-TGTTTAGGAGGGCTGTATG-TACATGGATATGTGAGTGATT  46
        |||||| |||||  || || |||||| ||||| |||||| ||||||||
seq2  TGTGTGTGTTGTTTTAGA-GGATGTATGTTACAT-GATATGGGAGTGATT  48

seq1  GGTGTAAATGCA-TATATGTATATAAGCATATGGATGCCAAAGCAAAAAA  95
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTGTAAATGCATTATATGTATATAAGCATATGGATGCCAAAGCAAAAAA  98

seq1  TAAAGTGTCTTTTTCAATCAATATTCAAACTGTTTTTTGAGACAGGATTT  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGTCTTTTTCAATCAATATTCAAACTGTTTTTTGAGACAGGATTT  148

seq1  CTCACTGGATTTCGAGTTCATCAATTCAGCTAAGCTGCTTAGTCAATGAA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGGATTTCGAGTTCATCAATTCAGCTAAGCTGCTTAGTCAATGAA  198

seq1  CTCCAGGCATCCACCTGCCATTCACCGTAGACTGCCCTGAAAGCTGGGGA  245
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGCATCCA-CTGCCATTCACCGTAGACTGCCCTGAAAGCTGGGGA  247

seq1  TACAGTGTACTTGTTTGGCTTCTGGAAGTTTGAACTCAGATCCTCATGTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGTACTTGTTTGGCTTCTGGAAGTTTGAACTCAGATCCTCATGTT  297

seq1  TGTAGACAGGCATTATTCTGACTGATTAATTCCCCCAGCCCAATACACAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACAGGCATTATTCTGACTGATTAATTCCCCCAGCCCAATACACAG  347

seq1  ATATTTTATTTTAACACCACCTTTGCATTAAAATATTTCTCTCTTTGATT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATTTTAACACCACCTTTGCATTAAAATATTTCTCTCTTTGATT  397

seq1  CTTTTCTTTCATGCTTATTTTCAGACATTTATGGTTTTCTTTAACATGGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTCATGCTTATTTTCAGACATTTATGGTTTTCTTTAACATGGT  447

seq1  GAAATTTTGTTTTTCCATAATGTCTGAAGTAAATGCATTAATTAAAAAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTGTTTTTCCATAATGTCTGAAGTAAATGCATTAATTAAAAAAA  497

seq1  TCCATATACTCATATAAGCACACTTTATACAACCATTTTCCTTTTAGTGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATACTCATATAAGCACACTTTATACAACCATTTTCCTTTTAGTGT  547

seq1  GGTTTTGGCAACATCCTCTTAGGATTTAACTTATATTTTGCTCTTCATCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGGCAACATCCTCTTAGGATTTAACTTATATTTTGCTCTTCATCA  597

seq1  CTGATGTATCACAGTAGCTATAGTCATTTGTTAGGCTGACATAACCAATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTATCACAGTAGCTATAGTCATTTGTTAGGCTGACATAACCAATT  647

seq1  TACCACTTACCAGATGATATAAAAGCCAGGATTCATTATTTCATTAGTTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTTACCAGATGATATAAAAGCCAGGATTCATTATTTCATTAGTTC  697

seq1  TAGAGTCTGAACTTTCACACCACAAGTTATTTTTGAATACTGCCGAGGGA  745
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGAGTCTGAACTTTCACACCACAAGTTATTTCTGAATACTGCCGAGGGA  747

seq1  AATTCAGGCACCTCAAGGCCTGAAATGGCCTCTCTTTATTTGTATTAAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGGCACCTCAAGGCCTGAAATGGCCTCTCTTTATTTGTATTAAAT  797

seq1  TTCTGTGTCTCTATGTCTTTTTCTCTTTTGTATAAAAAACATTAAGACAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTCTCTATGTCTTTTTCTCTTTTGTATAAAAAACATTAAGACAA  847

seq1  ATATTTCCTCATTTTACTTAATTGATTATAATAATTTCAGACTTTGATCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCTCATTTTACTTAATTGATTATAATAATTTCAGACTTTGATCA  897

seq1  GTTGGATCAGAGAATCAGTGTTCAAGATGTGGGGGCACAACTCATCTTAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATCAGAGAATCAGTGTTCAAGATGTGGGGGCACAACTCATCTTAC  947

seq1  AACAAATGCTATTCACAGGTAATTTTAGGAAAGCATTCTTTAAGTTCCAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATGCTATTCACAGGTAATTTTAGGAAAGCATTCTTTAAGTTCCAC  997

seq1  TGGGAAGAAGGTGGACCTCAGAAAATCAAATAACCCCCTTAAAAAATGGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGAAGGTGGACCTCAGAAAATCAAATAACCCCCTTAAAAAATGGG  1047

seq1  GCTCAGAACTGAACAAAGAATTC  1068
      |||||||||||||||||||||||
seq2  GCTCAGAACTGAACAAAGAATTC  1070

seq1: chr16_65085144_65086235
seq2: B6Ng01-133I01.g_68_1153

seq1  GAATTCCAAATGCCTGTTATCAACACCTAGTAGATAACTGGCTATAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATGCCTGTTATCAACACCTAGTAGATAACTGGCTATAAATT  50

seq1  GAATAAATAGATCCAATGGAAAATAGGAAAGTACAATTGCAGAAAGTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATAGATCCAATGGAAAATAGGAAAGTACAATTGCAGAAAGTGAC  100

seq1  CTTAATGTGCATGGTGCATGTATAACTCAACCATGTAAAATAAGATGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGTGCATGGTGCATGTATAACTCAACCATGTAAAATAAGATGGCA  150

seq1  CGTATTGAATGTAAGGCTGGACTTCAGTGTTGCAATTCAGAATCAATGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTGAATGTAAGGCTGGACTTCAGTGTTGCAATTCAGAATCAATGTC  200

seq1  ACTGACTTTCAGCTGTGTAATGAAACTTTATCAATACTATCCATGTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTTTCAGCTGTGTAATGAAACTTTATCAATACTATCCATGTGTGA  250

seq1  GCACAAAAGAAATCTTAGATAAGCCTCTCAGAATTAGGCTAGTCAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAAGAAATCTTAGATAAGCCTCTCAGAATTAGGCTAGTCAAAATG  300

seq1  AACTAAGACTAAACATCAATTGAAAATATATAATCAGAAAACCACAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGACTAAACATCAATTGAAAATATATAATCAGAAAACCACAGTTT  350

seq1  CTGGCCCAGAGAAATGGCTTAGTGGTGAAGAGCTCTCTCTGCTCTTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCAGAGAAATGGCTTAGTGGTGAAGAGCTCTCTCTGCTCTTTCAG  400

seq1  AGGACCCAGGCTGGGTTCCAAGCATCCACATGGTGGCTCACAGTCATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCAGGCTGGGTTCCAAGCATCCACATGGTGGCTCACAGTCATTTG  450

seq1  TAACTTAGTTCCAGGGAATCTGATGCCCTGTTCTTGTCTTTGAAGGCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAGTTCCAGGGAATCTGATGCCCTGTTCTTGTCTTTGAAGGCAAC  500

seq1  ACACACACACACACACACACACACACACACACACACAGACACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACAGACACACACACAC  550

seq1  ACACTGTCCATATACATACGCACAGGCAAACACATTCAAACACAGCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTCCATATACATACGCACAGGCAAACACATTCAAACACAGCAAAT  600

seq1  AAAATTAGCAAATCCTTAAAAAATAGTGTCTTCAAATCACTGTTGGAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGCAAATCCTTAAAAAATAGTGTCTTCAAATCACTGTTGGAACC  650

seq1  AAGTGCTGACATTAGAGCCCATTTTTGGATTCCAGCGTATACTGAAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGACATTAGAGCCCATTTTTGGATTCCAGCGTATACTGAAGACC  700

seq1  AGCTGAAACATTCAATATACATATATGTTTATATCTCTATTTCTCTATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAACATTCAATATACATATATGTTTATATCTCTATTTCTCTATAG  750

seq1  ATTCAATCTGGTCTGTTCCCTCTGAGTAATGCAGCTACACAGTAAGTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATCTGGTCTGTTCCCTCTGAGTAATGCAGCTACACAGTAAGTCTT  800

seq1  GGGATTGATGACAGCTTGCCTCAAACAAAAATGTTAAAATAGGAATTAGT  850
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGGATTGATGACAGCTTGCCTC-AACAAAAATGTTAAAATAGGAATTAGT  849

seq1  CAGCCGGGCAATGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGGGCAATGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAG  899

seq1  AGGCAGGTGGATTTCTGAGTTCGAGG-CCAGCCTGGTCTACAGAG-TGAG  948
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  AGGCAGGTGGATTTCTGAGTTCGAGGCCCAGCCTGGTCTACAGAGTTGAG  949

seq1  TTCCAGGACAACCAGAGCTATACAGAGAAACCCTGTCTTGAAAAACCAAA  998
      ||||||||| |||||||||| |||||||||||||||| ||||||||||||
seq2  TTCCAGGAC-ACCAGAGCTAAACAGAGAAACCCTGTC-TGAAAAACCAAA  997

seq1  AACCAAAAAAAAAAAAAAGGAATTATCTGCCTATACAATATAAAAATGAG  1048
      || ||||||||||||||||| |||||||||||||  |||||||||  |||
seq2  AATCAAAAAAAAAAAAAAGG-ATTATCTGCCTATCAAATATAAAATGGAG  1046

seq1  TATCATAAATACCTAATAAATTTTCATAAAATGAAACTAAAGTA  1092
      |||||| ||| ||||  |||||||||  ||||| ||||||||||
seq2  TATCAT-AATTCCTA--AAATTTTCAATAAATG-AACTAAAGTA  1086